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(-) Description

Title :  NATIVE STRUCTURE OF FARNESYL PYROPHOSPHATE SYNTHASE FROM PSEUDOMONAS AERUGINOSA PA01, WITH BOUND IBANDRONIC ACID MOLECULES.
 
Authors :  J. W. Schmidberger, R. Schnell, G. Schneider
Date :  18 May 14  (Deposition) - 11 Mar 15  (Release) - 25 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transferase, Fpps, Bonviva, Bisphosphonate (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. W. Schmidberger, R. Schnell, G. Schneider
Structural Characterization Of Substrate And Inhibitor Binding To Farnesyl Pyrophosphate Synthase From Pseudomonas Aeruginosa.
Acta Crystallogr. , Sect. D V. 71 721 2015
PubMed-ID: 25760619  |  Reference-DOI: 10.1107/S1399004715001121

(-) Compounds

Molecule 1 - GERANYLTRANSTRANSFERASE
    Chains: A, B
    EC Number: 2.5.1.10
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: PA01
    Synonym: FARNESYL PYROPHOSPHATE SYNTHASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 14)

Asymmetric/Biological Unit (2, 14)
No.NameCountTypeFull Name
1BFQ5Ligand/IonIBANDRONATE
2MG9Ligand/IonMAGNESIUM ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:83 , ASP A:89 , MG A:1295 , BFQ A:1297 , HOH A:2108 , HOH A:2109 , HOH A:2119BINDING SITE FOR RESIDUE MG A1294
02AC2SOFTWAREASP A:83 , ASP A:89 , MG A:1294 , BFQ A:1297 , HOH A:2110 , HOH A:2121BINDING SITE FOR RESIDUE MG A1295
03AC3SOFTWAREASP B:83 , ASP B:89 , MG B:1293 , BFQ B:1294 , HOH B:2111 , HOH B:2112 , HOH B:2119BINDING SITE FOR RESIDUE MG B1292
04AC4SOFTWAREASP B:83 , ASP B:89 , MG B:1292 , BFQ B:1294 , HOH B:2113 , HOH B:2120BINDING SITE FOR RESIDUE MG B1293
05AC5SOFTWAREBFQ B:1294 , BFQ B:1295 , HOH B:2251 , HOH B:2252BINDING SITE FOR RESIDUE MG B1296
06AC6SOFTWAREBFQ A:1297 , BFQ A:1298 , BFQ A:1299BINDING SITE FOR RESIDUE MG A1300
07AC7SOFTWAREBFQ A:1297 , BFQ A:1298 , HOH A:2142 , HOH A:2304BINDING SITE FOR RESIDUE MG A1301
08AC8SOFTWAREGLN A:219 , HOH A:2247 , HOH A:2248 , HOH A:2249 , HOH A:2250 , HOH A:2302BINDING SITE FOR RESIDUE MG A1296
09AC9SOFTWAREBFQ A:1299 , HOH A:2260 , HOH A:2261 , HOH A:2308 , HOH A:2309BINDING SITE FOR RESIDUE MG A1302
10BC1SOFTWARESER A:79 , LEU A:80 , ASP A:83 , ASP A:89 , ARG A:94 , MET A:153 , GLN A:157 , LYS A:180 , MG A:1294 , MG A:1295 , BFQ A:1298 , BFQ A:1299 , MG A:1300 , MG A:1301 , HOH A:2109 , HOH A:2110 , HOH A:2119 , HOH A:2121 , HOH A:2130 , HOH A:2142 , HOH A:2225 , HOH A:2303 , HOH A:2306BINDING SITE FOR RESIDUE BFQ A1297
11BC2SOFTWAREILE A:185 , PHE A:218 , ASP A:222 , BFQ A:1297 , BFQ A:1299 , MG A:1300 , MG A:1301 , HOH A:2142 , HOH A:2248 , HOH A:2250 , HOH A:2251 , HOH A:2261 , HOH A:2302 , HOH A:2304 , HOH A:2306 , HOH A:2307BINDING SITE FOR RESIDUE BFQ A1298
12BC3SOFTWAREASP A:160 , BFQ A:1297 , BFQ A:1298 , MG A:1300 , MG A:1302 , HOH A:2119 , HOH A:2121 , HOH A:2203 , HOH A:2225 , HOH A:2249 , HOH A:2255 , HOH A:2260 , HOH A:2261 , HOH A:2302 , HOH A:2306 , HOH A:2308 , HOH A:2310BINDING SITE FOR RESIDUE BFQ A1299
13BC4SOFTWAREHOH A:2159 , SER B:79 , LEU B:80 , ASP B:83 , ASP B:89 , ARG B:94 , GLN B:157 , LYS B:180 , MG B:1292 , MG B:1293 , BFQ B:1295 , MG B:1296 , HOH B:2112 , HOH B:2113 , HOH B:2119 , HOH B:2120 , HOH B:2128 , HOH B:2251 , HOH B:2253BINDING SITE FOR RESIDUE BFQ B1294
14BC5SOFTWAREASP B:222 , ASP B:226 , VAL B:227 , BFQ B:1294 , MG B:1296 , HOH B:2127 , HOH B:2219 , HOH B:2220 , HOH B:2222 , HOH B:2251 , HOH B:2253 , HOH B:2254BINDING SITE FOR RESIDUE BFQ B1295

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UMJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UMJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UMJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UMJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4UMJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.......ee..eehhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh..hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4umj A   2 IAAYQARCQARVDAALDALFVAPREELQRLYEAMRYSVMNGGKRVRPLLAYAACEALGGAPQRADAAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHRAFDEATAILAADGLQALAFEVLADTRRNPQEHAVCLEMLTRLARAAGSAGMVGGQAIDLGSLDQAALEVMHRHKTGALIEASVRLGALASGRAEPASLAALERYAEAIGLAFQVQDDILDVPTYPALLGLEAAKGYALELRDLALAALDGFPPSADPLRQLARYIVER 293
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161 ||    175       185       195       205       215       225 ||    254       264       274       284         
                                                                                                                                                                                           163|                                                        227|                                              
                                                                                                                                                                                            168                                                         247                                              


Chain B from PDB  Type:PROTEIN  Length:273
                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.......ee..eehhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh..hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4umj B   0 SMIAAYQARCQARVDAALDALFVAPREELQRLYEAMRYSVMNGGKRVRPLLAYAACEALGGAPQRADAAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHRAFDEATAILAADGLQALAFEVLADTRRNPQEHAVCLEMLTRLARAAGSAGMVGGQAIDLGSVGVALDQAALEVMHRHKTGALIEASVRLGALASGRAEPASLAALERYAEAIGLAFQVQDDILDVPTYPALLGLEAAKGYALELRDLALAALDGFPPSADPLRQLARYIV 291
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       248       258       268       278       288   
                                                                                                                                                                                                                                                             227|                                            
                                                                                                                                                                                                                                                              247
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UMJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UMJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UMJ)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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