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3BJZ
Asym. Unit
Info
Asym.Unit (122 KB)
Biol.Unit 1 (116 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA PHOSPHOHEPTOSE ISOMERASE
Authors
:
J. R. Walker, E. Evdokimova, M. Kudritska, J. Osipiuk, A. Joachimiak, A. Savchenko, Midwest Center For Structural Genomics (Mcsg)
Date
:
05 Dec 07 (Deposition) - 18 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Sis Domain, Alpha/Beta Protein, Lipopolysaccharide Biosynthesis, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Carbohydrate Metabolism, Cytoplasm, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. L. Taylor, K. M. Blakely, G. P. De Leon, J. R. Walker, F. Mcarthur, E. Evdokimova, K. Zhang, M. A. Valvano, G. D. Wright, M. S. Junop
Structure And Function Of Sedoheptulose-7-Phosphate Isomerase, A Critical Enzyme For Lipopolysaccharide Biosynthesis And A Target For Antibiotic Adjuvants.
J. Biol. Chem. V. 283 2835 2008
(for further references see the
PDB file header
)
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Hetero Components
(3, 23)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
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Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
MSE
18
Mod. Amino Acid
SELENOMETHIONINE
3
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:51 , SER A:54 , SER A:119 , THR A:120 , SER A:121 , SER A:124
BINDING SITE FOR RESIDUE SO4 A 198
2
AC2
SOFTWARE
SER B:119 , THR B:120 , SER B:121 , SER B:124 , HOH B:219
BINDING SITE FOR RESIDUE SO4 B 198
3
AC3
SOFTWARE
SER C:119 , THR C:120 , SER C:121 , SER C:124 , HOH C:199
BINDING SITE FOR RESIDUE SO4 C 198
4
AC4
SOFTWARE
ASN D:51 , SER D:54 , SER D:119 , THR D:120 , SER D:121 , SER D:124
BINDING SITE FOR RESIDUE SO4 D 198
5
AC5
SOFTWARE
ARG D:147
BINDING SITE FOR RESIDUE CL D 199
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: SIS (A:36-194,B:36-195,C:36-195,D:36-19...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SIS
PS51464
SIS domain profile.
GMHA_PSEAB
36-197
4
A:36-194
B:36-195
C:36-195
D:36-195
GMHA_PSEAE
36-197
4
A:36-194
B:36-195
C:36-195
D:36-195
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3bjza_ (A:)
1b: SCOP_d3bjzb_ (B:)
1c: SCOP_d3bjzc_ (C:)
1d: SCOP_d3bjzd_ (D:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
SIS domain
(85)
Superfamily
:
SIS domain
(85)
Family
:
mono-SIS domain
(10)
Protein domain
:
Phosphoheptose isomerase GmhA1
(4)
Pseudomonas aeruginosa str. PAO1 (Pseudomonas aeruginosa PAO1) [TaxId: 208964]
(1)
1a
d3bjza_
A:
1b
d3bjzb_
B:
1c
d3bjzc_
C:
1d
d3bjzd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3bjzB00 (B:-1-195)
1b: CATH_3bjzA00 (A:2-194)
1c: CATH_3bjzC00 (C:2-195)
1d: CATH_3bjzD00 (D:2-195)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Glucose-6-phosphate isomerase like protein; domain 1
(105)
Pseudomonas aeruginosa pao1. Organism_taxid: 208964. Strain: pao1 / 1c/ prs 101 / lmg 12228.
(1)
1a
3bjzB00
B:-1-195
1b
3bjzA00
A:2-194
1c
3bjzC00
C:2-195
1d
3bjzD00
D:2-195
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (122 KB)
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