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Biol. Unit 1 - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF TM1086

Authors :   M. Chruszcz, E. Evdokimova, M. Kudritska, A. Savchenko, A. Edwards, A. Joachimiak, W. Minor, Midwest Center For Structural Genomics

Date :   03 Jun 08 (Deposition) - 05 Aug 08 (Release) - 05 Oct 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.25

Chains :   Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E  (2x)

Keywords :   Tm1086, Sad, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Chruszcz, E. Evdokimova, M. Kudritska, A. Savchenko, A. Edwards, W. Minor
Crystal Structure Of Tm1086
To Be Published
PubMed: search

Molecule 1 - TM1086
	Chains	:	A, B, C, D, E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21-CODONPLUS(DE3)-RP
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	TM_1086
	Organism Scientific	:	THERMOTOGA MARITIMA
	Organism Taxid	:	2336

		1	2	3	4	5
Asymmetric Unit	:	A	B	C	D	E
Biological Unit 1 (2x)	:	A	B	C	D	E

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 86)

No.	Name	Count	Type	Full Name
1	CL	12	Ligand/Ion	CHLORIDE ION
2	K	5	Ligand/Ion	POTASSIUM ION
3	MSE	55	Mod. Amino Acid	SELENOMETHIONINE
4	SO4	14	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 138)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	K	-1	Ligand/Ion	POTASSIUM ION
3	MSE	110	Mod. Amino Acid	SELENOMETHIONINE
4	SO4	28	Ligand/Ion	SULFATE ION

Asymmetric Unit (26, 26)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:92 , GLY A:93 , LYS A:96	BINDING SITE FOR RESIDUE SO4 A 284
02	AC2	SOFTWARE	SER B:92 , GLY B:93 , LYS B:96	BINDING SITE FOR RESIDUE SO4 B 284
03	AC3	SOFTWARE	ARG B:10 , LYS B:133 , HOH B:370 , TYR C:45	BINDING SITE FOR RESIDUE SO4 B 285
04	AC4	SOFTWARE	SER C:92 , GLY C:93	BINDING SITE FOR RESIDUE SO4 C 284
05	AC5	SOFTWARE	SER D:92 , GLY D:93 , LYS D:96 , HOH D:410	BINDING SITE FOR RESIDUE SO4 D 284
06	AC6	SOFTWARE	LYS D:176 , GLU D:269 , GLU D:270	BINDING SITE FOR RESIDUE SO4 D 285
07	AC7	SOFTWARE	SER E:92 , GLY E:93 , LYS E:96 , HOH E:420	BINDING SITE FOR RESIDUE SO4 E 284
08	AC8	SOFTWARE	LYS A:176 , GLU A:269 , GLU A:270	BINDING SITE FOR RESIDUE SO4 A 285
09	AC9	SOFTWARE	ARG B:2 , HOH B:410 , ARG D:273 , HOH D:365	BINDING SITE FOR RESIDUE SO4 B 286
10	BC1	SOFTWARE	LYS C:48 , HIS C:115 , HOH C:299 , HOH C:355	BINDING SITE FOR RESIDUE CL C 285
11	BC2	SOFTWARE	LYS E:48 , HIS E:115 , HOH E:310 , HOH E:369	BINDING SITE FOR RESIDUE CL E 285
12	BC3	SOFTWARE	HIS D:180 , HOH D:304	BINDING SITE FOR RESIDUE CL D 286
13	BC4	SOFTWARE	LYS D:48 , HIS D:115 , HOH D:330 , HOH D:357	BINDING SITE FOR RESIDUE CL D 287
14	BC5	SOFTWARE	HIS C:144 , PRO C:145 , ASP C:146	BINDING SITE FOR RESIDUE CL C 286
15	BC6	SOFTWARE	HIS B:180 , HOH B:393 , HIS E:180	BINDING SITE FOR RESIDUE CL B 287
16	BC7	SOFTWARE	HIS A:180 , HOH A:341	BINDING SITE FOR RESIDUE CL A 286
17	BC8	SOFTWARE	LYS B:48 , HIS B:115 , HOH B:323 , HOH B:389	BINDING SITE FOR RESIDUE CL B 288
18	BC9	SOFTWARE	HIS C:180 , HOH C:301	BINDING SITE FOR RESIDUE CL C 287
19	CC1	SOFTWARE	LYS A:48 , HIS A:115 , HOH A:378 , HOH A:406	BINDING SITE FOR RESIDUE CL A 287
20	CC2	SOFTWARE	ASN E:4 , HOH E:363 , HOH E:382	BINDING SITE FOR RESIDUE CL E 286
21	CC3	SOFTWARE	HIS A:144 , ASP A:146 , LYS A:265	BINDING SITE FOR RESIDUE CL A 288
22	CC4	SOFTWARE	GLY E:41 , GLY E:42 , THR E:44 , GLU E:62 , GLY E:64 , SER E:66	BINDING SITE FOR RESIDUE K E 287
23	CC5	SOFTWARE	GLY A:41 , GLY A:42 , THR A:44 , GLU A:62 , GLY A:64 , SER A:66	BINDING SITE FOR RESIDUE K A 289
24	CC6	SOFTWARE	GLY C:41 , GLY C:42 , THR C:44 , GLU C:62 , GLY C:64 , SER C:66	BINDING SITE FOR RESIDUE K C 288
25	CC7	SOFTWARE	GLY D:41 , GLY D:42 , THR D:44 , GLU D:62 , GLY D:64 , SER D:66	BINDING SITE FOR RESIDUE K D 288
26	CC8	SOFTWARE	GLY B:41 , GLY B:42 , THR B:44 , GLU B:62 , GLY B:64 , SER B:66	BINDING SITE FOR RESIDUE K B 289

