3DLX - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HUMAN 3-OXOACID COA TRANSFERASE 1

Authors :   K. L. Kavanagh, N. Shafqat, W. W. Yue, S. Picaud, J. W. Murray, E. M. Macle Delft, A. K. Roos, C. H. Arrowsmith, M. Wikstrom, A. M. Edwards, C. Boun U. Oppermann, Structural Genomics Consortium (Sgc)

Date :   30 Jun 08 (Deposition) - 12 Aug 08 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Oxct1, Scot, Succinyl-Coa:3-Ketoacid-Coenzyme A Transferase 1, Disease Mutation, Mitochondrion, Transit Peptide, Structural Genomics, Structural Genomics Consortium, Sgc, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. L. Kavanagh, N. Shafqat, W. W. Yue, S. Picaud, J. W. Murray, E. M. Maclean, F. Von Delft, A. K. Roos, C. H. Arrowsmith, M. Wikstrom, A. M. Edwards, C. Bountra, U. Oppermann
Crystal Structure Of Human 3-Oxoacid Coa Transferase 1.
To Be Published
PubMed: search

Molecule 1 - SUCCINYL-COA:3-KETOACID-COENZYME A TRANSFERASE 1
	Chains	:	A, B, C, D
	EC Number	:	2.8.3.5
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PNIC-CTHF
	Expression System Strain	:	BL21(DE3)
	Expression System Vector Type	:	PLASMID
	Gene	:	OXCT1, OXCT, SCOT
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PRO C:158 , GLY C:160 , TYR C:161 , MET C:427 , THR C:461 , GLY C:462 , LYS C:463	BINDING SITE FOR RESIDUE GOL C 1
2	AC2	SOFTWARE	PRO A:158 , GLY A:160 , TYR A:161 , MET A:427 , SER A:431 , THR A:461 , GLY A:462 , LYS A:463	BINDING SITE FOR RESIDUE GOL A 1

(no "SS Bond" information available for 3DLX)

(no "Cis Peptide Bond" information available for 3DLX)

Asymmetric Unit (12, 48)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_000695	T	58	M	SCOT1_HUMAN	Polymorphism	75134564	A/B/C/D	T	58	M
02	UniProt	VAR_000696	V	133	E	SCOT1_HUMAN	Disease (SCOTD)	267606930	A/B/C/D	V	133	E
03	UniProt	VAR_065564	A	215	V	SCOT1_HUMAN	Disease (SCOTD)	201752548	A/B/C/D	A	215	V
04	UniProt	VAR_010337	G	219	E	SCOT1_HUMAN	Disease (SCOTD)	121909302	A/B/C/D	G	219	E
05	UniProt	VAR_010338	V	221	M	SCOT1_HUMAN	Disease (SCOTD)	121909303	A/B/C/D	V	221	M
06	UniProt	VAR_065565	S	226	N	SCOT1_HUMAN	Disease (SCOTD)	368841359	A/B/C/D	S	226	N
07	UniProt	VAR_010339	G	324	E	SCOT1_HUMAN	Disease (SCOTD)	121909301	A/B/C/D	G	324	E
08	UniProt	VAR_065566	L	327	P	SCOT1_HUMAN	Disease (SCOTD)	---	A/B/C/D	L	327	P
09	UniProt	VAR_065567	V	404	F	SCOT1_HUMAN	Disease (SCOTD)	---	A/B/C/D	V	404	F
10	UniProt	VAR_065568	S	405	P	SCOT1_HUMAN	Disease (SCOTD)	---	A/B/C/D	S	405	P
11	UniProt	VAR_000697	C	456	F	SCOT1_HUMAN	Disease (SCOTD)	121909300	A/B/C/D	C	456	F
12	UniProt	VAR_065569	R	468	C	SCOT1_HUMAN	Disease (SCOTD)	---	A/B/C/D	R	468	C

