3ARN - JenaLib

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ALA A:98 , GLY A:99 , VAL A:100 , TYR A:105 , VAL A:109 , GLY A:110 , VAL A:112 , HOH A:171 , HOH A:230 , HOH A:259 , SER C:86 , GLY C:87 , ALA C:90 , LYS C:91	BINDING SITE FOR RESIDUE MSJ A 165
2	AC2	SOFTWARE	ASP A:95 , HOH A:250 , HOH A:251 , ASP B:95 , HOH B:252 , HOH B:255 , ASP C:95 , HOH C:253	BINDING SITE FOR RESIDUE MG A 166
3	AC3	SOFTWARE	HIS A:92	BINDING SITE FOR RESIDUE MG A 167
4	AC4	SOFTWARE	GLU A:135 , GLU B:135 , HOH B:413 , GLU C:135	BINDING SITE FOR RESIDUE MG A 168
5	AC5	SOFTWARE	SER A:86 , GLY A:87 , ALA A:90 , LYS A:91 , ALA B:98 , GLY B:99 , VAL B:100 , TYR B:105 , VAL B:109 , GLY B:110 , VAL B:112 , HOH B:186 , HOH B:193 , HOH B:197	BINDING SITE FOR RESIDUE MSJ B 165
6	AC6	SOFTWARE	HIS A:34 , HOH A:401 , HIS B:34 , HIS C:34	BINDING SITE FOR RESIDUE MG B 166
7	AC7	SOFTWARE	HIS B:92	BINDING SITE FOR RESIDUE MG B 167
8	AC8	SOFTWARE	SER B:86 , GLY B:87 , ALA B:90 , LYS B:91 , VAL C:65 , ALA C:98 , GLY C:99 , VAL C:100 , TYR C:105 , VAL C:109 , GLY C:110 , VAL C:112 , HOH C:171 , HOH C:183 , HOH C:340	BINDING SITE FOR RESIDUE MSJ C 165
9	AC9	SOFTWARE	HIS C:92	BINDING SITE FOR RESIDUE MG C 166

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (6, 18)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:125
 aligned with DUT_HUMAN | P33316 from UniProtKB/Swiss-Prot  Length:252

    Alignment length:125
                                   121       131       141       151       161       171       181       191       201       211       221       231     
            DUT_HUMAN   112 MQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQAL 236
               SCOP domains d3arna_ A: automated matches                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee................eeeee....eee...eeeeee..eeee....eeeeee.hhhhhhhhheeee..ee........eeeeee.....eee....eeeeeeeeeee...eee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2b  PDB: A:24-52      ------------------------------Exon 1.4        ------------------------Exon 1.6  PDB: A:123-1461. Transcript 1 (1)
           Transcript 1 (2) ----------------------------Exon 1.3  PDB: A:52-83          --------------Exon 1.5  PDB: A:98-123   ------------------------- Transcript 1 (2)
                 3arn A  24 MQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQAL 148
                                    33        43        53        63        73        83        93       103       113       123       133       143

Chain B from PDB  Type:PROTEIN  Length:125
 aligned with DUT_HUMAN | P33316 from UniProtKB/Swiss-Prot  Length:252

    Alignment length:125
                                   121       131       141       151       161       171       181       191       201       211       221       231     
            DUT_HUMAN   112 MQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQAL 236
               SCOP domains d3arnb_ B: automated matches                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee................eeeee....eee...eeeeee..eeee....eeeeee.hhhhhhhhheeee..ee........eeeeee.....eee....eeeeeeeee.....eee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2b  PDB: B:24-52      ------------------------------Exon 1.4        ------------------------Exon 1.6  PDB: B:123-1461. Transcript 1 (1)
           Transcript 1 (2) ----------------------------Exon 1.3  PDB: B:52-83          --------------Exon 1.5  PDB: B:98-123   ------------------------- Transcript 1 (2)
                 3arn B  24 MQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQAL 148
                                    33        43        53        63        73        83        93       103       113       123       133       143

Chain C from PDB  Type:PROTEIN  Length:125
 aligned with DUT_HUMAN | P33316 from UniProtKB/Swiss-Prot  Length:252

    Alignment length:125
                                   121       131       141       151       161       171       181       191       201       211       221       231     
            DUT_HUMAN   112 MQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQAL 236
               SCOP domains d3arnc_ C: automated matches                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee................eeeee....eee...eeeeee..eeee....eeeeee.hhhhhhhhheeee..ee........eeeeee.....eee....eeeeeeeee.....eee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2b  PDB: C:24-52      ------------------------------Exon 1.4        ------------------------Exon 1.6  PDB: C:123-1461. Transcript 1 (1)
           Transcript 1 (2) ----------------------------Exon 1.3  PDB: C:52-83          --------------Exon 1.5  PDB: C:98-123   ------------------------- Transcript 1 (2)
                 3arn C  24 MQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEVQAL 148
                                    33        43        53        63        73        83        93       103       113       123       133       143

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 3)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C (DUT_HUMAN | P33316)

molecular function
	GO:0004170	dUTP diphosphatase activity	Catalysis of the reaction: dUTP + H2O = dUMP + diphosphate.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0006260	DNA replication	The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
	GO:0006226	dUMP biosynthetic process	The chemical reactions and pathways resulting in the formation of dUMP, deoxyuridine monophosphate (2'-deoxyuridine 5'-phosphate).
	GO:0046081	dUTP catabolic process	The chemical reactions and pathways resulting in the breakdown of dUTP, deoxyuridine (5'-)triphosphate.
	GO:0046080	dUTP metabolic process	The chemical reactions and pathways involving dUTP, deoxyuridine (5'-)triphosphate.
	GO:0006139	nucleobase-containing compound metabolic process	Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
	GO:0009117	nucleotide metabolic process	The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates).
	GO:0046134	pyrimidine nucleoside biosynthetic process	The chemical reactions and pathways resulting in the formation of one of a family of organic molecules consisting of a pyrimidine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside).
cellular component
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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	3arn
		Family and Domain Information	:	ProDom \| SYSTERS
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	DUT_HUMAN \| P33316
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	3.6.1.23
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 9)

Sites (9, 9)