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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Biological Unit 7 (Jmol Viewer)

Biological Unit 8 (Jmol Viewer)

Biological Unit 9 (Jmol Viewer)

Biological Unit 10 (Jmol Viewer)

Biological Unit 11 (Jmol Viewer)

Biological Unit 12 (Jmol Viewer)

Biological Unit 13 (Jmol Viewer)

Biological Unit 14 (Jmol Viewer)

Biological Unit 15 (Jmol Viewer)

Biological Unit 16 (Jmol Viewer)

Biological Unit 17 (Jmol Viewer)

Biological Unit 18 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF WILD TYPE NITROSOMONAS EUROPAEA CYTOCHROME C552

Authors :   H. -P. Hersleth, M. Can, J. Krucinska, G. Zoppellaro, N. H. Andersen, S. J. E. Wedekind, K. K. Andersson, K. L. Bren

Date :   25 Feb 13 (Deposition) - 14 Aug 13 (Release) - 16 Oct 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.35

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)
Biol. Unit 7: G  (1x)
Biol. Unit 8: H  (1x)
Biol. Unit 9: I  (1x)
Biol. Unit 10: J  (1x)
Biol. Unit 11: K  (1x)
Biol. Unit 12: L  (1x)
Biol. Unit 13: M  (1x)
Biol. Unit 14: N  (1x)
Biol. Unit 15: O  (1x)
Biol. Unit 16: P  (1x)
Biol. Unit 17: Q  (1x)
Biol. Unit 18: R  (1x)

Keywords :   Hemeprotein, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Can, J. Krucinska, G. Zoppellaro, N. H. Andersen, J. E. Wedekind, H. -P. Hersleth, K. K. Andersson, K. L. Bren
Structural Characterization Of Nitrosomonas Europaea Cytochrome C-552 Variants With Marked Differences In Electronic Structure.
Chembiochem V. 14 1828 2013
PubMed-ID: 23908017 | Reference-DOI: 10.1002/CBIC.201300118

Molecule 1 - CYTOCHROME C-552
	Chains	:	A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
	EC Number	:	1.7.2.2
	Organism Scientific	:	NITROSOMONAS EUROPAEA
	Organism Taxid	:	915
	Synonym	:	CYTOCHROME C-551, CYTOCHROME C552

		1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J	K	L	M	N	O	P	Q	R
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F
Biological Unit 7 (1x)	:							G
Biological Unit 8 (1x)	:								H
Biological Unit 9 (1x)	:									I
Biological Unit 10 (1x)	:										J
Biological Unit 11 (1x)	:											K
Biological Unit 12 (1x)	:												L
Biological Unit 13 (1x)	:													M
Biological Unit 14 (1x)	:														N
Biological Unit 15 (1x)	:															O
Biological Unit 16 (1x)	:																P
Biological Unit 17 (1x)	:																	Q
Biological Unit 18 (1x)	:																		R

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 18)

No.	Name	Count	Type	Full Name
1	HEC	18	Ligand/Ion	HEME C

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	HEC	1	Ligand/Ion	HEME C

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	HEC	1	Ligand/Ion	HEME C

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	HEC	1	Ligand/Ion	HEME C

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	HEC	1	Ligand/Ion	HEME C

Biological Unit 5 (1, 1)

No.	Name	Count	Type	Full Name
1	HEC	1	Ligand/Ion	HEME C

Biological Unit 6 (1, 1)

No.	Name	Count	Type	Full Name
1	HEC	1	Ligand/Ion	HEME C

Biological Unit 7 (1, 1)

No.	Name	Count	Type	Full Name
1	HEC	1	Ligand/Ion	HEME C

Biological Unit 8 (1, 1)

No.	Name	Count	Type	Full Name
1	HEC	1	Ligand/Ion	HEME C

Biological Unit 9 (1, 1)

No.	Name	Count	Type	Full Name
1	HEC	1	Ligand/Ion	HEME C

Biological Unit 10 (1, 1)

No.	Name	Count	Type	Full Name
1	HEC	1	Ligand/Ion	HEME C

Biological Unit 11 (1, 1)

