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(-) Description

Title :  CRYSTAL STRUCTURE OF THE RECEPTOR BINDING DOMAIN
 
Authors :  N. Nuemket, Y. Tanaka, K. Tsukamoto, T. Tsuji, K. Nakamura, S. Kozaki, M I. Tanaka
Date :  02 Jun 11  (Deposition) - 28 Dec 11  (Release) - 28 Dec 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Beta-Trefoil Fold, Beta-Sheet Jellyroll, Receptor Binding, Ganglioside, Extra-Cellular, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Nuemket, Y. Tanaka, K. Tsukamoto, T. Tsuji, K. Nakamura, S. Kozaki, M. Yao, I. Tanaka
Structural And Mutational Analyses Of The Receptor Binding Domain Of Botulinum D/C Mosaic Neurotoxin: Insight Into The Ganglioside Binding Mechanism
Biochem. Biophys. Res. Commun. V. 411 433 2011
PubMed-ID: 21749855  |  Reference-DOI: 10.1016/J.BBRC.2011.06.173

(-) Compounds

Molecule 1 - D/C MOSAIC NEUROTOXIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RECEPTOR BINDING DOMAIN(RESIDUES 857-1285)
    Gene: BONT
    Organism Scientific: CLOSTRIDIUM BOTULINUM
    Organism Taxid: 1491
    Synonym: NEUROTOXIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 28)

Asymmetric Unit (2, 28)
No.NameCountTypeFull Name
1MSE26Mod. Amino AcidSELENOMETHIONINE
2SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 15)
No.NameCountTypeFull Name
1MSE13Mod. Amino AcidSELENOMETHIONINE
2SO42Ligand/IonSULFATE ION
Biological Unit 2 (1, 13)
No.NameCountTypeFull Name
1MSE13Mod. Amino AcidSELENOMETHIONINE
2SO4-1Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:1156 , TYR A:1251 , TRP A:1252 , PHE A:1253 , HIS A:1255BINDING SITE FOR RESIDUE SO4 A 1
2AC2SOFTWAREARG A:1103 , LYS A:1106 , ARG A:1184 , ASN A:1254BINDING SITE FOR RESIDUE SO4 A 2

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3AZV)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Phe A:901 -Pro A:902
2Phe B:901 -Pro B:902

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3AZV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3AZV)

(-) Exons   (0, 0)

(no "Exon" information available for 3AZV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:418
 aligned with A5JGM8_CLOBO | A5JGM8 from UniProtKB/TrEMBL  Length:1285

    Alignment length:427
                                   867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      1157      1167      1177      1187      1197      1207      1217      1227      1237      1247      1257      1267      1277       
        A5JGM8_CLOBO    858 NEYFNSINDSKILSLQNKKNTLMDTSGYNAEVRVEGNVQLNPIFPFDFKLGSSGDDRGKVIVTQNENIVYNAMYESFSISFWIRINKWVSNLPGYTIIDSVKNNSGWSIGIISNFLVFTLKQNENSEQDINFSYDISKNAAGYNKWFFVTITTNMMGNMMIYINGKLIDTIKVKELTGINFSKTITFQMNKIPNTGLITSDSDNINMWIRDFYIFAKELDDKDINILFNSLQYTNVVKDYWGNDLRYDKEYYMINVNYMNRYMSKKGNGIVFNTRKNNNDFNEGYKIIIKRIRGNTNDTRVRGENVLYFNTTIDNKQYSLGMYKPSRNLGTDLVPLGALDQPMDEIRKYGSFIIQPCNTFDYYASQLFLSSNATTNRLGILSIGSYSFKLGDDYWFNHEYLIPVIKIEHYASLLESTSTHWVFVPAS 1284
               SCOP domains d3azva1 A:858-1076 automated matches                                                                                                                                                                                       d3azva2 A:1077-1284 automated matches                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhheeeeeeee..eeee......eeeee...ee.......eeee.......eeeee.hhhhhhhhh..eeeeeeeeeee........eeeeeee....eeeeeee..eeeeeee.....eeeeeee.............eeeeeeee...eeeeee..eeeeeee...........eeeeeeee...---------..eeeeeeeeee....hhhhhhhhhhhh..................eeeeee.hhh.eeeeee..eeeeee............eeeeeee............eeeeeee....eeeeee..........eeeeeee..hhhhhhhhh.eeeeeee....eeeeeee.........eeeeeeeeee.........eeeeeeeeee....hhhhhhhh.eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3azv A  858 NEYFNSINDSKILSLQNKKNTLmDTSGYNAEVRVEGNVQLNPIFPFDFKLGSSGDDRGKVIVTQNENIVYNAmYESFSISFWIRINKWVSNLPGYTIIDSVKNNSGWSIGIISNFLVFTLKQNENSEQDINFSYDISKNAAGYNKWFFVTITTNmmGNmmIYINGKLIDTIKVKELTGINFSKTITFQmNKIPN---------NINmWIRDFYIFAKELDDKDINILFNSLQYTNVVKDYWGNDLRYDKEYYmINVNYmNRYmSKKGNGIVFNTRKNNNDFNEGYKIIIKRIRGNTNDTRVRGENVLYFNTTIDNKQYSLGmYKPSRNLGTDLVPLGALDQPmDEIRKYGSFIIQPCNTFDYYASQLFLSSNATTNRLGILSIGSYSFKLGDDYWFNHEYLIPVIKIEHYASLLESTSTHWVFVPAS 1284
                                   867       877  |    887       897       907       917       927  |    937       947       957       967       977       987       997      1007    ||1017      1027      1037      1047   |     -   |  1067      1077      1087      1097      1107  |   1117  |   1127      1137      1147      1157      1167      1177 |    1187      1197  |   1207      1217      1227      1237      1247      1257      1267      1277       
                                                880-MSE                                           930-MSE                                                                          1012-MSE|                         1046-MSE1      1061  |                                          1110-MSE |   |                                                       1179-MSE             1200-MSE                                                                                
                                                                                                                                                                                    1013-MSE                                           1064-MSE                                            1116-MSE                                                                                                                                                                    
                                                                                                                                                                                       1016-MSE                                                                                                1120-MSE                                                                                                                                                                
                                                                                                                                                                                        1017-MSE                                                                                                                                                                                                                                                                       