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (12, 24)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_000695	T	58	M	SCOT1_HUMAN	Polymorphism	75134564	A/B	T	58	M
02	UniProt	VAR_000696	V	133	E	SCOT1_HUMAN	Disease (SCOTD)	267606930	A/B	V	133	E
03	UniProt	VAR_065564	A	215	V	SCOT1_HUMAN	Disease (SCOTD)	201752548	A/B	A	215	V
04	UniProt	VAR_010337	G	219	E	SCOT1_HUMAN	Disease (SCOTD)	121909302	A/B	G	219	E
05	UniProt	VAR_010338	V	221	M	SCOT1_HUMAN	Disease (SCOTD)	121909303	A/B	V	221	M
06	UniProt	VAR_065565	S	226	N	SCOT1_HUMAN	Disease (SCOTD)	368841359	A/B	S	226	N
07	UniProt	VAR_010339	G	324	E	SCOT1_HUMAN	Disease (SCOTD)	121909301	A/B	G	324	E
08	UniProt	VAR_065566	L	327	P	SCOT1_HUMAN	Disease (SCOTD)	---	A/B	L	327	P
09	UniProt	VAR_065567	V	404	F	SCOT1_HUMAN	Disease (SCOTD)	---	A/B	V	404	F
10	UniProt	VAR_065568	S	405	P	SCOT1_HUMAN	Disease (SCOTD)	---	A/B	S	405	P
11	UniProt	VAR_000697	C	456	F	SCOT1_HUMAN	Disease (SCOTD)	121909300	A/B	C	456	F
12	UniProt	VAR_065569	R	468	C	SCOT1_HUMAN	Disease (SCOTD)	---	A/B	R	468	C

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (12, 24)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_000695	T	58	M	SCOT1_HUMAN	Polymorphism	75134564	C/D	T	58	M
02	UniProt	VAR_000696	V	133	E	SCOT1_HUMAN	Disease (SCOTD)	267606930	C/D	V	133	E
03	UniProt	VAR_065564	A	215	V	SCOT1_HUMAN	Disease (SCOTD)	201752548	C/D	A	215	V
04	UniProt	VAR_010337	G	219	E	SCOT1_HUMAN	Disease (SCOTD)	121909302	C/D	G	219	E
05	UniProt	VAR_010338	V	221	M	SCOT1_HUMAN	Disease (SCOTD)	121909303	C/D	V	221	M
06	UniProt	VAR_065565	S	226	N	SCOT1_HUMAN	Disease (SCOTD)	368841359	C/D	S	226	N
07	UniProt	VAR_010339	G	324	E	SCOT1_HUMAN	Disease (SCOTD)	121909301	C/D	G	324	E
08	UniProt	VAR_065566	L	327	P	SCOT1_HUMAN	Disease (SCOTD)	---	C/D	L	327	P
09	UniProt	VAR_065567	V	404	F	SCOT1_HUMAN	Disease (SCOTD)	---	C/D	V	404	F
10	UniProt	VAR_065568	S	405	P	SCOT1_HUMAN	Disease (SCOTD)	---	C/D	S	405	P
11	UniProt	VAR_000697	C	456	F	SCOT1_HUMAN	Disease (SCOTD)	121909300	C/D	C	456	F
12	UniProt	VAR_065569	R	468	C	SCOT1_HUMAN	Disease (SCOTD)	---	C/D	R	468	C

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COA_TRANSF_1	PS01273	Coenzyme A transferases signature 1.	SCOT1_HUMAN	55-70	4	A:55-70 B:55-70 C:55-70 D:55-70
2	COA_TRANSF_2	PS01274	Coenzyme A transferases signature 2.	SCOT1_HUMAN	341-349	4	A:341-349 B:341-349 C:341-349 D:341-349

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COA_TRANSF_1	PS01273	Coenzyme A transferases signature 1.	SCOT1_HUMAN	55-70	2	A:55-70 B:55-70 - -
2	COA_TRANSF_2	PS01274	Coenzyme A transferases signature 2.	SCOT1_HUMAN	341-349	2	A:341-349 B:341-349 - -

Biological Unit 2 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COA_TRANSF_1	PS01273	Coenzyme A transferases signature 1.	SCOT1_HUMAN	55-70	2	- - C:55-70 D:55-70
2	COA_TRANSF_2	PS01274	Coenzyme A transferases signature 2.	SCOT1_HUMAN	341-349	2	- - C:341-349 D:341-349

