3DGL - JenaLib

Title :   1.8 A CRYSTAL STRUCTURE OF A NON-BIOLOGICAL PROTEIN WITH BOUND ATP IN A NOVEL BENT CONFORMATION

Authors :   C. R. Simmons, J. P. Allen, J. C. Chaput

Date :   13 Jun 08 (Deposition) - 30 Jun 09 (Release) - 08 Dec 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A

Keywords :   Alpha/Beta Fold, Bent Atp, Non-Biological Protein, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. R. Simmons, J. M. Stomel, M. D. Mcconnell, D. A. Smith, J. L. Watkins, J. P. Allen, J. C. Chaput
A Synthetic Protein Selected For Ligand Binding Affinity Mediates Atp Hydrolysis.
Acs Chem. Biol. V. 4 649 2009
PubMed-ID: 19522480 | Reference-DOI: 10.1021/CB900109W
(for further references see the PDB file header)

Compounds

Molecule 1 - ATP BINDING PROTEIN-DX
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PIADL14
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	UNIDENTIFIED
	Organism Taxid	:	32644

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 5)

Asymmetric/Biological Unit (3, 5)

No.	Name	Count	Type	Full Name
1	ATP	1	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
2	PEG	3	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	ZN	1	Ligand/Ion	ZINC ION

Sites (5, 5)

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:23 , CYS A:26 , CYS A:46 , CYS A:49	BINDING SITE FOR RESIDUE ZN A 80
2	AC2	SOFTWARE	ASP A:32 , TYR A:43 , ASN A:44 , MET A:45 , PHE A:50 , TYR A:61 , HIS A:62 , GLY A:63 , HOH A:98 , HOH A:99 , HOH A:138 , HOH A:148 , HOH A:157 , HOH A:167	BINDING SITE FOR RESIDUE ATP A 81
3	AC3	SOFTWARE	CYS A:26 , TRP A:33 , VAL A:35 , PEG A:84 , HOH A:189 , HOH A:194 , HOH A:219	BINDING SITE FOR RESIDUE PEG A 82
4	AC4	SOFTWARE	LYS A:9 , ASN A:12 , TRP A:13 , ARG A:16 , ARG A:21 , HOH A:193	BINDING SITE FOR RESIDUE PEG A 83
5	AC5	SOFTWARE	LEU A:14 , TYR A:18 , PEG A:82 , HOH A:174 , HOH A:209	BINDING SITE FOR RESIDUE PEG A 84

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

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Chain A from PDB  Type:PROTEIN  Length:69
                                                                                                    
               SCOP domains --------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh...........eeee..eeeee..hhhhhhhhhhhh......eeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  3dgl A  5 DDDDKKTNWLKRIYRVRPCVKCKVAPRDWKVKNKHLRIYNMCKTCFNNSIDIGDDTYHGHVDWLMYADS 73
                                    14        24        34        44        54        64

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

2p05	STRUCTURAL INSIGHTS INTO THE EVOLUTION OF A NON-BIOLOGICAL PROTEIN
2p09	SAME PROTEIN WITH TWO MUTATIONS N32D AND D65V
3dgm	STRUCTURE OF A NON-BIOLOGICAL ATP BINDING PROTEIN WITH ADP BOUND
3dgn	SAME PROTEIN CRYSTALLIZED IN THE PRESENCE OF 100 MM ADP
3dgo	SAME PROTEIN WITH A TYR-PHE MUTATION IN THE LIGAND BINDING DOMAIN

Description