Chain A from PDB  Type:PROTEIN  Length:418
 aligned with Q9LBR1_CLOBO | Q9LBR1 from UniProtKB/TrEMBL  Length:1285

    Alignment length:427
                                   867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      1157      1167      1177      1187      1197      1207      1217      1227      1237      1247      1257      1267      1277       
        Q9LBR1_CLOBO    858 NEYFNSINDSKILSLQNKKNTLMDTSGYNAEVRVEGNVQLNPIFPFDFKLGSSGDDRGKVIVTQNENIVYNAMYESFSISFWIRINKWVSNLPGYTIIDSVKNNSGWSIGIISNFLVFTLKQNENSEQDINFSYDISKNAAGYNKWFFVTITTNMMGNMMIYINGKLIDTIKVKELTGINFSKTITFQMNKIPNTGLITSDSDNINMWIRDFYIFAKELDDKDINILFNSLQYTNVVKDYWGNDLRYDKEYYMINVNYMNRYMSKKGNGIVFNTRKNNNDFNEGYKIIIKRIRGNTNDTRVRGENVLYFNTTIDNKQYSLGMYKPSRNLGTDLVPLGALDQPMDEIRKYGSFIIQPCNTFDYYASQLFLSSNATTNRLGILSIGSYSFKLGDDYWFNHEYLIPVIKIEHYASLLESTSTHWVFVPAS 1284
               SCOP domains d3azva1 A:858-1076 automated matches                                                                                                                                                                                       d3azva2 A:1077-1284 automated matches                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhheeeeeeee..eeee......eeeee...ee.......eeee.......eeeee.hhhhhhhhh..eeeeeeeeeee........eeeeeee....eeeeeee..eeeeeee.....eeeeeee.............eeeeeeee...eeeeee..eeeeeee...........eeeeeeee...---------..eeeeeeeeee....hhhhhhhhhhhh..................eeeeee.hhh.eeeeee..eeeeee............eeeeeee............eeeeeee....eeeeee..........eeeeeee..hhhhhhhhh.eeeeeee....eeeeeee.........eeeeeeeeee.........eeeeeeeeee....hhhhhhhh.eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3azv A  858 NEYFNSINDSKILSLQNKKNTLmDTSGYNAEVRVEGNVQLNPIFPFDFKLGSSGDDRGKVIVTQNENIVYNAmYESFSISFWIRINKWVSNLPGYTIIDSVKNNSGWSIGIISNFLVFTLKQNENSEQDINFSYDISKNAAGYNKWFFVTITTNmmGNmmIYINGKLIDTIKVKELTGINFSKTITFQmNKIPN---------NINmWIRDFYIFAKELDDKDINILFNSLQYTNVVKDYWGNDLRYDKEYYmINVNYmNRYmSKKGNGIVFNTRKNNNDFNEGYKIIIKRIRGNTNDTRVRGENVLYFNTTIDNKQYSLGmYKPSRNLGTDLVPLGALDQPmDEIRKYGSFIIQPCNTFDYYASQLFLSSNATTNRLGILSIGSYSFKLGDDYWFNHEYLIPVIKIEHYASLLESTSTHWVFVPAS 1284
                                   867       877  |    887       897       907       917       927  |    937       947       957       967       977       987       997      1007    ||1017      1027      1037      1047   |     -   |  1067      1077      1087      1097      1107  |   1117  |   1127      1137      1147      1157      1167      1177 |    1187      1197  |   1207      1217      1227      1237      1247      1257      1267      1277       
                                                880-MSE                                           930-MSE                                                                          1012-MSE|                         1046-MSE1      1061  |                                          1110-MSE |   |                                                       1179-MSE             1200-MSE                                                                                
                                                                                                                                                                                    1013-MSE                                           1064-MSE                                            1116-MSE                                                                                                                                                                    
                                                                                                                                                                                       1016-MSE                                                                                                1120-MSE                                                                                                                                                                
                                                                                                                                                                                        1017-MSE                                                                                                                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:418
 aligned with A5JGM8_CLOBO | A5JGM8 from UniProtKB/TrEMBL  Length:1285