No.	Name	Count	Type	Full Name
1	HEC	1	Ligand/Ion	HEME C

Biological Unit 12 (1, 1)

No.	Name	Count	Type	Full Name
1	HEC	1	Ligand/Ion	HEME C

Biological Unit 13 (1, 1)

No.	Name	Count	Type	Full Name
1	HEC	1	Ligand/Ion	HEME C

Biological Unit 14 (1, 1)

No.	Name	Count	Type	Full Name
1	HEC	1	Ligand/Ion	HEME C

Biological Unit 15 (1, 1)

No.	Name	Count	Type	Full Name
1	HEC	1	Ligand/Ion	HEME C

Biological Unit 16 (1, 1)

No.	Name	Count	Type	Full Name
1	HEC	1	Ligand/Ion	HEME C

Biological Unit 17 (1, 1)

No.	Name	Count	Type	Full Name
1	HEC	1	Ligand/Ion	HEME C

Biological Unit 18 (1, 1)

No.	Name	Count	Type	Full Name
1	HEC	1	Ligand/Ion	HEME C

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:8 , ASN A:9 , CYS A:10 , CYS A:13 , HIS A:14 , VAL A:21 , GLY A:22 , PRO A:23 , TYR A:32 , TYR A:41 , LYS A:45 , ILE A:46 , SER A:50 , SER A:51 , GLY A:52 , VAL A:53 , TRP A:54 , GLY A:55 , ILE A:57 , MET A:59 , ASN A:62 , HOH A:2018	BINDING SITE FOR RESIDUE HEC A1082
02	AC2	SOFTWARE	CYS B:10 , CYS B:13 , HIS B:14 , VAL B:21 , GLY B:22 , PRO B:23 , ILE B:28 , TYR B:32 , TYR B:41 , LYS B:45 , ILE B:46 , SER B:50 , SER B:51 , GLY B:52 , VAL B:53 , TRP B:54 , GLY B:55 , ILE B:57 , MET B:59 , ASN B:62 , HOH B:2017	BINDING SITE FOR RESIDUE HEC B1082
03	AC3	SOFTWARE	ASN C:9 , CYS C:10 , CYS C:13 , HIS C:14 , GLY C:22 , ILE C:28 , TYR C:32 , TYR C:41 , LYS C:45 , ILE C:46 , SER C:50 , SER C:51 , GLY C:52 , VAL C:53 , TRP C:54 , GLY C:55 , ILE C:57 , PRO C:58 , MET C:59 , ASN C:62 , HOH C:2008	BINDING SITE FOR RESIDUE HEC C1082
04	AC4	SOFTWARE	ALA C:12 , ASN D:8 , ASN D:9 , CYS D:10 , CYS D:13 , HIS D:14 , GLY D:22 , PRO D:23 , ILE D:28 , TYR D:32 , TYR D:41 , LYS D:45 , ILE D:46 , SER D:50 , SER D:51 , GLY D:52 , VAL D:53 , TRP D:54 , GLY D:55 , ILE D:57 , MET D:59 , ASN D:62 , HOH D:2020	BINDING SITE FOR RESIDUE HEC D1082
05	AC5	SOFTWARE	ASN E:8 , ASN E:9 , CYS E:10 , CYS E:13 , HIS E:14 , GLY E:22 , PRO E:23 , TYR E:32 , TYR E:41 , LYS E:45 , ILE E:46 , SER E:50 , SER E:51 , GLY E:52 , VAL E:53 , TRP E:54 , GLY E:55 , ILE E:57 , MET E:59 , HOH E:2002	BINDING SITE FOR RESIDUE HEC E1082
06	AC6	SOFTWARE	ASN F:8 , ASN F:9 , CYS F:10 , CYS F:13 , HIS F:14 , GLY F:22 , PRO F:23 , TYR F:32 , TYR F:41 , LEU F:42 , LYS F:45 , ILE F:46 , SER F:50 , SER F:51 , GLY F:52 , VAL F:53 , TRP F:54 , GLY F:55 , ILE F:57 , MET F:59 , ASN F:62 , HOH F:2002	BINDING SITE FOR RESIDUE HEC F1082
07	AC7	SOFTWARE	ASN G:9 , CYS G:10 , CYS G:13 , HIS G:14 , GLY G:22 , PRO G:23 , ILE G:28 , TYR G:32 , TYR G:41 , LYS G:45 , ILE G:46 , SER G:50 , SER G:51 , GLY G:52 , VAL G:53 , TRP G:54 , GLY G:55 , MET G:59 , ASN G:62 , HOH G:2008	BINDING SITE FOR RESIDUE HEC G1082
08	AC8	SOFTWARE	CYS H:10 , CYS H:13 , HIS H:14 , GLY H:22 , PRO H:23 , ILE H:28 , TYR H:32 , TYR H:41 , LYS H:45 , ILE H:46 , SER H:50 , SER H:51 , GLY H:52 , VAL H:53 , TRP H:54 , GLY H:55 , ILE H:57 , PRO H:58 , MET H:59 , ASN H:62 , HOH H:2009	BINDING SITE FOR RESIDUE HEC H1082
