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3DCL
Asym. Unit
Info
Asym.Unit (242 KB)
Biol.Unit 1 (449 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TM1086
Authors
:
M. Chruszcz, E. Evdokimova, M. Kudritska, A. Savchenko, A. Edwards, A. Joachimiak, W. Minor, Midwest Center For Structural Genomics
Date
:
03 Jun 08 (Deposition) - 05 Aug 08 (Release) - 05 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (2x)
Keywords
:
Tm1086, Sad, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Chruszcz, E. Evdokimova, M. Kudritska, A. Savchenko, A. Edwards, W. Minor
Crystal Structure Of Tm1086
To Be Published
[
close entry info
]
Hetero Components
(4, 86)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
2c: POTASSIUM ION (Kc)
2d: POTASSIUM ION (Kd)
2e: POTASSIUM ION (Ke)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3aj: SELENOMETHIONINE (MSEaj)
3ak: SELENOMETHIONINE (MSEak)
3al: SELENOMETHIONINE (MSEal)
3am: SELENOMETHIONINE (MSEam)
3an: SELENOMETHIONINE (MSEan)
3ao: SELENOMETHIONINE (MSEao)
3ap: SELENOMETHIONINE (MSEap)
3aq: SELENOMETHIONINE (MSEaq)
3ar: SELENOMETHIONINE (MSEar)
3as: SELENOMETHIONINE (MSEas)
3at: SELENOMETHIONINE (MSEat)
3au: SELENOMETHIONINE (MSEau)
3av: SELENOMETHIONINE (MSEav)
3aw: SELENOMETHIONINE (MSEaw)
3ax: SELENOMETHIONINE (MSEax)
3ay: SELENOMETHIONINE (MSEay)
3az: SELENOMETHIONINE (MSEaz)
3b: SELENOMETHIONINE (MSEb)
3ba: SELENOMETHIONINE (MSEba)
3bb: SELENOMETHIONINE (MSEbb)
3bc: SELENOMETHIONINE (MSEbc)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
12
Ligand/Ion
CHLORIDE ION
2
K
5
Ligand/Ion
POTASSIUM ION
3
MSE
55
Mod. Amino Acid
SELENOMETHIONINE
4
SO4
14
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:92 , GLY A:93 , LYS A:96
BINDING SITE FOR RESIDUE SO4 A 284
02
AC2
SOFTWARE
SER B:92 , GLY B:93 , LYS B:96
BINDING SITE FOR RESIDUE SO4 B 284
03
AC3
SOFTWARE
ARG B:10 , LYS B:133 , HOH B:370 , TYR C:45
BINDING SITE FOR RESIDUE SO4 B 285
04
AC4
SOFTWARE
SER C:92 , GLY C:93
BINDING SITE FOR RESIDUE SO4 C 284
05
AC5
SOFTWARE
SER D:92 , GLY D:93 , LYS D:96 , HOH D:410
BINDING SITE FOR RESIDUE SO4 D 284
06
AC6
SOFTWARE
LYS D:176 , GLU D:269 , GLU D:270
BINDING SITE FOR RESIDUE SO4 D 285
07
AC7
SOFTWARE
SER E:92 , GLY E:93 , LYS E:96 , HOH E:420
BINDING SITE FOR RESIDUE SO4 E 284
08
AC8
SOFTWARE
LYS A:176 , GLU A:269 , GLU A:270
BINDING SITE FOR RESIDUE SO4 A 285
09
AC9
SOFTWARE
ARG B:2 , HOH B:410 , ARG D:273 , HOH D:365
BINDING SITE FOR RESIDUE SO4 B 286
10
BC1
SOFTWARE
LYS C:48 , HIS C:115 , HOH C:299 , HOH C:355
BINDING SITE FOR RESIDUE CL C 285
11
BC2
SOFTWARE
LYS E:48 , HIS E:115 , HOH E:310 , HOH E:369
BINDING SITE FOR RESIDUE CL E 285
12
BC3
SOFTWARE
HIS D:180 , HOH D:304
BINDING SITE FOR RESIDUE CL D 286
13
BC4
SOFTWARE
LYS D:48 , HIS D:115 , HOH D:330 , HOH D:357
BINDING SITE FOR RESIDUE CL D 287
14
BC5
SOFTWARE
