Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA PHOSPHOHEPTOSE ISOMERASE
 
Authors :  J. R. Walker, E. Evdokimova, M. Kudritska, J. Osipiuk, A. Joachimiak, A. Savchenko, Midwest Center For Structural Genomics (Mcsg)
Date :  05 Dec 07  (Deposition) - 18 Dec 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Sis Domain, Alpha/Beta Protein, Lipopolysaccharide Biosynthesis, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Carbohydrate Metabolism, Cytoplasm, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. L. Taylor, K. M. Blakely, G. P. De Leon, J. R. Walker, F. Mcarthur, E. Evdokimova, K. Zhang, M. A. Valvano, G. D. Wright, M. S. Junop
Structure And Function Of Sedoheptulose-7-Phosphate Isomerase, A Critical Enzyme For Lipopolysaccharide Biosynthesis And A Target For Antibiotic Adjuvants.
J. Biol. Chem. V. 283 2835 2008
PubMed-ID: 18056714  |  Reference-DOI: 10.1074/JBC.M706163200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PHOSPHOHEPTOSE ISOMERASE
    Atcc: 15692
    Chains: A, B, C, D
    EC Number: 5.3.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: MODIFIED PET15B
    Expression System Strain: BL21-GOLD(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GMHA, PA4425
    Organism Scientific: PSEUDOMONAS AERUGINOSA PAO1
    Organism Taxid: 208964
    Strain: PAO1 / 1C / PRS 101 / LMG 12228
    Synonym: SEDOHEPTULOSE 7-PHOSPHATE ISOMERASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 23)

Asymmetric/Biological Unit (3, 23)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2MSE18Mod. Amino AcidSELENOMETHIONINE
3SO44Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:51 , SER A:54 , SER A:119 , THR A:120 , SER A:121 , SER A:124BINDING SITE FOR RESIDUE SO4 A 198
2AC2SOFTWARESER B:119 , THR B:120 , SER B:121 , SER B:124 , HOH B:219BINDING SITE FOR RESIDUE SO4 B 198
3AC3SOFTWARESER C:119 , THR C:120 , SER C:121 , SER C:124 , HOH C:199BINDING SITE FOR RESIDUE SO4 C 198
4AC4SOFTWAREASN D:51 , SER D:54 , SER D:119 , THR D:120 , SER D:121 , SER D:124BINDING SITE FOR RESIDUE SO4 D 198
5AC5SOFTWAREARG D:147BINDING SITE FOR RESIDUE CL D 199

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BJZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3BJZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3BJZ)

(-) PROSITE Motifs  (1, 4)

Asymmetric/Biological Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SISPS51464 SIS domain profile.GMHA_PSEAB36-197
 
 
 		  4A:36-194
B:36-195
C:36-195
D:36-195
GMHA_PSEAE36-197
 
 
 		  4A:36-194
B:36-195
C:36-195
D:36-195

(-) Exons   (0, 0)

(no "Exon" information available for 3BJZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:179
 aligned with GMHA_PSEAB | Q02H15 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:193
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191   
           GMHA_PSEAB     2 DMQHRIRQLFQASIETKQQALEVLPPYIEQASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSSTITSIANDYSYNEVFSKQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSKITARIQEVHLLAIHCLCDLIDRQLFG 194
               SCOP domains d3bjza_ A: Phosphoheptose isomerase GmhA1                                                                                                                                                         SCOP domains
               CATH domains 3bjzA00 A:2-194 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhh.........eee..--------------..hhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhh..eeeeee...............eeee....hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------------------------SIS  PDB: A:36-194 UniProt: 36-197                                                                                                                              PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bjz A   2 DmQHRIRQLFQASIETKQQALEVLPPYIEQASLVmVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALT--------------YNEVFSKQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREmLVVALTGRDGGGmASLLLPEDVEIRVPSKITARIQEVHLLAIHCLCDLIDRQLFG 194
                             |      11        21        31    |   41        51        61        71        81|        -     | 101       111       121       131       141       151|      161       171       181       191   
                             |                               36-MSE                                        82             97                                       139-MSE      152-MSE                                      
                             3-MSE                                                                                                                                                                                           