09	AC9	SOFTWARE	CYS I:10 , CYS I:13 , HIS I:14 , GLY I:22 , PRO I:23 , TYR I:32 , TYR I:41 , LEU I:42 , LYS I:45 , ILE I:46 , SER I:50 , SER I:51 , GLY I:52 , VAL I:53 , TRP I:54 , GLY I:55 , ILE I:57 , PRO I:58 , MET I:59	BINDING SITE FOR RESIDUE HEC I1082
10	BC1	SOFTWARE	ALA F:12 , ASN J:8 , ASN J:9 , CYS J:10 , CYS J:13 , HIS J:14 , GLY J:22 , PRO J:23 , ILE J:28 , TYR J:32 , TYR J:41 , LYS J:45 , ILE J:46 , SER J:50 , SER J:51 , GLY J:52 , VAL J:53 , TRP J:54 , GLY J:55 , ILE J:57 , MET J:59 , ASN J:62	BINDING SITE FOR RESIDUE HEC J1082
11	BC2	SOFTWARE	ALA B:12 , ASN K:8 , ASN K:9 , CYS K:10 , CYS K:13 , HIS K:14 , GLY K:22 , PRO K:23 , ILE K:28 , TYR K:32 , TYR K:41 , LYS K:45 , ILE K:46 , SER K:50 , SER K:51 , GLY K:52 , VAL K:53 , TRP K:54 , GLY K:55 , ILE K:57 , PRO K:58 , MET K:59 , ASN K:62 , HOH K:2014	BINDING SITE FOR RESIDUE HEC K1082
12	BC3	SOFTWARE	ASN L:8 , CYS L:10 , CYS L:13 , HIS L:14 , GLY L:22 , PRO L:23 , ILE L:28 , TYR L:32 , TYR L:41 , LYS L:45 , ILE L:46 , SER L:50 , SER L:51 , GLY L:52 , VAL L:53 , TRP L:54 , GLY L:55 , ILE L:57 , MET L:59 , PRO L:60 , ASN L:62 , HOH L:2013	BINDING SITE FOR RESIDUE HEC L1082
13	BC4	SOFTWARE	CYS M:10 , CYS M:13 , HIS M:14 , GLY M:22 , PRO M:23 , TYR M:32 , LYS M:45 , SER M:50 , SER M:51 , GLY M:52 , VAL M:53 , TRP M:54 , GLY M:55 , ILE M:57 , MET M:59 , PRO M:60 , ASN M:62 , GLY O:48 , GLY O:49	BINDING SITE FOR RESIDUE HEC M1082
14	BC5	SOFTWARE	ASN N:9 , CYS N:10 , CYS N:13 , HIS N:14 , GLY N:22 , PRO N:23 , TYR N:32 , TYR N:41 , LYS N:45 , ILE N:46 , SER N:50 , SER N:51 , GLY N:52 , VAL N:53 , TRP N:54 , GLY N:55 , ILE N:57 , MET N:59 , ASN N:62 , LEU N:73	BINDING SITE FOR RESIDUE HEC N1082
15	BC6	SOFTWARE	GLY D:48 , CYS O:10 , CYS O:13 , HIS O:14 , VAL O:21 , GLY O:22 , PRO O:23 , ILE O:28 , TYR O:32 , TYR O:41 , LYS O:45 , ILE O:46 , SER O:50 , SER O:51 , GLY O:52 , VAL O:53 , TRP O:54 , GLY O:55 , ILE O:57 , PRO O:58 , MET O:59 , PRO O:60 , HOH O:2003	BINDING SITE FOR RESIDUE HEC O1082
16	BC7	SOFTWARE	CYS P:10 , CYS P:13 , HIS P:14 , GLY P:22 , PRO P:23 , ILE P:28 , TYR P:32 , TYR P:41 , LEU P:42 , LYS P:45 , ILE P:46 , SER P:50 , SER P:51 , GLY P:52 , VAL P:53 , TRP P:54 , GLY P:55 , ILE P:57 , MET P:59	BINDING SITE FOR RESIDUE HEC P1082
17	BC8	SOFTWARE	ASN Q:8 , CYS Q:10 , CYS Q:13 , HIS Q:14 , VAL Q:21 , GLY Q:22 , PRO Q:23 , ILE Q:28 , TYR Q:32 , TYR Q:41 , LEU Q:42 , LYS Q:45 , ILE Q:46 , SER Q:50 , SER Q:51 , GLY Q:52 , VAL Q:53 , TRP Q:54 , GLY Q:55 , ILE Q:57 , MET Q:59 , ASN Q:62 , HOH Q:2004 , GLY R:48 , GLY R:49	BINDING SITE FOR RESIDUE HEC Q1082
18	BC9	SOFTWARE	GLY J:48 , CYS R:10 , CYS R:13 , HIS R:14 , GLY R:22 , PRO R:23 , ILE R:28 , TYR R:32 , TYR R:41 , LYS R:45 , ILE R:46 , SER R:50 , SER R:51 , GLY R:52 , VAL R:53 , TRP R:54 , GLY R:55 , ILE R:57 , MET R:59 , ASN R:62	BINDING SITE FOR RESIDUE HEC R1082