(no "Exon" information available for 3DLX)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:470
 aligned with SCOT1_HUMAN | P55809 from UniProtKB/Swiss-Prot  Length:520

    Alignment length:480
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519
          SCOT1_HUMAN    40 TKFYTDPVEAVKDIPDGATVLVGGFGLCGIPENLIDALLKTGVKGLTAVSNNAGVDNFGLGLLLRSKQIKRMVSSYVGENAEFERQYLSGELEVELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGSPIKYNKDGSVAIASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAETTVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIERLSIRKEGDGEAKSAKPGDDVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNITVHLQSENGVLGLGPYPRQHEADADLINAGKETVTILPGASFFSSDESFAMIRGGHVDLTMLGAMQVSKYGDLANWMIPGKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDKKKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQIA 519
               SCOP domains d3dlxa1 A:40-286 Succinate:CoA transferase, N-terminal domain                                                                                                                                                                                          --------------d3dlxa2 A:301-519 Succinate:CoA transferase, C-terminal domain                                                                                                                                                              SCOP domains
               CATH domains 3dlxA01 A:40-272 Glutaconate Coenzyme A-transferase                                                                                                                                                                                      --------------------------3dlxA02 A:299-513 Glutaconate Coenzyme A-transferase; Chain B                                                                                                                                                          ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.hhhhhhh......eeee........hhhhhhhhhhhh...eeee..........hhhhhhh..eeeeee.....hhhhhhhhhh...eeee.hhhhhhhhhhhhhhh..eeee.....hhhhhh..eeee.....eeee.....eeee..eeeeeee...eeeeeee..eee....ee.hhhhh.hhhhhh..eeeeeeee.eee.....hhhhh..hhhhh.eeee...............----------..hhhhhhhhhhhhhhh....eeee..hhhhhhhhhh......eeee...eeee....hhhhh.............eeeeeee.hhhhhhhhhhh....eeee...eee....ee..ee...ee....hhhhhh.....eeeee....hhhhh..ee..............eee...eeeeee...eeeeeee....hhhhhhh......eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------M--------------------------------------------------------------------------E---------------------------------------------------------------------------------V---E-M----N-------------------------------------------------------------------------------------------------E--P----------------------------------------------------------------------------FP--------------------------------------------------F-----------C--------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------COA_TRANSF_1    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COA_TRANS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3dlx A  40 TKFYTDPVEAVKDIPDGATVLVGGFGLCGIPENLIDALLKTGVKGLTAVSNNAGVDNFGLGLLLRSKQIKRMVSSYVGENAEFERQYLSGELEVELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGSPIKYNKDGSVAIASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAETTVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIERLSIRK----------PGDDVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNITVHLQSENGVLGLGPYPRQHEADADLINAGKETVTILPGASFFSSDESFAMIRGGHVDLTMLGAMQVSKYGDLANWMIPGKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDKKKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQIA 519
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279      |  -       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519
                                                                                                                                                                                                                                                                                286        297

Chain B from PDB  Type:PROTEIN  Length:465
 aligned with SCOT1_HUMAN | P55809 from UniProtKB/Swiss-Prot  Length:520