Chain A from PDB  Type:PROTEIN  Length:179
 aligned with GMHA_PSEAE | Q9HVZ0 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:193
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191   
           GMHA_PSEAE     2 DMQHRIRQLFQASIETKQQALEVLPPYIEQASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSSTITSIANDYSYNEVFSKQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSKITARIQEVHLLAIHCLCDLIDRQLFG 194
               SCOP domains d3bjza_ A: Phosphoheptose isomerase GmhA1                                                                                                                                                         SCOP domains
               CATH domains 3bjzA00 A:2-194 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhh.........eee..--------------..hhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhh..eeeeee...............eeee....hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------SIS  PDB: A:36-194 UniProt: 36-197                                                                                                                              PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bjz A   2 DmQHRIRQLFQASIETKQQALEVLPPYIEQASLVmVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALT--------------YNEVFSKQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREmLVVALTGRDGGGmASLLLPEDVEIRVPSKITARIQEVHLLAIHCLCDLIDRQLFG 194
                             |      11        21        31    |   41        51        61        71        81|        -     | 101       111       121       131       141       151|      161       171       181       191   
                             3-MSE                           36-MSE                                        82             97                                       139-MSE      152-MSE                                      


Chain B from PDB  Type:PROTEIN  Length:187
 aligned with GMHA_PSEAB | Q02H15 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:197
                              1                                                                                                                                                                                                  
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       
           GMHA_PSEAB     - --MDMQHRIRQLFQASIETKQQALEVLPPYIEQASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSSTITSIANDYSYNEVFSKQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSKITARIQEVHLLAIHCLCDLIDRQLFGS 195
               SCOP domains d3bjzb_ B: Phosphoheptose isomerase GmhA1                                                                                                                                                             SCOP domains
               CATH domains 3bjzB00 B:-1-195 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhh.........eee....-.---------hhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhh..eeeeeee..hhhhhhhh....eeeee...hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------SIS  PDB: B:36-195 UniProt: 36-197                                                                                                                               PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bjz B  -1 GHmDmQHRIRQLFQASIETKQQALEVLPPYIEQASLVmVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTD-S---------SYNEVFSKQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREmLVVALTGRDGGGmASLLLPEDVEIRVPSKITARIQEVHLLAIHCLCDLIDRQLFGS 195
                              | |    8        18        28       |38        48        58        68        78     | | -       |98       108       118       128       138|      148   |   158       168       178       188       
                              1-MSE                             36-MSE                                          84 |        96                                        139-MSE      152-MSE                                       
                                3-MSE                                                                             86                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:187
 aligned with GMHA_PSEAE | Q9HVZ0 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:197
                              1                                                                                                                                                                                                  
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       
           GMHA_PSEAE     - --MDMQHRIRQLFQASIETKQQALEVLPPYIEQASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSSTITSIANDYSYNEVFSKQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSKITARIQEVHLLAIHCLCDLIDRQLFGS 195
               SCOP domains d3bjzb_ B: Phosphoheptose isomerase GmhA1                                                                                                                                                             SCOP domains
               CATH domains 3bjzB00 B:-1-195 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhh.........eee....-.---------hhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhh..eeeeeee..hhhhhhhh....eeeee...hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------SIS  PDB: B:36-195 UniProt: 36-197                                                                                                                               PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bjz B  -1 GHmDmQHRIRQLFQASIETKQQALEVLPPYIEQASLVmVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTD-S---------SYNEVFSKQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREmLVVALTGRDGGGmASLLLPEDVEIRVPSKITARIQEVHLLAIHCLCDLIDRQLFGS 195
                              | |    8        18        28       |38        48        58        68        78     | | -       |98       108       118       128       138|      148   |   158       168       178       188       
                              1-MSE                             36-MSE                                          84 |        96                                        139-MSE      152-MSE                                       
                                3-MSE                                                                             86                                                                                                             


