3BHM - JenaLib

Title :   CRYSTAL STRUCTURE OF HUMAN CARBONYL REDUCTASE 1 IN COMPLEX WITH S-HYDROXYMETHYLGLUTATHIONE

Authors :   R. L. Bateman, D. Rauh, K. M. Shokat

Date :   28 Nov 07 (Deposition) - 21 Oct 08 (Release) - 30 Dec 08 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A

Keywords :   Oxidoreductase, Acetylation, Cytoplasm, Nadp, Polymorphism (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. L. Bateman, D. Rauh, B. Tavshanjian, K. M. Shokat
Human Carbonyl Reductase 1 Is An S-Nitrosoglutathione Reductase
J. Biol. Chem. V. 283 35756 2008
PubMed-ID: 18826943 | Reference-DOI: 10.1074/JBC.M807125200
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 8)

Sites (8, 8)

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:57 , PHE A:58 , HOH A:522	BINDING SITE FOR RESIDUE SO4 A 401
2	AC2	SOFTWARE	LYS A:14 , GLY A:15 , HOH A:408 , HOH A:432	BINDING SITE FOR RESIDUE SO4 A 402
3	AC3	SOFTWARE	ARG A:118 , HOH A:539 , HOH A:599	BINDING SITE FOR RESIDUE SO4 A 403
4	AC4	SOFTWARE	LYS A:216 , GLY A:217 , ASP A:218 , LYS A:219 , HOH A:479	BINDING SITE FOR RESIDUE SO4 A 404
5	AC5	SOFTWARE	ALA A:93 , PHE A:94 , LYS A:95 , PHE A:102 , GLN A:105 , SER A:190 , SER A:191 , ALA A:192 , TYR A:193 , MET A:234 , HOH A:416 , HOH A:459 , HOH A:521 , HOH A:603	BINDING SITE FOR RESIDUE AHE A 304
6	AC6	SOFTWARE	LEU A:27 , SER A:139 , TYR A:193 , GLY A:228 , TRP A:229 , HOH A:561 , HOH A:603	BINDING SITE FOR RESIDUE AB3 A 307
7	AC7	SOFTWARE	ARG A:22 , ARG A:26 , ILE A:140 , ARG A:144 , GLU A:244	BINDING SITE FOR RESIDUE AB3 A 308
8	AC8	SOFTWARE	GLY A:11 , ASN A:13 , LYS A:14 , GLY A:15 , ILE A:16 , ARG A:37 , LEU A:61 , ASP A:62 , ILE A:63 , ASP A:64 , ASN A:89 , ALA A:90 , GLY A:91 , ILE A:92 , SER A:138 , TYR A:193 , LYS A:197 , PRO A:227 , GLY A:228 , TRP A:229 , THR A:232 , ASP A:233 , MET A:234 , ALA A:235 , HOH A:406 , HOH A:410 , HOH A:413 , HOH A:431 , HOH A:432 , HOH A:470 , HOH A:477 , HOH A:481 , HOH A:512 , HOH A:590	BINDING SITE FOR RESIDUE NAP A 309

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (2, 2)

PROSITE Motifs (1, 1)

Exons (3, 3)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:274
 aligned with CBR1_HUMAN | P16152 from UniProtKB/Swiss-Prot  Length:277

    Alignment length:274
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273    
           CBR1_HUMAN     4 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKATKSPEEGAETPVYLALLPPDAEGPHGQFVSEKRVEQW 277
               SCOP domains d3bhma_ A: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase                                                                                                                                                                                                                  SCOP domains
               CATH domains 3bhmA00 A:3-276 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee....hhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhhhhhhh.eeeeee............hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee..hhhhhhhhh.hhhhhhhhhh...hhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee...............hhhhhhhhhhhhhh...........eee..eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------I------------------------------------------S-------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: A:180-208    -------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: A:3-96 UniProt: 1-97 [INCOMPLETE]                                             -----------------------------------Exon 1.3c  PDB: A:132-276 UniProt: 133-277                                                                                                        Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------------Exon 1.2a  PDB: A:96-132             ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript 1 (2)
                 3bhm A   3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKATKSPEEGAETPVYLALLPPDAEGPHGQFVSEKRVEQW 276
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (CBR1_HUMAN | P16152)

molecular function
	GO:0047021	15-hydroxyprostaglandin dehydrogenase (NADP+) activity	Catalysis of the reaction: NADP(+) + prostaglandin E(1) = 15-dehydro-prostaglandin E1 + H(+) + NADPH.
	GO:0004090	carbonyl reductase (NADPH) activity	Catalysis of the reaction: R-CHOH-R' + NADP+ = R-CO-R' + NADPH + H+.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a quinone or a similar acceptor molecule.
	GO:0050221	prostaglandin-E2 9-reductase activity	Catalysis of the reaction: (5Z,13E)-(15S)-9-alpha,11-alpha,15-trihydroxyprosta-5,13-dienoate + NADP+ = (5Z,13E)-(15S)-11-alpha,15-dihydroxy-9-oxoprosta-5,13-dienoate + NADPH.
biological process
	GO:0019371	cyclooxygenase pathway	The chemical reactions and pathways by which prostaglandins are formed from arachidonic acid, and in which prostaglandin-endoperoxide synthase (cyclooxygenase) catalyzes the committed step in the conversion of arachidonic acid to the prostaglandin-endoperoxides PGG2 and PGH2.
	GO:0017144	drug metabolic process	The chemical reactions and pathways involving a drug, a substance used in the diagnosis, treatment or prevention of a disease; as used here antibiotic substances (see antibiotic metabolism) are considered to be drugs, even if not used in medical or veterinary practice.
	GO:0030855	epithelial cell differentiation	The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0042373	vitamin K metabolic process	The chemical reactions and pathways involving any of the forms of vitamin K, quinone-derived vitamins which are involved in the synthesis of blood-clotting factors in mammals. Vitamin K substances share a methylated naphthoquinone ring structure and vary in the aliphatic side chains attached to the molecule.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:1903561	extracellular vesicle	Any vesicle that is part of the extracellular region.

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		Gly A:262 - Pro A:263	[ RasMol ]

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