(no "SS Bond" information available for 3DCL)

(no "Cis Peptide Bond" information available for 3DCL)

(no "SAP(SNP)/Variant" information available for 3DCL)

(no "PROSITE Motif" information available for 3DCL)

(no "Exon" information available for 3DCL)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:283
 aligned with Q9X0H2_THEMA | Q9X0H2 from UniProtKB/TrEMBL  Length:282

    Alignment length:283
                              1                                                                                                                                                                                                                                                                                        
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278   
         Q9X0H2_THEMA     - --MRTNKDRLVRISVVGEIAPAKMRSPYSVTTEGTVRVIPVLGGITYNVKVGDSAYGWAGDHVEPGVSVMARRKEEEIPLMTLSCIGNEVIVMSGDAKGSRGFVTGKHGGVNHVLVHFEEEVLGKLMVGDKILIKAWGQGLKLLDHPDVKVMNIDPDLFEKLGIQEKNGKIHVPVVAKIPAHMMGSGIGASSSASTDYDIMASNPEDLGVADLKLGDIVAIQDHDNSYGVGKYRKGAVSIGVVVHSACVSAGHGPGVVVIMTGDESKILPEEVERANISDYLV 281
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3dclA01    3dclA02       3dclA03 A:24-62 tm1086 domain          3dclA02 A:10-23,A:63-139  [code=2.40.10.170, no name defined]                3dclA01 A:-1-9,A:140-281 tm1086 (SG structure) domain                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh..eeeeeee.........ee.....ee.......ee...................eeeee..hhhhhhhhhhhh....eeee........eeeeeeee....eeeee.hhhhhh......eeeeee.............ee...hhhhhh....eee..eeeeee.eeehhhhh.............ee....hhhhhh........eeeeeeee......eeeeeeeeeeee............eeeeeeeee...eeeee....hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dcl A  -1 GHmRTNKDRLVRISVVGEIAPAKmRSPYSVTTEGTVRVIPVLGGITYNVKVGDSAYGWAGDHVEPGVSVmARRKEEEIPLmTLSCIGNEVIVmSGDAKGSRGFVTGKHGGVNHVLVHFEEEVLGKLmVGDKILIKAWGQGLKLLDHPDVKVmNIDPDLFEKLGIQEKNGKIHVPVVAKIPAHmmGSGIGASSSASTDYDImASNPEDLGVADLKLGDIVAIQDHDNSYGVGKYRKGAVSIGVVVHSACVSAGHGPGVVVImTGDESKILPEEVERANISDYLV 281
                              |      8        18   |    28        38        48        58        68        78|       88  |     98       108       118      |128       138       148 |     158       168       178  ||   188       198|      208       218       228       238       248       258|      268       278   
                              |                   22-MSE                                        68-MSE     79-MSE      91-MSE                           125-MSE                  150-MSE                        181-MSE           199-MSE                                                     259-MSE                  
                              1-MSE                                                                                                                                                                              182-MSE