Chain C from PDB  Type:PROTEIN  Length:179
 aligned with GMHA_PSEAB | Q02H15 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:195
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190     
           GMHA_PSEAB     1 MDMQHRIRQLFQASIETKQQALEVLPPYIEQASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSSTITSIANDYSYNEVFSKQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSKITARIQEVHLLAIHCLCDLIDRQLFGS 195
               SCOP domains d3bjzc_ C: Phosphoheptose isomerase GmhA1                                                                                                                                                           SCOP domains
               CATH domains -3bjzC00 C:2-195 Glucose-6-phosphate isomerase like protein; domain    1                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh.---......eee...-------------..hhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhh..eeeeee...hhhhhhhh....eeee....hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -----------------------------------SIS  PDB: C:36-195 UniProt: 36-197                                                                                                                               PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bjz C   1 mDmQHRIRQLFQASIETKQQALEVLPPYIEQASLVmVNALLNEGKILSCGNGGSAGDAQHFSSELLNR---ERPSLPAVALTT-------------YNEVFSKQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREmLVVALTGRDGGGmASLLLPEDVEIRVPSKITARIQEVHLLAIHCLCDLIDRQLFGS 195
                            | |     10        20        30     |  40        50        60       | - |      80  |      -      |100       110       120       130       140       150 |     160       170       180       190     
                            1-MSE                             36-MSE                          68  72         83            97                                       139-MSE      152-MSE                                       
                              3-MSE                                                                                                                                                                                            


Chain C from PDB  Type:PROTEIN  Length:179
 aligned with GMHA_PSEAE | Q9HVZ0 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:195
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190     
           GMHA_PSEAE     1 MDMQHRIRQLFQASIETKQQALEVLPPYIEQASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSSTITSIANDYSYNEVFSKQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSKITARIQEVHLLAIHCLCDLIDRQLFGS 195
               SCOP domains d3bjzc_ C: Phosphoheptose isomerase GmhA1                                                                                                                                                           SCOP domains
               CATH domains -3bjzC00 C:2-195 Glucose-6-phosphate isomerase like protein; domain    1                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh.---......eee...-------------..hhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhh..eeeeee...hhhhhhhh....eeee....hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------SIS  PDB: C:36-195 UniProt: 36-197                                                                                                                               PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bjz C   1 mDmQHRIRQLFQASIETKQQALEVLPPYIEQASLVmVNALLNEGKILSCGNGGSAGDAQHFSSELLNR---ERPSLPAVALTT-------------YNEVFSKQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREmLVVALTGRDGGGmASLLLPEDVEIRVPSKITARIQEVHLLAIHCLCDLIDRQLFGS 195
                            | |     10        20        30     |  40        50        60       | - |      80  |      -      |100       110       120       130       140       150 |     160       170       180       190     
                            1-MSE                             36-MSE                          68  72         83            97                                       139-MSE      152-MSE                                       
                              3-MSE                                                                                                                                                                                            


Chain D from PDB  Type:PROTEIN  Length:176
 aligned with GMHA_PSEAB | Q02H15 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:194
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191    
           GMHA_PSEAB     2 DMQHRIRQLFQASIETKQQALEVLPPYIEQASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSSTITSIANDYSYNEVFSKQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSKITARIQEVHLLAIHCLCDLIDRQLFGS 195
               SCOP domains d3bjzd_ D: Phosphoheptose isomerase GmhA1                                                                                                                                                          SCOP domains
               CATH domains 3bjzD00 D:2-195 Glucose-6-phosphate isomerase like protein; domain     1                                                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh----.....eee...--------------.hhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhh..eeeeee...hhhhhh......eeee....hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------------------------SIS  PDB: D:36-195 UniProt: 36-197                                                                                                                               PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bjz D   2 DmQHRIRQLFQASIETKQQALEVLPPYIEQASLVmVNALLNEGKILSCGNGGSAGDAQHFSSELLNR----RPSLPAVALTT--------------NEVFSKQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREmLVVALTGRDGGGmASLLLPEDVEIRVPSKITARIQEVHLLAIHCLCDLIDRQLFGS 195
                             |      11        21        31    |   41        51        61      |  - |      81 |       -      |101       111       121       131       141       151|      161       171       181       191    
                             3-MSE                           36-MSE                          68   73        83             98                                      139-MSE      152-MSE                                       


