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Title :   NATIVE STRUCTURE OF FARNESYL PYROPHOSPHATE SYNTHASE FROM PSEUDOMONAS AERUGINOSA PA01, WITH BOUND FRAGMENT SPB02696, AND SUBSTRATE GERANYL PYROPHOSPHATE.

Authors :   J. W. Schmidberger, R. Schnell, G. Schneider

Date :   25 Feb 13 (Deposition) - 12 Mar 14 (Release) - 25 Mar 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.55

Chains :   Asym./Biol. Unit : A,B

Keywords :   Transferase, Pa4043 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. W. Schmidberger, R. Schnell, G. Schneider
Structural Characterization Of Substrate And Inhibitor Binding To Farnesyl Pyrophosphate Synthase From Pseudomonas Aeruginosa
Acta Crystallogr. , Sect. D V. 71 721 2015
PubMed-ID: 25760619 | Reference-DOI: 10.1107/S1399004715001121

Molecule 1 - FARNESYL PYROPHOSPHATE SYNTHASE
	Chains	:	A, B
	EC Number	:	2.5.1.10
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector	:	PET VECTOR WITH N-TERMINAL HIS
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA PAO1
	Organism Taxid	:	208964

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (5, 13)

No.	Name	Count	Type	Full Name
1	6H6	2	Ligand/Ion	3-(2-OXO-1,3-BENZOXAZOL-3(2H)-YL)PROPANOICACID
2	DMS	1	Ligand/Ion	DIMETHYL SULFOXIDE
3	GOL	2	Ligand/Ion	GLYCEROL
4	GPP	1	Ligand/Ion	GERANYL DIPHOSPHATE
5	MG	7	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:83 , ASP A:89 , MG A:1296 , GPP A:1297 , HOH A:2112 , HOH A:2113 , HOH A:2127	BINDING SITE FOR RESIDUE MG A1295
02	AC2	SOFTWARE	ASP A:83 , ASP A:89 , MG A:1295 , GPP A:1297 , HOH A:2114 , HOH A:2128	BINDING SITE FOR RESIDUE MG A1296
03	AC3	SOFTWARE	SER A:79 , ASP A:83 , ASP A:89 , ARG A:94 , VAL A:154 , GLN A:157 , LYS A:180 , MG A:1295 , MG A:1296 , HOH A:2114 , HOH A:2127 , HOH A:2128 , HOH A:2146 , HOH A:2295 , LEU B:111	BINDING SITE FOR RESIDUE GPP A1297
04	AC4	SOFTWARE	ASP A:223 , HOH A:2219 , HOH A:2250 , HOH A:2255 , HOH A:2256 , HOH A:2296	BINDING SITE FOR RESIDUE MG A1298
05	AC5	SOFTWARE	ILE B:2 , ALA B:3 , LYS B:44 , VAL B:46 , TYR B:289	BINDING SITE FOR RESIDUE 6H6 B1293
06	AC6	SOFTWARE	ALA A:3 , LYS A:44 , TYR A:289 , HOH A:2297	BINDING SITE FOR RESIDUE 6H6 A1299
07	AC7	SOFTWARE	ASP B:91 , LEU B:93 , HOH B:2129 , HOH B:2130 , HOH B:2131 , HOH B:2135	BINDING SITE FOR RESIDUE MG B1294
08	AC8	SOFTWARE	ASP B:89 , ASP B:91 , HOH B:2117 , HOH B:2118 , HOH B:2124	BINDING SITE FOR RESIDUE MG B1295
09	AC9	SOFTWARE	ASP B:223 , HOH B:2201 , HOH B:2231 , HOH B:2233 , HOH B:2234 , HOH B:2269	BINDING SITE FOR RESIDUE MG B1296
10	BC1	SOFTWARE	TYR B:5 , ARG B:12 , GLU B:56 , HOH B:2020 , HOH B:2270	BINDING SITE FOR RESIDUE GOL B1297
11	BC2	SOFTWARE	SER B:79 , ASP B:83 , MET B:153 , GLN B:157 , LYS B:180 , HOH B:2271	BINDING SITE FOR RESIDUE DMS B1298
12	BC3	SOFTWARE	GLU B:122 , ASP B:126 , ARG B:129 , HOH B:2034 , HOH B:2037	BINDING SITE FOR RESIDUE GOL B1299
13	BC4	SOFTWARE	ASP B:83 , ASP B:89 , HOH B:2115 , HOH B:2117 , HOH B:2123 , HOH B:2272	BINDING SITE FOR RESIDUE MG B1300