Chain B from PDB  Type:PROTEIN  Length:281
 aligned with Q9X0H2_THEMA | Q9X0H2 from UniProtKB/TrEMBL  Length:282

    Alignment length:281
                             1                                                                                                                                                                                                                                                                                       
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279 
         Q9X0H2_THEMA     - -MRTNKDRLVRISVVGEIAPAKMRSPYSVTTEGTVRVIPVLGGITYNVKVGDSAYGWAGDHVEPGVSVMARRKEEEIPLMTLSCIGNEVIVMSGDAKGSRGFVTGKHGGVNHVLVHFEEEVLGKLMVGDKILIKAWGQGLKLLDHPDVKVMNIDPDLFEKLGIQEKNGKIHVPVVAKIPAHMMGSGIGASSSASTDYDIMASNPEDLGVADLKLGDIVAIQDHDNSYGVGKYRKGAVSIGVVVHSACVSAGHGPGVVVIMTGDESKILPEEVERANISDYL 280
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3dclB01   3dclB02       3dclB03 B:24-62 tm1086 domain          3dclB02 B:10-23,B:63-139  [code=2.40.10.170, no name defined]                3dclB01 B:0-9,B:140-280 tm1086 (SG structure) domain                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh..eeeeeee..ee.....ee.....ee....ee.ee...................eeeee..hhhhhhhhhhhh....eeee........eeeeeeee....eeeee.hhhhhh......eeeeee.............ee...hhhhhh....eee..eeeeee.eeehhhhh.............ee....hhhhhh........eeeeeeee......eeeeeeeeeeee............eeeeeeeee...eeeee....hhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dcl B   0 HmRTNKDRLVRISVVGEIAPAKmRSPYSVTTEGTVRVIPVLGGITYNVKVGDSAYGWAGDHVEPGVSVmARRKEEEIPLmTLSCIGNEVIVmSGDAKGSRGFVTGKHGGVNHVLVHFEEEVLGKLmVGDKILIKAWGQGLKLLDHPDVKVmNIDPDLFEKLGIQEKNGKIHVPVVAKIPAHmmGSGIGASSSASTDYDImASNPEDLGVADLKLGDIVAIQDHDNSYGVGKYRKGAVSIGVVVHSACVSAGHGPGVVVImTGDESKILPEEVERANISDYL 280
                             |       9        19  |     29        39        49        59        69        79        89 |      99       109       119     | 129       139       149|      159       169       179 ||    189       199       209       219       229       239       249       259       269       279 
                             1-MSE               22-MSE                                        68-MSE     79-MSE      91-MSE                           125-MSE                  150-MSE                        181-MSE           199-MSE                                                     259-MSE                 
                                                                                                                                                                                                                182-MSE

Chain C from PDB  Type:PROTEIN  Length:280
 aligned with Q9X0H2_THEMA | Q9X0H2 from UniProtKB/TrEMBL  Length:282

    Alignment length:280
                             1                                                                                                                                                                                                                                                                                      
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279
         Q9X0H2_THEMA     - -MRTNKDRLVRISVVGEIAPAKMRSPYSVTTEGTVRVIPVLGGITYNVKVGDSAYGWAGDHVEPGVSVMARRKEEEIPLMTLSCIGNEVIVMSGDAKGSRGFVTGKHGGVNHVLVHFEEEVLGKLMVGDKILIKAWGQGLKLLDHPDVKVMNIDPDLFEKLGIQEKNGKIHVPVVAKIPAHMMGSGIGASSSASTDYDIMASNPEDLGVADLKLGDIVAIQDHDNSYGVGKYRKGAVSIGVVVHSACVSAGHGPGVVVIMTGDESKILPEEVERANISDY 279
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3dclC01   3dclC02       3dclC03 C:24-62 tm1086 domain          3dclC02 C:10-23,C:63-139  [code=2.40.10.170, no name defined]                3dclC01 C:0-9,C:140-279 tm1086 (SG structure) domain                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh..eeeeeee........eee.....eee......ee...................eeeee..hhhhhhhhhhhh....eeee........eeeeeeee....eeeee.hhhhhh......eeeeee.............ee...hhhhhh....eee..eeeeee.eeehhhhh.............ee....hhhhhh........eeeeeeee......eeeeeeeeeeee............eeeeeeeee...eeeee....hhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dcl C   0 HmRTNKDRLVRISVVGEIAPAKmRSPYSVTTEGTVRVIPVLGGITYNVKVGDSAYGWAGDHVEPGVSVmARRKEEEIPLmTLSCIGNEVIVmSGDAKGSRGFVTGKHGGVNHVLVHFEEEVLGKLmVGDKILIKAWGQGLKLLDHPDVKVmNIDPDLFEKLGIQEKNGKIHVPVVAKIPAHmmGSGIGASSSASTDYDImASNPEDLGVADLKLGDIVAIQDHDNSYGVGKYRKGAVSIGVVVHSACVSAGHGPGVVVImTGDESKILPEEVERANISDY 279
                             |       9        19  |     29        39        49        59        69        79        89 |      99       109       119     | 129       139       149|      159       169       179 ||    189       199       209       219       229       239       249       259       269       279
                             1-MSE               22-MSE                                        68-MSE     79-MSE      91-MSE                           125-MSE                  150-MSE                        181-MSE           199-MSE                                                     259-MSE                
                                                                                                                                                                                                                182-MSE