    Alignment length:479
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509         
          SCOT1_HUMAN    40 TKFYTDPVEAVKDIPDGATVLVGGFGLCGIPENLIDALLKTGVKGLTAVSNNAGVDNFGLGLLLRSKQIKRMVSSYVGENAEFERQYLSGELEVELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGSPIKYNKDGSVAIASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAETTVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIERLSIRKEGDGEAKSAKPGDDVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNITVHLQSENGVLGLGPYPRQHEADADLINAGKETVTILPGASFFSSDESFAMIRGGHVDLTMLGAMQVSKYGDLANWMIPGKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDKKKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQI 518
               SCOP domains d3dlxb1 B:40-285 Succinate:CoA transferase, N-terminal domain                                                                                                                                                                                                      --d3dlxb2 B:301-518 Succinate:CoA transferase, C-terminal domain                                                                                                                                                             SCOP domains
               CATH domains 3dlxB01 B:40-272 Glutaconate Coenzyme A-transferase                                                                                                                                                                                      -------------             3dlxB02 B:299-513 Glutaconate Coenzyme A-transferase; Chain B                                                                                                                                                          ----- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..hhhhhhh......eeee..........hhhhhhhhhh...eeeee........hhhhhhhh..eeeeee.....hhhhhhhhhh...eeee.hhhhhhhhhhhhhhh..eeee.....hhhhhh..eeee.....eeee.....eeee..eeeeeee...eeeeeee..eee....ee.hhhhh.hhhhhh..eeeeeeee.eee.....hhhhh..hhhhh.eeee..............-------------hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhh.....eeeee...eeee....hhhhh.............eeeeeee.hhhhhhhhhhh....eeee...eee....ee.......-.....hhhhhh.....eeeee...eehhhee.ee..............eee...eeeeee...eeeeeee....hhhhhhhh.....eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------M--------------------------------------------------------------------------E---------------------------------------------------------------------------------V---E-M----N-------------------------------------------------------------------------------------------------E--P----------------------------------------------------------------------------FP--------------------------------------------------F-----------C-------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------COA_TRANSF_1    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COA_TRANS------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dlx B  40 TKFYTDPVEAVKDIPDGATVLVGGFGLCGIPENLIDALLKTGVKGLTAVSNNAGVDNFGLGLLLRSKQIKRMVSSYVGENAEFERQYLSGELEVELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGSPIKYNKDGSVAIASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAETTVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIERLSIR-------------DDVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNITVHLQSENGVLGLGPYPRQHEADADLINAGKETVTILPGASFFSSDESFAMIRGGHVDLTMLGAMQVSKYGDLANWMIPGK-VKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDKKKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQI 518
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279     |   -       299       309       319       329       339       349       359       369       379       389       399       409        |-|      429       439       449       459       469       479       489       499       509         
                                                                                                                                                                                                                                                                               285           299                                                                                                                    418 |                                                                                                  
                                                                                                                                                                                                                                                                                                                                                                                                                      420

Chain C from PDB  Type:PROTEIN  Length:467
 aligned with SCOT1_HUMAN | P55809 from UniProtKB/Swiss-Prot  Length:520

    Alignment length:480
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519
          SCOT1_HUMAN    40 TKFYTDPVEAVKDIPDGATVLVGGFGLCGIPENLIDALLKTGVKGLTAVSNNAGVDNFGLGLLLRSKQIKRMVSSYVGENAEFERQYLSGELEVELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGSPIKYNKDGSVAIASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAETTVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIERLSIRKEGDGEAKSAKPGDDVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNITVHLQSENGVLGLGPYPRQHEADADLINAGKETVTILPGASFFSSDESFAMIRGGHVDLTMLGAMQVSKYGDLANWMIPGKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDKKKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQIA 519
               SCOP domains d3dlxc1 C:40-285 Succinate:CoA transferase, N-terminal domain                                                                                                                                                                                         ---------------d3dlxc2 C:301-519 Succinate:CoA transferase, C-terminal domain                                                                                                                                                              SCOP domains
               CATH domains 3dlxC01 C:40-272 Glutaconate Coenzyme A-transferase                                                                                                                                                                                      --------------------------3dlxC02 C:299-513 Glutaconate Coenzyme A-transferase; Chain B                                                                                                                                                          ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.hhhhhhh......eeee........hhhhhhhhhhhh...eeee..........hhhhhhh..eeeeee.....hhhhhhhhhh...eeee.hhhhhhhhhhhhhh...eeee.....hhhhhh..eeee.....eeee.....eeee..eeeeeee...eeeeeee..eee....ee.hhhhh.hhhhhh..eeeeeeee.eee.....hhhhh..hhhhh.eeee..............-------------hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhh.....eeeee...eeee....hhhhh.............eeeeeee.hhhhhhhhhhh....eeee...eee....ee.............hhhhhh.....eeeee....hhhhh..ee..............eee...eeeeee...eeeeeee....hhhhhhh......eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------M--------------------------------------------------------------------------E---------------------------------------------------------------------------------V---E-M----N-------------------------------------------------------------------------------------------------E--P----------------------------------------------------------------------------FP--------------------------------------------------F-----------C--------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------COA_TRANSF_1    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COA_TRANS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3dlx C  40 TKFYTDPVEAVKDIPDGATVLVGGFGLCGIPENLIDALLKTGVKGLTAVSNNAGVDNFGLGLLLRSKQIKRMVSSYVGENAEFERQYLSGELEVELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGSPIKYNKDGSVAIASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAETTVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIERLSIR-------------DDVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNITVHLQSENGVLGLGPYPRQHEADADLINAGKETVTILPGASFFSSDESFAMIRGGHVDLTMLGAMQVSKYGDLANWMIPGKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDKKKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQIA 519
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279     |   -       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519
                                                                                                                                                                                                                                                                               285           299