    Alignment length:427
                                   867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      1157      1167      1177      1187      1197      1207      1217      1227      1237      1247      1257      1267      1277       
        A5JGM8_CLOBO    858 NEYFNSINDSKILSLQNKKNTLMDTSGYNAEVRVEGNVQLNPIFPFDFKLGSSGDDRGKVIVTQNENIVYNAMYESFSISFWIRINKWVSNLPGYTIIDSVKNNSGWSIGIISNFLVFTLKQNENSEQDINFSYDISKNAAGYNKWFFVTITTNMMGNMMIYINGKLIDTIKVKELTGINFSKTITFQMNKIPNTGLITSDSDNINMWIRDFYIFAKELDDKDINILFNSLQYTNVVKDYWGNDLRYDKEYYMINVNYMNRYMSKKGNGIVFNTRKNNNDFNEGYKIIIKRIRGNTNDTRVRGENVLYFNTTIDNKQYSLGMYKPSRNLGTDLVPLGALDQPMDEIRKYGSFIIQPCNTFDYYASQLFLSSNATTNRLGILSIGSYSFKLGDDYWFNHEYLIPVIKIEHYASLLESTSTHWVFVPAS 1284
               SCOP domains d3azvb1 B:858-1076 automated matches                                                                                                                                                                                       d3azvb2 B:1077-1284 automated matches                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhheeeeeeee..eeee......eeeee............eeee.......eeeee.hhhhhhhhhhh.eeeeeeeee.........eeeeeee....eeeeeee..eeeeeee.....eeeeeee.............eeeeeee.....eeeee..eeeeee............eeeeeeee...---------..eeeeeeeeee....hhhhhhhhhhhh..................eeeeee.hhh.eeeeee..eeeeee............eeeee..............eeeeeee....eeeeee..........eeeeeee..hhhhhhhhh.eeeeeee....eeeeeeeee..eeeeeeeeeeeeeee.........eeeeeeeee.....hhhhhhhh.eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3azv B  858 NEYFNSINDSKILSLQNKKNTLmDTSGYNAEVRVEGNVQLNPIFPFDFKLGSSGDDRGKVIVTQNENIVYNAmYESFSISFWIRINKWVSNLPGYTIIDSVKNNSGWSIGIISNFLVFTLKQNENSEQDINFSYDISKNAAGYNKWFFVTITTNmmGNmmIYINGKLIDTIKVKELTGINFSKTITFQmNKIPN---------NINmWIRDFYIFAKELDDKDINILFNSLQYTNVVKDYWGNDLRYDKEYYmINVNYmNRYmSKKGNGIVFNTRKNNNDFNEGYKIIIKRIRGNTNDTRVRGENVLYFNTTIDNKQYSLGmYKPSRNLGTDLVPLGALDQPmDEIRKYGSFIIQPCNTFDYYASQLFLSSNATTNRLGILSIGSYSFKLGDDYWFNHEYLIPVIKIEHYASLLESTSTHWVFVPAS 1284
                                   867       877  |    887       897       907       917       927  |    937       947       957       967       977       987       997      1007    ||1017      1027      1037      1047   |     -   |  1067      1077      1087      1097      1107  |   1117  |   1127      1137      1147      1157      1167      1177 |    1187      1197  |   1207      1217      1227      1237      1247      1257      1267      1277       
                                                880-MSE                                           930-MSE                                                                          1012-MSE|                         1046-MSE1      1061  |                                          1110-MSE |   |                                                       1179-MSE             1200-MSE                                                                                
                                                                                                                                                                                    1013-MSE                                           1064-MSE                                            1116-MSE                                                                                                                                                                    
                                                                                                                                                                                       1016-MSE                                                                                                1120-MSE                                                                                                                                                                
                                                                                                                                                                                        1017-MSE                                                                                                                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:418
 aligned with Q9LBR1_CLOBO | Q9LBR1 from UniProtKB/TrEMBL  Length:1285

