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(-) Description

Title :  STRUCTURAL INSIGHTS INTO THE EVOLUTION OF A NON-BIOLOGICAL PROTEIN
 
Authors :  M. Smith, M. Rosenow, M. Wang, J. P. Allen, J. W. Szostak, J. C. Chaput
Date :  28 Feb 07  (Deposition) - 05 Jun 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Alpha/Beta Fold, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. D. Smith, M. A. Rosenow, M. Wang, J. P. Allen, J. W. Szostak, J. C. Chaput
Structural Insights Into The Evolution Of A Non-Biological Protein: Importance Of Surface Residues In Protein Fold Optimization.
Plos One V. 2 E467 2007
PubMed-ID: 17520026  |  Reference-DOI: 10.1371/JOURNAL.PONE.0000467

(-) Compounds

Molecule 1 - A NON-BIOLOGICAL ATP BINDING PROTEIN 1819
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Scientific: UNIDENTIFIED
    Organism Taxid: 32644

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric Unit (4, 4)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
3CL1Ligand/IonCHLORIDE ION
4ZN1Ligand/IonZINC ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
11PE2Ligand/IonPENTAETHYLENE GLYCOL
2ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
3CL-1Ligand/IonCHLORIDE ION
4ZN-1Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:23 , CYS A:26 , CYS A:46 , CYS A:49BINDING SITE FOR RESIDUE ZN A 200
2AC2SOFTWARELYS A:10 , TRP A:67 , LEU A:68BINDING SITE FOR RESIDUE CL A 300
3AC3SOFTWARELYS A:36 , ARG A:41 , TYR A:43 , ASN A:44 , MET A:45 , PHE A:50 , HIS A:62 , GLY A:63 , HIS A:64BINDING SITE FOR RESIDUE ADP A 100
4AC4SOFTWARETYR A:18 , CYS A:26 , TRP A:33BINDING SITE FOR RESIDUE 1PE A 400

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2P05)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2P05)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2P05)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:63
                                                                                              
               SCOP domains --------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh...........eeee..eeeee..hhhhhhhhhhhh......eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                  2p05 A  9 KKTNWLKRIYRVRPCVKCKVAPRNWKVKNKHLRIYNMCKTCFNNSIDIGDDTYHGHDDWLMYA 71
                                    18        28        38        48        58        68
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2P05)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2P05)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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  2p05
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 Related Entries

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(-) Related Entries Specified in the PDB File

2p09