Chain D from PDB  Type:PROTEIN  Length:459
 aligned with SCOT1_HUMAN | P55809 from UniProtKB/Swiss-Prot  Length:520

    Alignment length:480
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519
          SCOT1_HUMAN    40 TKFYTDPVEAVKDIPDGATVLVGGFGLCGIPENLIDALLKTGVKGLTAVSNNAGVDNFGLGLLLRSKQIKRMVSSYVGENAEFERQYLSGELEVELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGSPIKYNKDGSVAIASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAETTVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIERLSIRKEGDGEAKSAKPGDDVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNITVHLQSENGVLGLGPYPRQHEADADLINAGKETVTILPGASFFSSDESFAMIRGGHVDLTMLGAMQVSKYGDLANWMIPGKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDKKKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQIA 519
               SCOP domains d3dlxd1 D:40-286 Succinate:CoA transferase, N-terminal domain                                                                                                                                                                                                         d3dlxd2 D:302-519 Succinate:CoA transferase, C-terminal domain                                                                                                                                                             SCOP domains
               CATH domains 3dlxD01 D:40-272 Glutaconate Coenzyme A-transferase                                                                                                                                                                                      --------------               3dlxD02 D:302-513 Glutaconate Coenzyme A-transferase; Chain B                                                                                                                                                       ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.hhhhhhh......eeee........hhhhhhhhhhhh...eeee..........hhhhhhh..eeeeee.....hhhhhhhhhh...eeee.hhhhhhhhhhhhhhh..eeee.....hhhhhh..eeee..-..eeee.....eeee..eeeeeee...eeeeeee..eee....ee.hhhhh.hhhhhhhheeeeeeee.eee.....hhhhh..hhhhh.eeee...............---------------hhhhhhhhhhhh....eeee..hhhhhhhhhh......eeee...eeeee....................eeeeeeee.hhhhhhhhhhh....eeee...eee....ee.............hhhhhh.....eeeee....hhhhh..ee..............eee...eeeeee...eeeeeee.-----..hhhhh................. Sec.struct. author
                 SAPs(SNPs) ------------------M--------------------------------------------------------------------------E---------------------------------------------------------------------------------V---E-M----N-------------------------------------------------------------------------------------------------E--P----------------------------------------------------------------------------FP--------------------------------------------------F-----------C--------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------COA_TRANSF_1    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COA_TRANS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3dlx D  40 TKFYTDPVEAVKDIPDGATVLVGGFGLCGIPENLIDALLKTGVKGLTAVSNNAGVDNFGLGLLLRSKQIKRMVSSYVGENAEFERQYLSGELEVELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGSPIKYNK-GSVAIASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAETTVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIERLSIRK---------------RERIIKRAALEFEDGMYANLGIGIPLLASNFISPNITVHLQSENGVLGLGPYPRQHEADADLINAGKETVTILPGASFFSSDESFAMIRGGHVDLTMLGAMQVSKYGDLANWMIPGKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDKKKGLTLIELW-----DDVQKSTGCDFAVSPKLMPMQQIA 519
                                    49        59        69        79        89        99       109       119       129       139       149       159       169      |179       189       199       209       219       229       239       249       259       269       279      |  -         -  |    309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489|     |499       509       519
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: NagB/RpiA/CoA transferase-like (94)

