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(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS OF SUCROSE HYDROLASE(SUH) E322Q-GLUCOSE COMPLEX
 
Authors :  M. I. Kim, S. Rhee
Date :  29 Apr 08  (Deposition) - 15 Jul 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  (Alpha/Beta)8-Barrel, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. I. Kim, H. S. Kim, J. Jung, S. Rhee
Crystal Structures And Mutagenesis Of Sucrose Hydrolase From Xanthomonas Axonopodis Pv. Glycines: Insight Into The Exclusively Hydrolytic Amylosucrase Fold.
J. Mol. Biol. V. 380 636 2008
PubMed-ID: 18565544  |  Reference-DOI: 10.1016/J.JMB.2008.05.046
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SUCROSE HYDROLASE
    Chains: A
    EC Number: 3.2.1.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET41B
    Expression System Strain: B834(DE3)PLYSS
    Expression System Vector Type: PLASMID
    Gene: SUPH
    Mutation: YES
    Organism Scientific: XANTHOMONAS AXONOPODIS PV. GLYCINES
    Organism Taxid: 92830
    Strain: 8RA

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1GLC1Ligand/IonALPHA-D-GLUCOSE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:137 , PHE A:244 , ARG A:278 , ASP A:280 , GLN A:322 , HIS A:391 , ASP A:392 , ARG A:515 , HOH A:923 , HOH A:960BINDING SITE FOR RESIDUE GLC A 3497

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3CZL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3CZL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3CZL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3CZL)

(-) Exons   (0, 0)

(no "Exon" information available for 3CZL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:612
 aligned with Q6UVM5_9XANT | Q6UVM5 from UniProtKB/TrEMBL  Length:644

    Alignment length:631
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635 
         Q6UVM5_9XANT     6 IDPPALRAAFAGPLDPQHAEVLLSRYDQHASRLLDALHALYGQRADYASWLAQWLGEVGDIARQRPQALQTLDSTRHAGWFGQPHMLGYSAYADRFAGTLQGVAERVPYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRTVPDRYEATLGQVFPHTAPGNFTWVDDTAQWMWTTFYPYQWDLNWSNPAVFGDMALAMLRLANLGVEAFRLDSTAYLWKRIGTDCMNQSEAHTLLVALRAVTDIVAPAVVMKAEAIVPMTQLPPYFGSGVDEGHECHLAYHSTLMAAGWSALALQRGDILHNVIAHSPPLPRHCAWLSYVRCHDDIGWNVLQHEACGNAAQPPFSLRDVARFYANAVPGSYARGESFQSSGDGVHGTNGMAAALAGIQAAQEAGDAAALAVAVDRLVLLYAIALAMPGVPLIYMGDELAMVNDPGYRDDPHRQHEGRWLHRPAMDWQLAAQRHDAKSLSGTVYRRLRGLIRQRAALGALAADQALASIALNDPRVFALTRGDSFIALHNFSDQLLDVELAAIGVDGWTLLAIDDAIGGAAARGDGSIVLPPYGVRWLQ 636
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh....eeeehhhhhhhhhhhhhhhhhhhhhhh..eeee...eee....hhhhh.eeeeeee.hhhhhhhhhhhhhhhhhhh..eeeeee...eee..hhhhhhhhh.hhhhhh...ee..hhhhhhhhh.....-----...eeee....eeee......eee....hhhhhhhhhhhhhhhhhh.eeeeee.hhhhh..........hhhhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhhhhhhhhhh........eeeee.......hhhhhhhhhh........hhhhhhhhhh..........ee..-----...ee.hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh...hhhhhhhhhhh.hhhhhhh...hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....eeee......eeeeee...eeeeee.....eeehhhhhh.........---------.....eee....eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3czl A   6 IDPPALRAAFAGPLDPQHAEVLLSRYDQHASRLLDALHALYGQRADYASWLAQWLGEVGDIARQRPQALQTLDSTRHAGWFGQPHMLGYSAYADRFAGTLQGVAERVPYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRTVPDRYEATLGQV-----PGNFTWVDDTAQWMWTTFYPYQWDLNWSNPAVFGDMALAMLRLANLGVEAFRLDSTAYLWKRIGTDCMNQSEAHTLLVALRAVTDIVAPAVVMKAQAIVPMTQLPPYFGSGVDEGHECHLAYHSTLMAAGWSALALQRGDILHNVIAHSPPLPRHCAWLSYVRCHDDIGWNVLQHEACGNAAQPPFSLRDVARFYANAVPGSYARGESFQ-----VHGTNGMAAALAGIQAAQEAGDAAALAVAVDRLVLLYAIALAMPGVPLIYMGDELAMVNDPGYRDDPHRQHEGRWLHRPAMDWQLAAQRHDAKSLSGTVYRRLRGLIRQRAALGALAADQALASIALNDPRVFALTRGDSFIALHNFSDQLLDVELAAIGVDGWTLLAI---------RGDGSIVLPPYGVRWLQ 636
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215     |   - |     235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435|     |445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605    |    -    |  625       635 
                                                                                                                                                                                                                                                 221   227                                                                                                                                                                                                              436   442                                                                                                                                                                     610       620
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3CZL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3CZL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3CZL)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q6UVM5_9XANT | Q6UVM5)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

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  3.2.1.48
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q6UVM5_9XANT | Q6UVM5: 3cze 3czg 3czk

(-) Related Entries Specified in the PDB File

3cze THE SAME PROTEIN COMPLEXED WITH GLUCOSE
3czg
3czk