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3DLX
Asym. Unit
Info
Asym.Unit (291 KB)
Biol.Unit 1 (145 KB)
Biol.Unit 2 (144 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN 3-OXOACID COA TRANSFERASE 1
Authors
:
K. L. Kavanagh, N. Shafqat, W. W. Yue, S. Picaud, J. W. Murray, E. M. Macle Delft, A. K. Roos, C. H. Arrowsmith, M. Wikstrom, A. M. Edwards, C. Boun U. Oppermann, Structural Genomics Consortium (Sgc)
Date
:
30 Jun 08 (Deposition) - 12 Aug 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Oxct1, Scot, Succinyl-Coa:3-Ketoacid-Coenzyme A Transferase 1, Disease Mutation, Mitochondrion, Transit Peptide, Structural Genomics, Structural Genomics Consortium, Sgc, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. L. Kavanagh, N. Shafqat, W. W. Yue, S. Picaud, J. W. Murray, E. M. Maclean, F. Von Delft, A. K. Roos, C. H. Arrowsmith, M. Wikstrom, A. M. Edwards, C. Bountra, U. Oppermann
Crystal Structure Of Human 3-Oxoacid Coa Transferase 1.
To Be Published
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO C:158 , GLY C:160 , TYR C:161 , MET C:427 , THR C:461 , GLY C:462 , LYS C:463
BINDING SITE FOR RESIDUE GOL C 1
2
AC2
SOFTWARE
PRO A:158 , GLY A:160 , TYR A:161 , MET A:427 , SER A:431 , THR A:461 , GLY A:462 , LYS A:463
BINDING SITE FOR RESIDUE GOL A 1
[
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]
SAPs(SNPs)/Variants
(12, 48)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_000695 (T58M, chain A/B/C/D, )
02: VAR_000696 (V133E, chain A/B/C/D, )
03: VAR_065564 (A215V, chain A/B/C/D, )
04: VAR_010337 (G219E, chain A/B/C/D, )
05: VAR_010338 (V221M, chain A/B/C/D, )
06: VAR_065565 (S226N, chain A/B/C/D, )
07: VAR_010339 (G324E, chain A/B/C/D, )
08: VAR_065566 (L327P, chain A/B/C/D, )
09: VAR_065567 (V404F, chain A/B/C/D, )
10: VAR_065568 (S405P, chain A/B/C/D, )
11: VAR_000697 (C456F, chain A/B/C/D, )
12: VAR_065569 (R468C, chain A/B/C/D, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_000695
T
58
M
SCOT1_HUMAN
Polymorphism
75134564
A/B/C/D
T
58
M
02
UniProt
VAR_000696
V
133
E
SCOT1_HUMAN
Disease (SCOTD)
---
A/B/C/D
V
133
E
03
UniProt
VAR_065564
A
215
V
SCOT1_HUMAN
Disease (SCOTD)
201752548
A/B/C/D
A
215
V
04
UniProt
VAR_010337
G
219
E
SCOT1_HUMAN
Disease (SCOTD)
---
A/B/C/D
G
219
E
05
UniProt
VAR_010338
V
221
M
SCOT1_HUMAN
Disease (SCOTD)
---
A/B/C/D
V
221
M
06
UniProt
VAR_065565
S
226
N
SCOT1_HUMAN
Disease (SCOTD)
---
A/B/C/D
S
226
N
07
UniProt
VAR_010339
G
324
E
SCOT1_HUMAN
Disease (SCOTD)
---
A/B/C/D
G
324
E
08
UniProt
VAR_065566
L
327
P
SCOT1_HUMAN
Disease (SCOTD)
---
A/B/C/D
L
327
P
09
UniProt
VAR_065567
V
404
F
SCOT1_HUMAN
Disease (SCOTD)
---
A/B/C/D
V
404
F
10
UniProt
VAR_065568
S
405
P
SCOT1_HUMAN
Disease (SCOTD)
---
A/B/C/D
S
405
P
11
UniProt
VAR_000697
C
456
F
SCOT1_HUMAN
Disease (SCOTD)
---
A/B/C/D
C
456
F
12
UniProt
VAR_065569
R
468
C
SCOT1_HUMAN
Disease (SCOTD)
---
A/B/C/D
R
468
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: COA_TRANSF_1 (A:55-70,B:55-70,C:55-70,D:55-70)
2: COA_TRANSF_2 (A:341-349,B:341-349,C:341-349,D:34...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COA_TRANSF_1
PS01273
Coenzyme A transferases signature 1.
SCOT1_HUMAN
55-70
4
A:55-70
B:55-70
C:55-70
D:55-70
2
COA_TRANSF_2
PS01274
Coenzyme A transferases signature 2.
SCOT1_HUMAN
341-349
4
A:341-349
B:341-349
C:341-349
D:341-349
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3dlxa1 (A:40-286)
1b: SCOP_d3dlxb1 (B:40-285)
1c: SCOP_d3dlxc1 (C:40-285)
1d: SCOP_d3dlxd1 (D:40-286)
2a: SCOP_d3dlxa2 (A:301-519)
2b: SCOP_d3dlxb2 (B:301-518)
2c: SCOP_d3dlxc2 (C:301-519)
2d: SCOP_d3dlxd2 (D:302-519)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NagB/RpiA/CoA transferase-like
(94)
Superfamily
:
NagB/RpiA/CoA transferase-like
(94)
Family
:
CoA transferase alpha subunit-like
(17)
Protein domain
:
Succinate:CoA transferase, N-terminal domain
(9)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d3dlxa1
A:40-286
1b
d3dlxb1
B:40-285
1c
d3dlxc1
C:40-285
1d
d3dlxd1
D:40-286
Family
:
CoA transferase beta subunit-like
(14)
Protein domain
:
Succinate:CoA transferase, C-terminal domain
(9)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d3dlxa2
A:301-519
2b
d3dlxb2
B:301-518
2c
d3dlxc2
C:301-519
2d
d3dlxd2
D:302-519
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_3dlxD01 (D:40-272)
1b: CATH_3dlxA01 (A:40-272)
1c: CATH_3dlxB01 (B:40-272)
1d: CATH_3dlxC01 (C:40-272)
2a: CATH_3dlxA02 (A:299-513)
2b: CATH_3dlxC02 (C:299-513)
2c: CATH_3dlxB02 (B:299-513)
2d: CATH_3dlxD02 (D:302-513)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaconate Coenzyme A-transferase
(14)
Homologous Superfamily
:
Glutaconate Coenzyme A-transferase
(14)
Homo sapiens. Organism_taxid: 9606.
(1)
1a
3dlxD01
D:40-272
1b
3dlxA01
A:40-272
1c
3dlxB01
B:40-272
1d
3dlxC01
C:40-272
Topology
:
Glutaconate Coenzyme A-transferase; Chain B
(12)
Homologous Superfamily
:
Glutaconate Coenzyme A-transferase; Chain B
(12)
Homo sapiens. Organism_taxid: 9606.
(1)
2a
3dlxA02
A:299-513
2b
3dlxC02
C:299-513
2c
3dlxB02
B:299-513
2d
3dlxD02
D:302-513
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Pfam Domains
(0, 0)
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all PFAM domains
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