(no "SS Bond" information available for 3ZOU)

(no "Cis Peptide Bond" information available for 3ZOU)

(no "SAP(SNP)/Variant" information available for 3ZOU)

(no "PROSITE Motif" information available for 3ZOU)

(no "Exon" information available for 3ZOU)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:274
 aligned with Q9HWY4_PSEAE | Q9HWY4 from UniProtKB/TrEMBL  Length:295

    Alignment length:295
                             1                                                                                                                                                                                                                                                                                                     
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289     
         Q9HWY4_PSEAE     - -MIAAYQARCQARVDAALDALFVAPREELQRLYEAMRYSVMNGGKRVRPLLAYAACEALGGAPQRADAAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHRAFDEATAILAADGLQALAFEVLADTRRNPQEHAVCLEMLTRLARAAGSAGMVGGQAIDLGSVGVALDQAALEVMHRHKTGALIEASVRLGALASGRAEPASLAALERYAEAIGLAFQVQDDILDVESDTATLGKTQGKDQAHNKPTYPALLGLEAAKGYALELRDLALAALDGFPPSADPLRQLARYIVERR 294
               SCOP domains d3zoua_ A: automated matches                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.......ee..eehhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.--..hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh-------------------.hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zou A   0 SMIAAYQARCQARVDAALDALFVAPREELQRLYEAMRYSVMNGGKRVRPLLAYAACEALGGAPQRADAAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHRAFDEATAILAADGLQALAFEVLADTRRNPQEHAVCLEMLTRLARAAGSAGMVGGQAIDLGSV--ALDQAALEVMHRHKTGALIEASVRLGALASGRAEPASLAALERYAEAIGLAFQVQDDILDV-------------------PTYPALLGLEAAKGYALELRDLALAALDGFPPSADPLRQLARYIVERR 294
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159    |  169       179       189       199       209       219       | -         -       249       259       269       279       289     
                                                                                                                                                                                              164  |                                                         227                 247                                               
                                                                                                                                                                                                 167

Chain B from PDB  Type:PROTEIN  Length:273
 aligned with Q9HWY4_PSEAE | Q9HWY4 from UniProtKB/TrEMBL  Length:295

    Alignment length:293
                             1                                                                                                                                                                                                                                                                                                   
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289   
         Q9HWY4_PSEAE     - -MIAAYQARCQARVDAALDALFVAPREELQRLYEAMRYSVMNGGKRVRPLLAYAACEALGGAPQRADAAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHRAFDEATAILAADGLQALAFEVLADTRRNPQEHAVCLEMLTRLARAAGSAGMVGGQAIDLGSVGVALDQAALEVMHRHKTGALIEASVRLGALASGRAEPASLAALERYAEAIGLAFQVQDDILDVESDTATLGKTQGKDQAHNKPTYPALLGLEAAKGYALELRDLALAALDGFPPSADPLRQLARYIVE 292
               SCOP domains d3zoub_ B: automated matches                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.......ee..eehhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh--...hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh------------------.hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zou B   0 SMIAAYQARCQARVDAALDALFVAPREELQRLYEAMRYSVMNGGKRVRPLLAYAACEALGGAPQRADAAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHRAFDEATAILAADGLQALAFEVLADTRRNPQEHAVCLEMLTRLARAAGSAGMVGGQAIDLGS--VALDQAALEVMHRHKTGALIEASVRLGALASGRAEPASLAALERYAEAIGLAFQVQDDILDVE------------------PTYPALLGLEAAKGYALELRDLALAALDGFPPSADPLRQLARYIVE 292
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159   |  |169       179       189       199       209       219        |-         -       249       259       269       279       289   
                                                                                                                                                                                             163  |                                                           228                247                                             
                                                                                                                                                                                                166

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Terpenoid synthases (196)

Superfamily: Terpenoid synthases (196)

Family: automated matches (68)

Protein domain: automated matches (68)

Pseudomonas aeruginosa [TaxId: 208964] (5)

1a	d3zoua_	A:
1b	d3zoub_	B:

(no "CATH Domain" information available for 3ZOU)

(no "Pfam Domain" information available for 3ZOU)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (Q9HWY4_PSEAE | Q9HWY4)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0008299	isoprenoid biosynthetic process	The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 13)

Sites (13, 13)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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