HIS C:144 , PRO C:145 , ASP C:146
BINDING SITE FOR RESIDUE CL C 286
15
BC6
SOFTWARE
HIS B:180 , HOH B:393 , HIS E:180
BINDING SITE FOR RESIDUE CL B 287
16
BC7
SOFTWARE
HIS A:180 , HOH A:341
BINDING SITE FOR RESIDUE CL A 286
17
BC8
SOFTWARE
LYS B:48 , HIS B:115 , HOH B:323 , HOH B:389
BINDING SITE FOR RESIDUE CL B 288
18
BC9
SOFTWARE
HIS C:180 , HOH C:301
BINDING SITE FOR RESIDUE CL C 287
19
CC1
SOFTWARE
LYS A:48 , HIS A:115 , HOH A:378 , HOH A:406
BINDING SITE FOR RESIDUE CL A 287
20
CC2
SOFTWARE
ASN E:4 , HOH E:363 , HOH E:382
BINDING SITE FOR RESIDUE CL E 286
21
CC3
SOFTWARE
HIS A:144 , ASP A:146 , LYS A:265
BINDING SITE FOR RESIDUE CL A 288
22
CC4
SOFTWARE
GLY E:41 , GLY E:42 , THR E:44 , GLU E:62 , GLY E:64 , SER E:66
BINDING SITE FOR RESIDUE K E 287
23
CC5
SOFTWARE
GLY A:41 , GLY A:42 , THR A:44 , GLU A:62 , GLY A:64 , SER A:66
BINDING SITE FOR RESIDUE K A 289
24
CC6
SOFTWARE
GLY C:41 , GLY C:42 , THR C:44 , GLU C:62 , GLY C:64 , SER C:66
BINDING SITE FOR RESIDUE K C 288
25
CC7
SOFTWARE
GLY D:41 , GLY D:42 , THR D:44 , GLU D:62 , GLY D:64 , SER D:66
BINDING SITE FOR RESIDUE K D 288
26
CC8
SOFTWARE
GLY B:41 , GLY B:42 , THR B:44 , GLU B:62 , GLY B:64 , SER B:66
BINDING SITE FOR RESIDUE K B 289
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(3, 15)
Info
all CATH domains
1a: CATH_3dclA03 (A:24-62)
1b: CATH_3dclB03 (B:24-62)
1c: CATH_3dclC03 (C:24-62)
1d: CATH_3dclD03 (D:24-62)
1e: CATH_3dclE03 (E:24-62)
2a: CATH_3dclD01 (D:-1-9,D:140-280)
2b: CATH_3dclE01 (E:0-9,E:140-281)
2c: CATH_3dclB01 (B:0-9,B:140-280)
2d: CATH_3dclA01 (A:-1-9,A:140-281)
2e: CATH_3dclC01 (C:0-9,C:140-279)
3a: CATH_3dclA02 (A:10-23,A:63-139)
3b: CATH_3dclB02 (B:10-23,B:63-139)
3c: CATH_3dclC02 (C:10-23,C:63-139)
3d: CATH_3dclD02 (D:10-23,D:63-139)
3e: CATH_3dclE02 (E:10-23,E:63-139)
View:
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Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
tm1086 fold
(1)
Homologous Superfamily
:
tm1086 domain
(1)
Thermotoga maritima. Organism_taxid: 2336.
(1)
1a
3dclA03
A:24-62
1b
3dclB03
B:24-62
1c
3dclC03
C:24-62
1d
3dclD03
D:24-62
1e
3dclE03
E:24-62
Class
:
Mainly Beta
(13760)
Architecture
:
3-layer Sandwich
(102)
Topology
:
tm1086 (SG structure) fold
(1)
Homologous Superfamily
:
tm1086 (SG structure) domain
(1)
Thermotoga maritima. Organism_taxid: 2336.
(1)
2a
3dclD01
D:-1-9,D:140-280
2b
3dclE01
E:0-9,E:140-281
2c
3dclB01
B:0-9,B:140-280
2d
3dclA01
A:-1-9,A:140-281
2e
3dclC01
C:0-9,C:140-279
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
[code=2.40.10.170, no name defined]
(33)
Thermotoga maritima. Organism_taxid: 2336.
(1)
3a
3dclA02
A:10-23,A:63-139
3b
3dclB02
B:10-23,B:63-139
3c
3dclC02
C:10-23,C:63-139
3d
3dclD02
D:10-23,D:63-139
3e
3dclE02
E:10-23,E:63-139
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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