Chain D from PDB  Type:PROTEIN  Length:282
 aligned with Q9X0H2_THEMA | Q9X0H2 from UniProtKB/TrEMBL  Length:282

    Alignment length:282
                              1                                                                                                                                                                                                                                                                                       
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278  
         Q9X0H2_THEMA     - --MRTNKDRLVRISVVGEIAPAKMRSPYSVTTEGTVRVIPVLGGITYNVKVGDSAYGWAGDHVEPGVSVMARRKEEEIPLMTLSCIGNEVIVMSGDAKGSRGFVTGKHGGVNHVLVHFEEEVLGKLMVGDKILIKAWGQGLKLLDHPDVKVMNIDPDLFEKLGIQEKNGKIHVPVVAKIPAHMMGSGIGASSSASTDYDIMASNPEDLGVADLKLGDIVAIQDHDNSYGVGKYRKGAVSIGVVVHSACVSAGHGPGVVVIMTGDESKILPEEVERANISDYL 280
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3dclD01    3dclD02       3dclD03 D:24-62 tm1086 domain          3dclD02 D:10-23,D:63-139  [code=2.40.10.170, no name defined]                3dclD01 D:-1-9,D:140-280 tm1086 (SG structure) domain                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhh..eeeeeee.........ee.....ee.......ee...................eeeee..hhhhhhhhhhhh....eeee........eeeeeeee....eeeee.hhhhhh......eeeeee.............ee...hhhhhh....ee....eeeee.eeehhhhh.............ee....hhhhhh........eeeeeeee......eeeeeeeeeeee............eeeeeeeee...eeeee....hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3dcl D  -1 GHmRTNKDRLVRISVVGEIAPAKmRSPYSVTTEGTVRVIPVLGGITYNVKVGDSAYGWAGDHVEPGVSVmARRKEEEIPLmTLSCIGNEVIVmSGDAKGSRGFVTGKHGGVNHVLVHFEEEVLGKLmVGDKILIKAWGQGLKLLDHPDVKVmNIDPDLFEKLGIQEKNGKIHVPVVAKIPAHmmGSGIGASSSASTDYDImASNPEDLGVADLKLGDIVAIQDHDNSYGVGKYRKGAVSIGVVVHSACVSAGHGPGVVVImTGDESKILPEEVERANISDYL 280
                              |      8        18   |    28        38        48        58        68        78|       88  |     98       108       118      |128       138       148 |     158       168       178  ||   188       198|      208       218       228       238       248       258|      268       278  
                              1-MSE               22-MSE                                        68-MSE     79-MSE      91-MSE                           125-MSE                  150-MSE                        181-MSE           199-MSE                                                     259-MSE                 
                                                                                                                                                                                                                 182-MSE

Chain E from PDB  Type:PROTEIN  Length:282
 aligned with Q9X0H2_THEMA | Q9X0H2 from UniProtKB/TrEMBL  Length:282