    Alignment length:427
                                   867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      1157      1167      1177      1187      1197      1207      1217      1227      1237      1247      1257      1267      1277       
        Q9LBR1_CLOBO    858 NEYFNSINDSKILSLQNKKNTLMDTSGYNAEVRVEGNVQLNPIFPFDFKLGSSGDDRGKVIVTQNENIVYNAMYESFSISFWIRINKWVSNLPGYTIIDSVKNNSGWSIGIISNFLVFTLKQNENSEQDINFSYDISKNAAGYNKWFFVTITTNMMGNMMIYINGKLIDTIKVKELTGINFSKTITFQMNKIPNTGLITSDSDNINMWIRDFYIFAKELDDKDINILFNSLQYTNVVKDYWGNDLRYDKEYYMINVNYMNRYMSKKGNGIVFNTRKNNNDFNEGYKIIIKRIRGNTNDTRVRGENVLYFNTTIDNKQYSLGMYKPSRNLGTDLVPLGALDQPMDEIRKYGSFIIQPCNTFDYYASQLFLSSNATTNRLGILSIGSYSFKLGDDYWFNHEYLIPVIKIEHYASLLESTSTHWVFVPAS 1284
               SCOP domains d3azvb1 B:858-1076 automated matches                                                                                                                                                                                       d3azvb2 B:1077-1284 automated matches                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhheeeeeeee..eeee......eeeee............eeee.......eeeee.hhhhhhhhhhh.eeeeeeeee.........eeeeeee....eeeeeee..eeeeeee.....eeeeeee.............eeeeeee.....eeeee..eeeeee............eeeeeeee...---------..eeeeeeeeee....hhhhhhhhhhhh..................eeeeee.hhh.eeeeee..eeeeee............eeeee..............eeeeeee....eeeeee..........eeeeeee..hhhhhhhhh.eeeeeee....eeeeeeeee..eeeeeeeeeeeeeee.........eeeeeeeee.....hhhhhhhh.eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3azv B  858 NEYFNSINDSKILSLQNKKNTLmDTSGYNAEVRVEGNVQLNPIFPFDFKLGSSGDDRGKVIVTQNENIVYNAmYESFSISFWIRINKWVSNLPGYTIIDSVKNNSGWSIGIISNFLVFTLKQNENSEQDINFSYDISKNAAGYNKWFFVTITTNmmGNmmIYINGKLIDTIKVKELTGINFSKTITFQmNKIPN---------NINmWIRDFYIFAKELDDKDINILFNSLQYTNVVKDYWGNDLRYDKEYYmINVNYmNRYmSKKGNGIVFNTRKNNNDFNEGYKIIIKRIRGNTNDTRVRGENVLYFNTTIDNKQYSLGmYKPSRNLGTDLVPLGALDQPmDEIRKYGSFIIQPCNTFDYYASQLFLSSNATTNRLGILSIGSYSFKLGDDYWFNHEYLIPVIKIEHYASLLESTSTHWVFVPAS 1284
                                   867       877  |    887       897       907       917       927  |    937       947       957       967       977       987       997      1007    ||1017      1027      1037      1047   |     -   |  1067      1077      1087      1097      1107  |   1117  |   1127      1137      1147      1157      1167      1177 |    1187      1197  |   1207      1217      1227      1237      1247      1257      1267      1277       
                                                880-MSE                                           930-MSE                                                                          1012-MSE|                         1046-MSE1      1061  |                                          1110-MSE |   |                                                       1179-MSE             1200-MSE                                                                                
                                                                                                                                                                                    1013-MSE                                           1064-MSE                                            1116-MSE                                                                                                                                                                    
                                                                                                                                                                                       1016-MSE                                                                                                1120-MSE                                                                                                                                                                
                                                                                                                                                                                        1017-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3AZV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3AZV)

(-) Gene Ontology  (7, 13)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (A5JGM8_CLOBO | A5JGM8)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0004222    metalloendopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0051609    inhibition of neurotransmitter uptake    Any process that prevents the activation of the directed movement of a neurotransmitter into a cell.
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Chain A,B   (Q9LBR1_CLOBO | Q9LBR1)
molecular function
    GO:0004222    metalloendopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0051609    inhibition of neurotransmitter uptake    Any process that prevents the activation of the directed movement of a neurotransmitter into a cell.
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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  3azv
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
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    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
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  Q9LBR1_CLOBO | Q9LBR1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        A5JGM8_CLOBO | A5JGM8: 3azw
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        Q9LBR1_CLOBO | Q9LBR1: 3azw 3n7l 3n7m 4fvv 4isq 4isr

(-) Related Entries Specified in the PDB File

3azw
3n7l IDENTICAL PROTEIN