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(-) Description

Title :  HIGH RESOLUTION STRUCTURE OF PENICILLIUM CHRYSOGENUM ALPHA-L-ARABINANASE
 
Authors :  Y. Sogabe
Date :  11 Sep 09  (Deposition) - 15 Sep 10  (Release) - 25 May 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.14
Chains :  Asym./Biol. Unit :  A
Keywords :  Arabinase, Glycosyl Hydrolase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Sogabe, T. Kitatani, A. Yamaguchi, T. Kinoshita, H. Adachi, K. Takano, T. Inoue, Y. Mori, H. Matsumura, T. Sakamoto, T. Tada
High-Resolution Structure Of Exo-Arabinanase From Penicillium Chrysogenum
Acta Crystallogr. , Sect. D V. 67 415 2011
PubMed-ID: 21543843  |  Reference-DOI: 10.1107/S0907444911006299

(-) Compounds

Molecule 1 - EXO-ARABINANASE
    Chains: A
    EC Number: 3.2.1.55
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3A
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 24-378
    Organism Common: PENICILLIUM NOTATUM
    Organism Scientific: PENICILLIUM CHRYSOGENUM
    Organism Taxid: 5076
    Strain: 31B
    Synonym: EXO-1,5-ALPHA-L-ARABINANASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MPD3Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:48 , GLU A:64 , TYR A:66 , TYR A:104 , GLN A:105 , MPD A:402 , HOH A:1060BINDING SITE FOR RESIDUE ACT A 401
2AC2SOFTWAREPRO A:165 , TYR A:337 , ACT A:401 , HOH A:1131 , HOH A:1248 , HOH A:1466BINDING SITE FOR RESIDUE MPD A 402
3AC3SOFTWAREILE A:42 , SER A:273 , PRO A:275 , HOH A:1150 , HOH A:1181 , HOH A:1331 , HOH A:1406BINDING SITE FOR RESIDUE MPD A 403
4AC4SOFTWAREASN A:88 , ASP A:190 , ARG A:192 , VAL A:215 , GLU A:217 , HOH A:1107 , HOH A:1530BINDING SITE FOR RESIDUE MPD A 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3A71)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Val A:43 -Pro A:44
2Glu A:69 -Pro A:70
3Pro A:70 -Pro A:71

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3A71)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3A71)

(-) Exons   (0, 0)

(no "Exon" information available for 3A71)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:353
 aligned with Q7ZA77_PENCH | Q7ZA77 from UniProtKB/TrEMBL  Length:378

    Alignment length:353
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375   
         Q7ZA77_PENCH    26 PTSLTNVTIFSPPSDYIVPRTLYPRNEQLPNGDLLATWENYSPEPPAVYFPIYRSKDHGKTWNEISRVHDTVNGYGLRYQPFLYSLPERVGSFKKGTLLLAGSSIPTDLSSTDIVLYASQDDGMTWDFVSHIAAGGEARPNNGLTPVWEPFLLANKGKLICYYSDQRDNATYGQTMVHQVTNDLKNWGPVVEDVTYPTYTDRPGMPVVTKLPNGQYFYVYEYGSFFGTETYSFPLYYRLSSDPENIASAPGQRLVVSSGTQPTSSPYAVWTPYGGENGTIIVSSGTQGTLFINKALGEGEWTEIPCPEEHGYTRALRVLSEDGGRYLVVNSAGVLLGENNRVSVSVMDLKEVL 378
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..........eeeeeeee.....eeeeeee.........eeeeee.......eeeeee........eeeeeeeee............eeeeeee.......eeeeeeee.......eeeeeeeee...........eeeeeeeee..eeeeeeee.........eeeeeee.........eeee.......eeeeeeeee.....eeeeeeee...........eeeeee...........ee.............eeeee.......eeeee......eeee........eee..........eeee.hhhhhheeeeee..........eeeeeeehhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a71 A  26 PTSLTNVTIFSPPSDYIVPRTLYPRNEQLPNGDLLATWENYSPEPPAVYFPIYRSKDHGKTWNEISRVHDTVNGYGLRYQPFLYSLPERVGSFKKGTLLLAGSSIPTDLSSTDIVLYASQDDGMTWDFVSHIAAGGEARPNNGLTPVWEPFLLANKGKLICYYSDQRDNATYGQTMVHQVTNDLKNWGPVVEDVTYPTYTDRPGMPVVTKLPNGQYFYVYEYGSFFGTETYSFPLYYRLSSDPENIASAPGQRLVVSSGTQPTSSPYAVWTPYGGENGTIIVSSGTQGTLFINKALGEGEWTEIPCPEEHGYTRALRVLSEDGGRYLVVNSAGVLLGENNRVSVSVMDLKEVL 378
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3A71)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3A71)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3A71)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3A71)

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  Cis Peptide Bonds
    Glu A:69 - Pro A:70   [ RasMol ]  
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    Val A:43 - Pro A:44   [ RasMol ]  
 

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  3a71
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  Q7ZA77_PENCH | Q7ZA77
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q7ZA77_PENCH | Q7ZA77: 3a72

(-) Related Entries Specified in the PDB File

3a72