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(-) Description

Title :  CRYSTAL STRUCTURE OF AN ALPHA/BETA HYDROLASE (YP_496220.1) FROM NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 AT 1.50 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  10 Jan 08  (Deposition) - 22 Jan 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Yp_496220. 1, An Alpha/Beta Hydrolase, Alpha/Beta Hydrolase Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of An Alpha/Beta Hydrolase (Yp_496220. 1) From Novosphingobium Aromaticivorans Dsm 12444 At 1. 50 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ALPHA/BETA HYDROLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YP_496220.1, SARO_0941
    Mutation: YES
    Organism Scientific: NOVOSPHINGOBIUM AROMATICIVORANS
    Organism Taxid: 279238
    Strain: DSM 12444

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 28)

Asymmetric/Biological Unit (4, 28)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2CL2Ligand/IonCHLORIDE ION
3EDO14Ligand/Ion1,2-ETHANEDIOL
4MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPRO A:204 , ALA A:207 , HOH A:349 , HOH A:352 , HOH A:357 , HOH A:363 , HOH A:424BINDING SITE FOR RESIDUE CA A 285
02AC2SOFTWAREASP A:67 , GLU A:282 , HOH A:410 , HOH A:446 , HOH A:476 , HOH A:505 , HOH A:525BINDING SITE FOR RESIDUE CA A 286
03AC3SOFTWAREGLY A:210 , HOH A:310 , HOH A:398BINDING SITE FOR RESIDUE CL A 287
04AC4SOFTWAREPHE A:151 , GLU A:152 , HIS A:156BINDING SITE FOR RESIDUE CL A 288
05AC5SOFTWAREGLN A:176 , THR A:267 , ASP A:269 , GLU A:270 , EDO A:291 , HOH A:318 , HOH A:490BINDING SITE FOR RESIDUE EDO A 289
06AC6SOFTWAREASP A:46 , ARG A:50 , ASP A:269BINDING SITE FOR RESIDUE EDO A 290
07AC7SOFTWAREGLN A:176 , ARG A:179 , ARG A:183 , ASP A:269 , EDO A:289BINDING SITE FOR RESIDUE EDO A 291
08AC8SOFTWARETYR A:8 , THR A:10 , MSE A:75 , PRO A:271 , HOH A:322 , HOH A:487BINDING SITE FOR RESIDUE EDO A 292
09AC9SOFTWAREALA A:2 , TYR A:4 , ASP A:6 , GLU A:255 , LEU A:256 , VAL A:257 , ARG A:279 , HOH A:335BINDING SITE FOR RESIDUE EDO A 293
10BC1SOFTWARETRP A:218 , ARG A:251 , EDO A:297BINDING SITE FOR RESIDUE EDO A 294
11BC2SOFTWAREGLU A:96 , ASN A:117 , ALA A:119 , EDO A:296BINDING SITE FOR RESIDUE EDO A 295
12BC3SOFTWAREILE A:95 , GLU A:96 , ARG A:120 , EDO A:295 , HOH A:443 , HOH A:611BINDING SITE FOR RESIDUE EDO A 296
13BC4SOFTWARETRP A:154 , ASP A:216 , TRP A:218 , EDO A:294 , HOH A:401 , HOH A:614BINDING SITE FOR RESIDUE EDO A 297
14BC5SOFTWAREARG A:149 , ALA A:160 , SER A:164 , HOH A:473BINDING SITE FOR RESIDUE EDO A 298
15BC6SOFTWAREASP A:13 , LEU A:15 , LYS A:72 , ASP A:73 , HOH A:609BINDING SITE FOR RESIDUE EDO A 299
16BC7SOFTWAREPRO A:35 , GLY A:36 , LEU A:37 , MSE A:62 , ARG A:65 , LEU A:105 , GLY A:106 , HOH A:586BINDING SITE FOR RESIDUE EDO A 300
17BC8SOFTWAREHIS A:18 , ASN A:40 , ARG A:42 , GLU A:61 , GLY A:66 , ASP A:67BINDING SITE FOR RESIDUE EDO A 301
18BC9SOFTWAREPRO A:118 , MSE A:155 , HIS A:156 , HOH A:329 , HOH A:483 , HOH A:529 , HOH A:618BINDING SITE FOR RESIDUE EDO A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BWX)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1His A:264 -Ala A:265

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3BWX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3BWX)

(-) Exons   (0, 0)

(no "Exon" information available for 3BWX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:285
 aligned with Q2G9T7_NOVAD | Q2G9T7 from UniProtKB/TrEMBL  Length:284

    Alignment length:285
                             1                                                                                                                                                                                                                                                                                           
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279     
         Q2G9T7_NOVAD     - -MAEYEDRYWTSSDGLRLHFRAYEGDISRPPVLCLPGLTRNARDFEDLATRLAGDWRVLCPEMRGRGDSDYAKDPMTYQPMQYLQDLEALLAQEGIERFVAIGTSLGGLLTMLLAAANPARIAAAVLNDVGPEVSPEGLERIRGYVGQGRNFETWMHAARALQESSGDVYPDWDITQWLRYAKRIMVLGSSGRIAFDYDMKIAEPFEAPAGATPQVDMWPLFDALATRPLLVLRGETSDILSAQTAAKMASRPGVELVTLPRIGHAPTLDEPESIAAIGRLLERV 284
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3bwxA00 A:0-284  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee.....eeeeeee........eeee.....hhhhhhhhhhhhh....eeee............hhhhhhhhhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhh...eeeeeee......hhhhhhhhhhhh....ee.hhhhhhhhhhhhhh......hhhhhhhhhhhheee.....eee..hhhhhh.............hhhhhhhhh...eeeeee......hhhhhhhhhh...eeeeee..........hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bwx A   0 GmAEYEDRYWTSSDGLRLHFRAYEGDISRPPVLCLPGLTRNARDFEDLATRLAGDWRVLCPEmRGRGDSDYAKDPmTYQPmQYLQDLEALLAQEGIERFVAIGTSLGGLLTmLLAAANPARIAAAVLNDVGPEVSPEGLERIRGYVGQGRNFETWmHAARALQESSGDVYPDWDITQWLRYAKRImVLGSSGRIAFDYDmKIAEPFEAPVGATPQVDmWPLFDALATRPLLVLRGETSDILSAQTAAKmASRPGVELVTLPRIGHAPTLDEPESIAAIGRLLERV 284
                             |       9        19        29        39        49        59  |     69     |  79|       89        99       109 |     119       129       139       149     | 159       169       179     | 189       199       209       219       229       239       249       259       269       279     
                             |                                                           62-MSE       75-MSE|                            111-MSE                                     155-MSE                       185-MSE       199-MSE           217-MSE                        248-MSE                                
                             1-MSE                                                                         80-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3BWX)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BWX)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q2G9T7_NOVAD | Q2G9T7)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

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  Cis Peptide Bonds
    His A:264 - Ala A:265   [ RasMol ]  
 

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