(no "SS Bond" information available for 3ZOW)

Asymmetric Unit

No.	Residues
1	Ala M:33	-	Asp M:34
2	Asp P:36	-	Asp P:37
3	Val R:65	-	Ser R:66

(no "SAP(SNP)/Variant" information available for 3ZOW)

(no "PROSITE Motif" information available for 3ZOW)

(no "Exon" information available for 3ZOW)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:81
 aligned with CY552_NITEU | P95339 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:81
                                    32        42        52        62        72        82        92       102 
          CY552_NITEU    23 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK 103
               SCOP domains d3zowa_ A: Cytochrome c552                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.........hhhhhhhhhh...hhhhhhhhhhhhh................hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 3zow A   1 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK  81
                                    10        20        30        40        50        60        70        80

Chain B from PDB  Type:PROTEIN  Length:81
 aligned with CY552_NITEU | P95339 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:81
                                    32        42        52        62        72        82        92       102 
          CY552_NITEU    23 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK 103
               SCOP domains d3zowb_ B: Cytochrome c552                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..........hhhhhhhhhh...hhhhhhhhhhhhh................hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 3zow B   1 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK  81
                                    10        20        30        40        50        60        70        80

Chain C from PDB  Type:PROTEIN  Length:81
 aligned with CY552_NITEU | P95339 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:81
                                    32        42        52        62        72        82        92       102 
          CY552_NITEU    23 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK 103
               SCOP domains d3zowc_ C: Cytochrome c552                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh...............hhhhhhhhh....hhhhhhhhhhhhh................hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 3zow C   1 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK  81
                                    10        20        30        40        50        60        70        80

Chain D from PDB  Type:PROTEIN  Length:81
 aligned with CY552_NITEU | P95339 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:81
                                    32        42        52        62        72        82        92       102 
          CY552_NITEU    23 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK 103
               SCOP domains d3zowd_ D: Cytochrome c552                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh...............hhhhhhhhh....hhhhhhhhhhhhh................hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 3zow D   1 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK  81
                                    10        20        30        40        50        60        70        80

