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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE ANALYSIS OF SUCROSE HYDROLASE (SUH)- TRIS COMPLEX

Authors :   M. I. Kim, S. Rhee

Date :   29 Apr 08 (Deposition) - 15 Jul 08 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym./Biol. Unit : A

Keywords :   (Alpha/Beta)8-Barrel, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. I. Kim, H. S. Kim, J. Jung, S. Rhee
Crystal Structures And Mutagenesis Of Sucrose Hydrolase From Xanthomonas Axonopodis Pv. Glycines: Insight Into The Exclusively Hydrolytic Amylosucrase Fold.
J. Mol. Biol. V. 380 636 2008
PubMed-ID: 18565544 | Reference-DOI: 10.1016/J.JMB.2008.05.046
(for further references see the PDB file header)

Molecule 1 - SUCROSE HYDROLASE
	Chains	:	A
	EC Number	:	3.2.1.48
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET41B
	Expression System Strain	:	B834(DE3)PLYSS
	Expression System Vector Type	:	PLASMID
	Gene	:	SUPH
	Organism Scientific	:	XANTHOMONAS AXONOPODIS PV. GLYCINES
	Organism Taxid	:	92830
	Strain	:	8RA

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 14)

No.	Name	Count	Type	Full Name
1	MSE	13	Mod. Amino Acid	SELENOMETHIONINE
2	TRS	1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:137 , PHE A:140 , HIS A:391 , ASP A:392 , ARG A:515 , HOH A:784	BINDING SITE FOR RESIDUE TRS A 6646

(no "SS Bond" information available for 3CZE)

(no "Cis Peptide Bond" information available for 3CZE)

(no "SAP(SNP)/Variant" information available for 3CZE)

(no "PROSITE Motif" information available for 3CZE)

(no "Exon" information available for 3CZE)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:600
 aligned with Q6UVM5_9XANT | Q6UVM5 from UniProtKB/TrEMBL  Length:644

    Alignment length:632
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635  
         Q6UVM5_9XANT     6 IDPPALRAAFAGPLDPQHAEVLLSRYDQHASRLLDALHALYGQRADYASWLAQWLGEVGDIARQRPQALQTLDSTRHAGWFGQPHMLGYSAYADRFAGTLQGVAERVPYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRTVPDRYEATLGQVFPHTAPGNFTWVDDTAQWMWTTFYPYQWDLNWSNPAVFGDMALAMLRLANLGVEAFRLDSTAYLWKRIGTDCMNQSEAHTLLVALRAVTDIVAPAVVMKAEAIVPMTQLPPYFGSGVDEGHECHLAYHSTLMAAGWSALALQRGDILHNVIAHSPPLPRHCAWLSYVRCHDDIGWNVLQHEACGNAAQPPFSLRDVARFYANAVPGSYARGESFQSSGDGVHGTNGMAAALAGIQAAQEAGDAAALAVAVDRLVLLYAIALAMPGVPLIYMGDELAMVNDPGYRDDPHRQHEGRWLHRPAMDWQLAAQRHDAKSLSGTVYRRLRGLIRQRAALGALAADQALASIALNDPRVFALTRGDSFIALHNFSDQLLDVELAAIGVDGWTLLAIDDAIGGAAARGDGSIVLPPYGVRWLQR 637
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh..----hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..hhhhh....eeeehhhhhhhhhhhhhhhhhhhhhhh..eeee...eee....hhhhh.eeeeeee.....hhhhhhhhhhhhhh...eeeeeee..eee..hhhhhhhhh.hhhhhh...ee..hhhhhhhhh.....------..eeee....eeee......eee....hhhhhhhhhhhhhhhhhh.eeeeeeehhhhh..........hhhhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhh.hhhhhhhhhh........eeeee.......hhhhhhhhhh........hhhhhhhhhh..........ee.------...ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee.hhhhh...hhhhhhh.....hhhhhhh...hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....eeee......eeeeee...eeeeee.....eeehhhhh....ee.----------------.eee....eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cze A   6 IDPPALRAAFAGPL----AEVLLSRYDQHASRLLDALHALYGQRADYASWLAQWLGEVGDIARQRPQALQTLDSTRHAGWFGQPHmLGYSAYADRFAGTLQGVAERVPYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRTVPDRYEATLGQV------GNFTWVDDTAQWmWTTFYPYQWDLNWSNPAVFGDmALAmLRLANLGVEAFRLDSTAYLWKRIGTDCmNQSEAHTLLVALRAVTDIVAPAVVmKAEAIVPmTQLPPYFGSGVDEGHECHLAYHSTLmAAGWSALALQRGDILHNVIAHSPPLPRHCAWLSYVRCHDDIGWNVLQHEACGNAAQPPFSLRDVARFYANAVPGSYARGESF------VHGTNGmAAALAGIQAAQEAGDAAALAVAVDRLVLLYAIALAmPGVPLIYmGDELAmVNDPGYRDDPHRQHEGRWLHRPAmDWQLAAQRHDAKSLSGTVYRRLRGLIRQRAALGALAADQALASIALNDPRVFALTRGDSFIALHNFSDQLLDVELAAIGVDGWTL----------------SIVLPPYGVRWLQR 637
                                    15   |    25        35        45        55        65        75        85     |  95       105       115       125       135       145       155       165       175       185       195       205       215     |   -  |    235    |  245       255      |265|      275       285       295       305       315   |   325 |     335       345       355       365       375       385       395       405       415       425       435      |445  |    455       465       475       485      |495  |    505       515      |525       535       545       555       565       575       585       595       605 |       -       625       635  
                                        19   24                                                                 91-MSE                                                                                                                           221    228         240-MSE               262-MSE                         294-MSE                  319-MSE 327-MSE                   353-MSE                                                                           435    442     |                                 484-MSE 492-MSE |                     522-MSE                                                                              607              624             
                                                                                                                                                                                                                                                                                              266-MSE                                                                                                                                                                               448-MSE                                           498-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3CZE)

(no "CATH Domain" information available for 3CZE)

(no "Pfam Domain" information available for 3CZE)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (Q6UVM5_9XANT | Q6UVM5)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

Asymmetric/Biological Unit
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	3.2.1.48
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 14)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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