Superfamily: NagB/RpiA/CoA transferase-like (94)

Family: CoA transferase alpha subunit-like (17)

Protein domain: Succinate:CoA transferase, N-terminal domain (9)

Human (Homo sapiens) [TaxId: 9606] (1)

1a	d3dlxa1	A:40-286
1b	d3dlxb1	B:40-285
1c	d3dlxc1	C:40-285
1d	d3dlxd1	D:40-286

Family: CoA transferase beta subunit-like (14)

Protein domain: Succinate:CoA transferase, C-terminal domain (9)

Human (Homo sapiens) [TaxId: 9606] (1)

2a	d3dlxa2	A:301-519
2b	d3dlxb2	B:301-518
2c	d3dlxc2	C:301-519
2d	d3dlxd2	D:302-519

Asymmetric Unit

Classes(

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Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

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Organisms( (-)

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Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Glutaconate Coenzyme A-transferase (14)

Homologous Superfamily: Glutaconate Coenzyme A-transferase (14)

Homo sapiens. Organism_taxid: 9606. (1)

1a	3dlxD01	D:40-272
1b	3dlxA01	A:40-272
1c	3dlxB01	B:40-272
1d	3dlxC01	C:40-272

Topology: Glutaconate Coenzyme A-transferase; Chain B (12)

Homologous Superfamily: Glutaconate Coenzyme A-transferase; Chain B (12)

Homo sapiens. Organism_taxid: 9606. (1)

2a	3dlxA02	A:299-513
2b	3dlxC02	C:299-513
2c	3dlxB02	B:299-513
2d	3dlxD02	D:302-513

(no "Pfam Domain" information available for 3DLX)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (SCOT1_HUMAN | P55809)

molecular function
	GO:0008260	3-oxoacid CoA-transferase activity	Catalysis of the reaction: succinyl-CoA + a 3-oxo acid = succinate + a 3-oxo-acyl-CoA.
	GO:0008410	CoA-transferase activity	Catalysis of the transfer of a coenzyme A (CoA) group from one compound (donor) to another (acceptor).
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0060612	adipose tissue development	The process whose specific outcome is the progression of adipose tissue over time, from its formation to the mature structure. Adipose tissue is specialized tissue that is used to store fat.
	GO:0007420	brain development	The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
	GO:0046950	cellular ketone body metabolic process	The chemical reactions and pathways involving ketone bodies, any one of the three substances: acetoacetate, D-3-hydroxybutyrate (beta-hydroxybutyrate) or acetone, as carried out by individual cells. Although 3-hydroxybutyrate is not a ketone, it is classed as a ketone body because it exists in an equilibrium with acetoacetate. Ketone bodies may accumulate in excessive amounts in the body in starvation, diabetes mellitus or in other defects of carbohydrate metabolism.
	GO:0007507	heart development	The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood.
	GO:0046952	ketone body catabolic process	The chemical reactions and pathways resulting in the breakdown of ketone bodies, any one of the three substances: acetoacetate, D-3-hydroxybutyrate (beta-hydroxybutyrate) or acetone. Ketone bodies can be used as an energy source as an alternative to glucose. Utilization of ketone bodies in peripheral tissues involves conversion of acetoacetate to acetoacetyl-CoA, which is then converted to two molecules of acetyl-CoA.
	GO:0042182	ketone catabolic process	The chemical reactions and pathways resulting in the breakdown of ketones, a class of organic compounds that contain the carbonyl group, CO, and in which the carbonyl group is bonded only to carbon atoms. The general formula for a ketone is RCOR, where R and R are alkyl or aryl groups.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0035774	positive regulation of insulin secretion involved in cellular response to glucose stimulus	Any process that increases the frequency, rate or extent of the regulated release of insulin that contributes to the response of a cell to glucose.
	GO:0014823	response to activity	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an activity stimulus.
	GO:0042493	response to drug	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
	GO:0045471	response to ethanol	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus.
	GO:0009725	response to hormone	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.
	GO:0007584	response to nutrient	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus.
	GO:0042594	response to starvation	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment.
cellular component
	GO:0005759	mitochondrial matrix	The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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