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Asym. Unit
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Asym.Unit (61 KB)
Biol.Unit 1 (54 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN ALPHA/BETA HYDROLASE (YP_496220.1) FROM NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 AT 1.50 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
10 Jan 08 (Deposition) - 22 Jan 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Yp_496220. 1, An Alpha/Beta Hydrolase, Alpha/Beta Hydrolase Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of An Alpha/Beta Hydrolase (Yp_496220. 1) From Novosphingobium Aromaticivorans Dsm 12444 At 1. 50 A Resolution
To Be Published
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Hetero Components
(4, 28)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
CL
2
Ligand/Ion
CHLORIDE ION
3
EDO
14
Ligand/Ion
1,2-ETHANEDIOL
4
MSE
10
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:204 , ALA A:207 , HOH A:349 , HOH A:352 , HOH A:357 , HOH A:363 , HOH A:424
BINDING SITE FOR RESIDUE CA A 285
02
AC2
SOFTWARE
ASP A:67 , GLU A:282 , HOH A:410 , HOH A:446 , HOH A:476 , HOH A:505 , HOH A:525
BINDING SITE FOR RESIDUE CA A 286
03
AC3
SOFTWARE
GLY A:210 , HOH A:310 , HOH A:398
BINDING SITE FOR RESIDUE CL A 287
04
AC4
SOFTWARE
PHE A:151 , GLU A:152 , HIS A:156
BINDING SITE FOR RESIDUE CL A 288
05
AC5
SOFTWARE
GLN A:176 , THR A:267 , ASP A:269 , GLU A:270 , EDO A:291 , HOH A:318 , HOH A:490
BINDING SITE FOR RESIDUE EDO A 289
06
AC6
SOFTWARE
ASP A:46 , ARG A:50 , ASP A:269
BINDING SITE FOR RESIDUE EDO A 290
07
AC7
SOFTWARE
GLN A:176 , ARG A:179 , ARG A:183 , ASP A:269 , EDO A:289
BINDING SITE FOR RESIDUE EDO A 291
08
AC8
SOFTWARE
TYR A:8 , THR A:10 , MSE A:75 , PRO A:271 , HOH A:322 , HOH A:487
BINDING SITE FOR RESIDUE EDO A 292
09
AC9
SOFTWARE
ALA A:2 , TYR A:4 , ASP A:6 , GLU A:255 , LEU A:256 , VAL A:257 , ARG A:279 , HOH A:335
BINDING SITE FOR RESIDUE EDO A 293
10
BC1
SOFTWARE
TRP A:218 , ARG A:251 , EDO A:297
BINDING SITE FOR RESIDUE EDO A 294
11
BC2
SOFTWARE
GLU A:96 , ASN A:117 , ALA A:119 , EDO A:296
BINDING SITE FOR RESIDUE EDO A 295
12
BC3
SOFTWARE
ILE A:95 , GLU A:96 , ARG A:120 , EDO A:295 , HOH A:443 , HOH A:611
BINDING SITE FOR RESIDUE EDO A 296
13
BC4
SOFTWARE
TRP A:154 , ASP A:216 , TRP A:218 , EDO A:294 , HOH A:401 , HOH A:614
BINDING SITE FOR RESIDUE EDO A 297
14
BC5
SOFTWARE
ARG A:149 , ALA A:160 , SER A:164 , HOH A:473
BINDING SITE FOR RESIDUE EDO A 298
15
BC6
SOFTWARE
ASP A:13 , LEU A:15 , LYS A:72 , ASP A:73 , HOH A:609
BINDING SITE FOR RESIDUE EDO A 299
16
BC7
SOFTWARE
PRO A:35 , GLY A:36 , LEU A:37 , MSE A:62 , ARG A:65 , LEU A:105 , GLY A:106 , HOH A:586
BINDING SITE FOR RESIDUE EDO A 300
17
BC8
SOFTWARE
HIS A:18 , ASN A:40 , ARG A:42 , GLU A:61 , GLY A:66 , ASP A:67
BINDING SITE FOR RESIDUE EDO A 301
18
BC9
SOFTWARE
PRO A:118 , MSE A:155 , HIS A:156 , HOH A:329 , HOH A:483 , HOH A:529 , HOH A:618
BINDING SITE FOR RESIDUE EDO A 302
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3bwxA00 (A:0-284)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Novosphingobium aromaticivorans dsm 12444. Organism_taxid: 279238. Strain: dsm 12444.
(1)
1a
3bwxA00
A:0-284
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Pfam Domains
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Chain A
Asymmetric Unit 1
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