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(-) Description

Title :  PRIMARY SEQUENCE AND SOLUTION CONFORMATION OF FERROCYTOCHROME C-552 FROM NITROSOMONAS EUROPAEA, NMR, MEAN STRUCTURE REFINED WITHOUT HYDROGEN BOND CONSTRAINTS
 
Authors :  R. Timkovich, D. Bergmann, D. M. Arciero, A. B. Hooper
Date :  23 Mar 98  (Deposition) - 21 Oct 98  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A
Keywords :  Hemoprotein, Cytochrome, Prokaryotic Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Timkovich, D. Bergmann, D. M. Arciero, A. B. Hooper
Primary Sequence And Solution Conformation Of Ferrocytochrome C-552 From Nitrosomonas Europaea.
Biophys. J. V. 75 1964 1998
PubMed-ID: 9746537
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FERROCYTOCHROME C-552
    Chains: A
    Organism Scientific: NITROSOMONAS EUROPAEA
    Organism Taxid: 915
    Synonym: C-551

 Structural Features

(-) Chains, Units

  
NMR Structure : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1HEC1Ligand/IonHEME C

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:9 , CYS A:10 , ALA A:12 , CYS A:13 , HIS A:14 , VAL A:21 , GLY A:22 , PRO A:23 , ILE A:46 , SER A:50 , VAL A:53 , TRP A:54 , GLY A:55 , GLN A:56 , ILE A:57 , MET A:59 , ASN A:62 , VAL A:63 , ASN A:64BINDING SITE FOR RESIDUE HEC A 82

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1A8C)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1A8C)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1A8C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1A8C)

(-) Exons   (0, 0)

(no "Exon" information available for 1A8C)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:81
 aligned with CY552_NITEU | P95339 from UniProtKB/Swiss-Prot  Length:103

    Alignment length:81
                                    32        42        52        62        72        82        92       102 
          CY552_NITEU    23 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK 103
               SCOP domains d1a8ca_ A: Cytochrome c552                                                        SCOP domains
               CATH domains 1a8cA00 A:1-81 Cytochrome c                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhh..hhhh...........hhhhhhh......hhhhhhhhhhh...................hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 1a8c A   1 DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTLK  81
                                    10        20        30        40        50        60        70        80
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1A8C)

(-) Gene Ontology  (6, 6)

NMR Structure(hide GO term definitions)
Chain A   (CY552_NITEU | P95339)
molecular function
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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  1a8c
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  CY552_NITEU | P95339
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CY552_NITEU | P95339: 1a56 3zow 3zox 3zoy 4jcg

(-) Related Entries Specified in the PDB File

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