Chain D from PDB  Type:PROTEIN  Length:176
 aligned with GMHA_PSEAE | Q9HVZ0 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:194
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191    
           GMHA_PSEAE     2 DMQHRIRQLFQASIETKQQALEVLPPYIEQASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSSTITSIANDYSYNEVFSKQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSKITARIQEVHLLAIHCLCDLIDRQLFGS 195
               SCOP domains d3bjzd_ D: Phosphoheptose isomerase GmhA1                                                                                                                                                          SCOP domains
               CATH domains 3bjzD00 D:2-195 Glucose-6-phosphate isomerase like protein; domain     1                                                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh----.....eee...--------------.hhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhh..eeeeee...hhhhhh......eeee....hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------SIS  PDB: D:36-195 UniProt: 36-197                                                                                                                               PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bjz D   2 DmQHRIRQLFQASIETKQQALEVLPPYIEQASLVmVNALLNEGKILSCGNGGSAGDAQHFSSELLNR----RPSLPAVALTT--------------NEVFSKQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREmLVVALTGRDGGGmASLLLPEDVEIRVPSKITARIQEVHLLAIHCLCDLIDRQLFGS 195
                             |      11        21        31    |   41        51        61      |  - |      81 |       -      |101       111       121       131       141       151|      161       171       181       191    
                             3-MSE                           36-MSE                          68   73        83             98                                      139-MSE      152-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BJZ)

(-) Gene Ontology  (10, 18)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (GMHA_PSEAB | Q02H15)
molecular function
    GO:0008968    D-sedoheptulose 7-phosphate isomerase activity    Catalysis of the reaction: D-sedoheptulose-7-phosphate = D-alpha,beta-D-heptose 7-phosphate.
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:2001061    D-glycero-D-manno-heptose 7-phosphate biosynthetic process    The chemical reactions and pathways resulting in the formation of a D-glycero-D-manno-heptose 7-phosphate.
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain A,B,C,D   (GMHA_PSEAE | Q9HVZ0)
molecular function
    GO:0008968    D-sedoheptulose 7-phosphate isomerase activity    Catalysis of the reaction: D-sedoheptulose-7-phosphate = D-alpha,beta-D-heptose 7-phosphate.
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:2001061    D-glycero-D-manno-heptose 7-phosphate biosynthetic process    The chemical reactions and pathways resulting in the formation of a D-glycero-D-manno-heptose 7-phosphate.
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0009103    lipopolysaccharide biosynthetic process    The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria.
    GO:0009244    lipopolysaccharide core region biosynthetic process    The chemical reactions and pathways resulting in the formation of the core region of bacterial lipopolysaccharides, which contains ten saccharide residues.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3bjz)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3bjz
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  GMHA_PSEAB | Q02H15
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  GMHA_PSEAE | Q9HVZ0
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  5.3.1.-
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  GMHA_PSEAB | Q02H15
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  GMHA_PSEAE | Q9HVZ0
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GMHA_PSEAE | Q9HVZ0: 1x92

(-) Related Entries Specified in the PDB File

1x92 CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA PHOSPHOHEPTOSE ISOMERASE IN COMPLEX WITH REACTION PRODUCT D-GLYCERO-D- MANNOPYRANOSE-7-PHOSPHATE
2i22 CRYSTAL STRUCTURE OF ESCHERICHIA COLI PHOSPHOHEPTOSE ISOMERASE IN COMPLEX WITH REACTION SUBSTRATE SEDOHEPTULOSE 7-PHOSPHATE
2i2w CRYSTAL STRUCTURE OF ESCHERICHIA COLI PHOSPHOHEPTOSE ISOMERASE