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(-) Description

Title :  CRYSTAL STRUCTURE OF RECOMBINANT HUMAN ALPHA LACTALBUMIN
 
Authors :  K. Makabe
Date :  10 Jun 11  (Deposition) - 13 Jun 12  (Release) - 15 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Calcium Binding Protein, Glycoprotein, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. Makabe, T. Nakamura, K. Kuwajima
Structural Insights Into The Stability Perturbations Induce By N-Terminal Variation In Human And Goat Alpha-Lactalbumin
Protein Eng. Des. Sel. V. 26 165 2013
PubMed-ID: 23155056  |  Reference-DOI: 10.1093/PROTEIN/GZS093

(-) Compounds

Molecule 1 - ALPHA-LACTALBUMIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneLALBA, LYZL7
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymLACTOSE SYNTHASE B PROTEIN, LYSOZYME-LIKE PROTEIN 7

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:79 , ASP A:82 , ASP A:84 , ASP A:87 , ASP A:88 , HOH A:132BINDING SITE FOR RESIDUE CA A 124
2AC2SOFTWARELYS A:1 , THR A:4 , LYS A:5 , TYR A:36 , LYS A:99 , HOH A:173 , HOH A:179BINDING SITE FOR RESIDUE SO4 A 125

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:6 -A:120
2A:28 -A:111
3A:61 -A:77
4A:73 -A:91

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3B0I)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 1)

Asymmetric/Biological Unit (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_024526I46VLALBA_HUMANPolymorphism2232565AI27V

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 2)

Asymmetric/Biological Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LACTALBUMIN_LYSOZYME_2PS51348 Alpha-lactalbumin / lysozyme C family profile.LALBA_HUMAN20-142  1A:1-120
2LACTALBUMIN_LYSOZYME_1PS00128 Alpha-lactalbumin / lysozyme C signature.LALBA_HUMAN92-110  1A:73-91

(-) Exons   (4, 4)

Asymmetric/Biological Unit (4, 4)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000003010461ENSE00001113957chr12:48963829-48963671159LALBA_HUMAN1-45451A:0-2627
1.2ENST000003010462ENSE00001113961chr12:48963023-48962865159LALBA_HUMAN45-98541A:26-7954
1.3ENST000003010463ENSE00001113959chr12:48962375-4896230076LALBA_HUMAN98-123261A:79-10426
1.4ENST000003010464ENSE00001113958chr12:48961800-48961468333LALBA_HUMAN123-142201A:104-12017

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:121
 aligned with LALBA_HUMAN | P00709 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:121
                                    28        38        48        58        68        78        88        98       108       118       128       138 
          LALBA_HUMAN    19 AKQFTKCELSQLLKDIDGYGGIALPELICTMFHTSGYDTQAIVENNESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILDIKGIDYWLAHKALCTEKLEQWLC 139
               SCOP domains d3b0ia_ A: automated matches                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee....eee....ee...................hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------V--------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -LACTALBUMIN_LYSOZYME_2  PDB: A:1-120 UniProt: 20-142                                                                     PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------LACTALBUMIN_LYSOZYM----------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1  PDB: A:0-26      ----------------------------------------------------Exon 1.3  PDB: A:79-104   ---------------- Transcript 1 (1)
           Transcript 1 (2) --------------------------Exon 1.2  PDB: A:26-79 UniProt: 45-98                 ------------------------Exon 1.4          Transcript 1 (2)
                 3b0i A   0 MKQFTKCELSQLLKDIDGYGGIALPELICTMFHTSGYDTQAIVENNESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILDIKGIDYWLAHKALCTEKLEQWLC 120
                                     9        19        29        39        49        59        69        79        89        99       109       119 

   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3B0I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3B0I)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (LALBA_HUMAN | P00709)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0004461    lactose synthase activity    Catalysis of the reaction: UDP-galactose + D-glucose = UDP + lactose.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0006915    apoptotic process    A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
    GO:0007267    cell-cell signaling    Any process that mediates the transfer of information from one cell to another. This process includes signal transduction in the receiving cell and, where applicable, release of a ligand and any processes that actively facilitate its transport and presentation to the receiving cell. Examples include signaling via soluble ligands, via cell adhesion molecules and via gap junctions.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
    GO:0005989    lactose biosynthetic process    The chemical reactions and pathways resulting in the formation of lactose, the disaccharide galactopyranosyl-glucose.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0005796    Golgi lumen    The volume enclosed by the membranes of any cisterna or subcompartment of the Golgi apparatus, including the cis- and trans-Golgi networks.
    GO:0000139    Golgi membrane    The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LALBA_HUMAN | P007091a4v 1b9o 1cb3 1hml 3b0o 4l41

(-) Related Entries Specified in the PDB File

3b0k 3b0o