    Alignment length:282
                             1                                                                                                                                                                                                                                                                                        
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279  
         Q9X0H2_THEMA     - -MRTNKDRLVRISVVGEIAPAKMRSPYSVTTEGTVRVIPVLGGITYNVKVGDSAYGWAGDHVEPGVSVMARRKEEEIPLMTLSCIGNEVIVMSGDAKGSRGFVTGKHGGVNHVLVHFEEEVLGKLMVGDKILIKAWGQGLKLLDHPDVKVMNIDPDLFEKLGIQEKNGKIHVPVVAKIPAHMMGSGIGASSSASTDYDIMASNPEDLGVADLKLGDIVAIQDHDNSYGVGKYRKGAVSIGVVVHSACVSAGHGPGVVVIMTGDESKILPEEVERANISDYLV 281
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3dclE01   3dclE02       3dclE03 E:24-62 tm1086 domain          3dclE02 E:10-23,E:63-139  [code=2.40.10.170, no name defined]                3dclE01 E:0-9,E:140-281 tm1086 (SG structure) domain                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhh..eeeeeee.........ee.....ee.......ee...................eeeee..hhhhhhhhhhhh....eeee........eeeeeeee....eeeee.hhhhhh......eeeeee.............ee...hhhhhh....eee..eeeeee.eeehhhhh.............ee....hhhhhh........eeeeeeee......eeeeeeeeeeee............eeeeeeeee...eeeee....hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3dcl E   0 HmRTNKDRLVRISVVGEIAPAKmRSPYSVTTEGTVRVIPVLGGITYNVKVGDSAYGWAGDHVEPGVSVmARRKEEEIPLmTLSCIGNEVIVmSGDAKGSRGFVTGKHGGVNHVLVHFEEEVLGKLmVGDKILIKAWGQGLKLLDHPDVKVmNIDPDLFEKLGIQEKNGKIHVPVVAKIPAHmmGSGIGASSSASTDYDImASNPEDLGVADLKLGDIVAIQDHDNSYGVGKYRKGAVSIGVVVHSACVSAGHGPGVVVImTGDESKILPEEVERANISDYLV 281
                             |       9        19  |     29        39        49        59        69        79        89 |      99       109       119     | 129       139       149|      159       169       179 ||    189       199       209       219       229       239       249       259       269       279  
                             1-MSE               22-MSE                                        68-MSE     79-MSE      91-MSE                           125-MSE                  150-MSE                        181-MSE           199-MSE                                                     259-MSE                  
                                                                                                                                                                                                                182-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3DCL)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Few Secondary Structures (1120)

Architecture: Irregular (1120)

Topology: tm1086 fold (1)

Homologous Superfamily: tm1086 domain (1)

Thermotoga maritima. Organism_taxid: 2336. (1)

1a	3dclA03	A:24-62
1b	3dclB03	B:24-62
1c	3dclC03	C:24-62
1d	3dclD03	D:24-62
1e	3dclE03	E:24-62

Class: Mainly Beta (13760)

Architecture: 3-layer Sandwich (102)

Topology: tm1086 (SG structure) fold (1)

Homologous Superfamily: tm1086 (SG structure) domain (1)

Thermotoga maritima. Organism_taxid: 2336. (1)

2a	3dclD01	D:-1-9,D:140-280
2b	3dclE01	E:0-9,E:140-281
2c	3dclB01	B:0-9,B:140-280
2d	3dclA01	A:-1-9,A:140-281
2e	3dclC01	C:0-9,C:140-279

Architecture: Beta Barrel (4804)

Topology: Thrombin, subunit H (1535)

Homologous Superfamily: [code=2.40.10.170, no name defined] (33)

Thermotoga maritima. Organism_taxid: 2336. (1)

3a	3dclA02	A:10-23,A:63-139
3b	3dclB02	B:10-23,B:63-139
3c	3dclC02	C:10-23,C:63-139
3d	3dclD02	D:10-23,D:63-139
3e	3dclE02	E:10-23,E:63-139

(no "Pfam Domain" information available for 3DCL)

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 3DCL)

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3dcl)

Biological Unit
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		Biological Unit 1	[ Jena3D ]

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	3dcl
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		Orientation in Membranes	:	OPM
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	Q9X0H2_THEMA \| Q9X0H2
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	Q9X0H2_THEMA \| Q9X0H2
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UniProtKB/TrEMBL
	Q9X0H2_THEMA \| Q9X0H2	:	3n99

(no "Related Entries Specified in the PDB File" available for 3DCL)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 86)

Sites (26, 26)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (3, 15)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File