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(-) Description

Title :  CRYSTAL STRUCTURE OF THE C2 DOMAIN OF BOVINE LACTADHERIN AT 1.67 ANGSTROM RESOLUTION
 
Authors :  C. Shao, V. A. Novakovic, J. F. Head, B. A. Seaton, G. E. Gilbert
Date :  13 Dec 07  (Deposition) - 25 Dec 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.67
Chains :  Asym./Biol. Unit :  A
Keywords :  Anticoagulation, Anti-Coagulation, Anticoagulant, Anti- Coagulant, Membrane Binding, Phosphatidyl-Serine Binding, Phosphatidylserine Binding, Blood Coagulation Factor V C2 Homologue, Blood Coagulation Factor Viii C2 Homologue, Milk Fat Globule, Apoptosis, Discoidin Domain, Fa58C, F5_f8_type_c, Alternative Splicing, Cell Adhesion, Egf-Like Domain, Fertilization, Glycoprotein, Blood Clotting (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Shao, V. A. Novakovic, J. F. Head, B. A. Seaton, G. E. Gilbert
Crystal Structure Of Lactadherin C2 Domain At 1. 7A Resolution With Mutational And Computational Analyses Of Its Membrane-Binding Motif.
J. Biol. Chem. V. 283 7230 2008
PubMed-ID: 18160406  |  Reference-DOI: 10.1074/JBC.M705195200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LACTADHERIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: F5/8 TYPE C 2, C2, RESIDUES 270-427
    Gene: MFGE8
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Synonym: MILK FAT GLOBULE-EGF FACTOR 8, MFG-E8, MGP57/53, PAS-6/PAS-7 GLYCOPROTEIN, MFGM, SPERM SURFACE PROTEIN SP47, BP47, COMPONENTS 15/16

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3BN6)

(-) Sites  (0, 0)

(no "Site" information available for 3BN6)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:1 -A:158

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3BN6)

(-) PROSITE Motifs  (3, 3)

Asymmetric/Biological Unit (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FA58C_3PS50022 Coagulation factors 5/8 type C domain (FA58C) profile.MFGM_BOVIN109-265
270-427		  1-
A:1-158
2FA58C_1PS01285 Coagulation factors 5/8 type C domain (FA58C) signature 1.MFGM_BOVIN155-184
317-346		  1-
A:48-77
3FA58C_2PS01286 Coagulation factors 5/8 type C domain (FA58C) signature 2.MFGM_BOVIN249-265
411-427		  1-
A:142-158

(-) Exons   (0, 0)

(no "Exon" information available for 3BN6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:158
 aligned with MFGM_BOVIN | Q95114 from UniProtKB/Swiss-Prot  Length:427

    Alignment length:158
                                   279       289       299       309       319       329       339       349       359       369       379       389       399       409       419        
           MFGM_BOVIN   270 CTEPLGLKDNTIPNKQITASSYYKTWGLSAFSWFPYYARLDNQGKFNAWTAQTNSASEWLQIDLGSQKRVTGIITQGARDFGHIQYVAAYRVAYGDDGVTWTEYKDPGASESKIFPGNMDNNSHKKNIFETPFQARFVRIQPVAWHNRITLRVELLGC 427
               SCOP domains d3bn6a_ A: automated matches                                                                                                                                   SCOP domains
               CATH domains 3bn6A00 A:1-158 Galactose-binding domain-like                                                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee........hhh.eee....hhhhhhhhh.hhhhh..........ee.........eeeeeeeeeeeeeeeee.eee..eeeeeeeeeeeee......ee...........ee........eeeeeeeeeeeeeeeeeeeeee...eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) FA58C_3  PDB: A:1-158 UniProt: 270-427                                                                                                                         PROSITE (1)
                PROSITE (2) -----------------------------------------------FA58C_1  PDB: A:48-77         ----------------------------------------------------------------FA58C_2           PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bn6 A   1 CTEPLGLKDNTIPNKQITASSYYKTWGLSAFSWFPYYARLDNQGKFNAWTAQTNSASEWLQIDLGSQKRVTGIITQGARDFGHIQYVAAYRVAYGDDGVTWTEYKDPGASESKIFPGNMDNNSHKKNIFETPFQARFVRIQPVAWHNRITLRVELLGC 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BN6)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (MFGM_BOVIN | Q95114)
biological process
    GO:0001525    angiogenesis    Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels.
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0007338    single fertilization    The union of male and female gametes to form a zygote.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

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        MFGM_BOVIN | Q95114: 2pqs

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