Chain E from PDB  Type:PROTEIN  Length:81
 aligned with CY552_NITEU | P95339 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:81
                                    32        42        52        62        72        82        92       102 
          CY552_NITEU    23 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK 103
               SCOP domains d3zowe_ E: Cytochrome c552                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.........hhhhhhhhhh...hhhhhhhhhhhhh................hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 3zow E   1 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK  81
                                    10        20        30        40        50        60        70        80

Chain F from PDB  Type:PROTEIN  Length:81
 aligned with CY552_NITEU | P95339 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:81
                                    32        42        52        62        72        82        92       102 
          CY552_NITEU    23 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK 103
               SCOP domains d3zowf_ F: Cytochrome c552                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..........hhhhhhhhhh...hhhhhhhhhhhhh................hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 3zow F   1 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK  81
                                    10        20        30        40        50        60        70        80

Chain G from PDB  Type:PROTEIN  Length:81
 aligned with CY552_NITEU | P95339 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:81
                                    32        42        52        62        72        82        92       102 
          CY552_NITEU    23 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK 103
               SCOP domains d3zowg_ G: Cytochrome c552                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..........hhhhhhhhhh...hhhhhhhhhhhhh................hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 3zow G   1 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK  81
                                    10        20        30        40        50        60        70        80

Chain H from PDB  Type:PROTEIN  Length:81
 aligned with CY552_NITEU | P95339 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:81
                                    32        42        52        62        72        82        92       102 
          CY552_NITEU    23 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK 103
               SCOP domains d3zowh_ H: Cytochrome c552                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..........hhhhhhhhhh...hhhhhhhhhhhhh................hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 3zow H   1 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK  81
                                    10        20        30        40        50        60        70        80

Chain I from PDB  Type:PROTEIN  Length:81
 aligned with CY552_NITEU | P95339 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:81
                                    32        42        52        62        72        82        92       102 
          CY552_NITEU    23 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK 103
               SCOP domains d3zowi_ I: Cytochrome c552                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..........hhhhhhhhh....hhhhhhhhhhhhh................hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 3zow I   1 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK  81
                                    10        20        30        40        50        60        70        80

Chain J from PDB  Type:PROTEIN  Length:81
 aligned with CY552_NITEU | P95339 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:81
                                    32        42        52        62        72        82        92       102 
          CY552_NITEU    23 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK 103
               SCOP domains d3zowj_ J: Cytochrome c552                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh...............hhhhhhhhhh...hhhhhhhhhhhhh................hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 3zow J   1 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK  81
                                    10        20        30        40        50        60        70        80

Chain K from PDB  Type:PROTEIN  Length:81
 aligned with CY552_NITEU | P95339 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:81
                                    32        42        52        62        72        82        92       102 
          CY552_NITEU    23 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK 103
               SCOP domains d3zowk_ K: Cytochrome c552                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh...............hhhhhhhhhh...hhhhhhhhhhhhh................hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 3zow K   1 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK  81
                                    10        20        30        40        50        60        70        80

Chain L from PDB  Type:PROTEIN  Length:81
 aligned with CY552_NITEU | P95339 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:81
                                    32        42        52        62        72        82        92       102 
          CY552_NITEU    23 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK 103
               SCOP domains d3zowl_ L: Cytochrome c552                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh...............hhhhhhhhhh...hhhhhhhhhhhhh................hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 3zow L   1 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK  81
                                    10        20        30        40        50        60        70        80

Chain M from PDB  Type:PROTEIN  Length:81
 aligned with CY552_NITEU | P95339 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:81
                                    32        42        52        62        72        82        92       102 
          CY552_NITEU    23 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK 103
               SCOP domains d3zowm_ M: Cytochrome c552                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..........hhhhhhhhhh...hhhhhhhhhhhhh................hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 3zow M   1 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK  81
                                    10        20        30        40        50        60        70        80

Chain N from PDB  Type:PROTEIN  Length:81
 aligned with CY552_NITEU | P95339 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:81
                                    32        42        52        62        72        82        92       102 
          CY552_NITEU    23 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK 103
               SCOP domains d3zown_ N: Cytochrome c552                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh...............hhhhhhhhh....hhhhhhhhhhhhh................hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 3zow N   1 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK  81
                                    10        20        30        40        50        60        70        80

Chain O from PDB  Type:PROTEIN  Length:81
 aligned with CY552_NITEU | P95339 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:81
                                    32        42        52        62        72        82        92       102 
          CY552_NITEU    23 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK 103
               SCOP domains d3zowo_ O: Cytochrome c552                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh...............hhhhhhhhhh...hhhhhhhhhhhhh................hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 3zow O   1 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK  81
                                    10        20        30        40        50        60        70        80

Chain P from PDB  Type:PROTEIN  Length:72
 aligned with CY552_NITEU | P95339 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:72
                                    41        51        61        71        81        91       101  
          CY552_NITEU    32 CIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK 103
               SCOP domains d3zowp_ P: Cytochrome c552                                               SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..............hhhhhhhhh....hhhhhhhhhhhhh................hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 3zow P  10 CIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK  81
                                    19        29        39        49        59        69        79

Chain Q from PDB  Type:PROTEIN  Length:81
 aligned with CY552_NITEU | P95339 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:81
                                    32        42        52        62        72        82        92       102 
          CY552_NITEU    23 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK 103
               SCOP domains d3zowq_ Q: Cytochrome c552                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..........hhhhhhhhh....hhhhhhhhhhhhh................hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 3zow Q   1 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK  81
                                    10        20        30        40        50        60        70        80

Chain R from PDB  Type:PROTEIN  Length:81
 aligned with CY552_NITEU | P95339 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:81
                                    32        42        52        62        72        82        92       102 
          CY552_NITEU    23 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK 103
               SCOP domains d3zowr_ R: Cytochrome c552                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh..........hhhhhhhhh....hhhhhhhhhhhhh.................hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 3zow R   1 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK  81
                                    10        20        30        40        50        60        70        80

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Cytochrome c (308)

Superfamily: Cytochrome c (308)

Family: monodomain cytochrome c (197)

Protein domain: Cytochrome c552 (21)

Nitrosomonas europaea [TaxId: 915] (3)

1a	d3zowa_	A:
1b	d3zowb_	B:
1c	d3zowk_	K:
1d	d3zowl_	L:
1e	d3zowm_	M:
1f	d3zown_	N:
1g	d3zowo_	O:
1h	d3zowp_	P:
1i	d3zowq_	Q:
1j	d3zowr_	R:
1k	d3zowc_	C:
1l	d3zowd_	D:
1m	d3zowe_	E:
1n	d3zowf_	F:
1o	d3zowg_	G:
1p	d3zowh_	H:
1q	d3zowi_	I:
1r	d3zowj_	J:

(no "CATH Domain" information available for 3ZOW)

(no "Pfam Domain" information available for 3ZOW)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R (CY552_NITEU | P95339)

molecular function
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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	Cis Peptide Bonds
		Ala M:33 - Asp M:34	[ RasMol ]
		Asp P:36 - Asp P:37	[ RasMol ]
		Val R:65 - Ser R:66	[ RasMol ]

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Access by PDB/NDB ID
	3zow
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		Orientation in Membranes	:	OPM
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		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
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Access by UniProt ID/Accession number
	CY552_NITEU \| P95339
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	1.7.2.2
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		Domain Information	:	XDom
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	CY552_NITEU \| P95339
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	CY552_NITEU \| P95339	:	1a56 1a8c 3zox 3zoy 4jcg

3zox	CRYSTAL STRUCTURE OF N64DEL MUTANT OF NITROSOMONAS EUROPAEA CYTOCHROME C552 (MONOCLINIC SPACE GROUP)
3zoy	CRYSTAL STRUCTURE OF N64DEL MUTANT OF NITROSOMONAS EUROPAEA CYTOCHROME C552 (HEXAGONAL SPACE GROUP)
4jcg

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 18)

Sites (18, 18)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 18)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

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