3ZO8 - JenaLib

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Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   WILD-TYPE CHORISMATE MUTASE OF BACILLUS SUBTILIS AT 1.6 A RESOLUTION

Authors :   D. Burschowsky, A. Vaneerde, M. Okvist, A. Kienhofer, P. Kast, D. Hilve U. Krengel

Date :   20 Feb 13 (Deposition) - 16 Apr 14 (Release) - 24 Dec 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.59

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: D,E,F  (1x)
Biol. Unit 2: A,B,C  (1x)

Keywords :   Pseudo-Alpha Beta-Barrel, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Burschowsky, A. Van Eerde, M. Okvist, A. Kienhofer, P. Kast, D. Hilvert, U. Krengel
Electrostatic Transition State Stabilization Rather Than Reactant Destabilization Provides The Chemical Basis For Efficient Chorismate Mutase Catalysis.
Proc. Natl. Acad. Sci. Usa V. 111 17516 2014
PubMed-ID: 25422475 | Reference-DOI: 10.1073/PNAS.1408512111

Molecule 1 - CHORISMATE MUTASE AROH
	Chains	:	A, B, C, D, E, F
	EC Number	:	5.4.99.5
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	BACILLUS SUBTILIS
	Organism Taxid	:	1423
	Synonym	:	CM

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:				D	E	F
Biological Unit 2 (1x)	:	A	B	C

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3ZO8)

(no "Site" information available for 3ZO8)

(no "SS Bond" information available for 3ZO8)

(no "Cis Peptide Bond" information available for 3ZO8)

(no "SAP(SNP)/Variant" information available for 3ZO8)

Asymmetric Unit (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CHORISMATE_MUT_1	PS51167	Chorismate mutase domain profile.	AROH_BACSU	3-121	6	A:3-117 B:3-117 C:3-117 D:3-117 E:3-117 F:3-117

Biological Unit 1 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CHORISMATE_MUT_1	PS51167	Chorismate mutase domain profile.	AROH_BACSU	3-121	3	- - - D:3-117 E:3-117 F:3-117

Biological Unit 2 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CHORISMATE_MUT_1	PS51167	Chorismate mutase domain profile.	AROH_BACSU	3-121	3	A:3-117 B:3-117 C:3-117 - - -

(no "Exon" information available for 3ZO8)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:117
 aligned with AROH_BACSU | P19080 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:117
                                    10        20        30        40        50        60        70        80        90       100       110       
           AROH_BACSU     1 MMIRGIRGATTVERDTEEEILQKTKQLLEKIIEENHTKPEDVVQMLLSATPDLHAVFPAKAVRELSGWQYVPVTCMQEMDVTGGLKKCIRVMMTVQTDVPQDQIRHVYLEKVVVLRP 117
               SCOP domains --------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeee.......hhhhhhhhh.......eeeee..........eeeeeeeeee..hhhhh..ee.hhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --CHORISMATE_MUT_1  PDB: A:3-117 UniProt: 3-121                                                                       PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 3zo8 A   1 MMIRGIRGATTVERDTEEEILQKTKQLLEKIIEENHTKPEDVVQMLLSATPDLHAVFPAKAVRELSGWQYVPVTCMQEMDVTGGLKKCIRVMMTVQTDVPQDQIRHVYLEKAVVLRP 117
                                    10        20        30        40        50        60        70        80        90       100       110

Chain B from PDB  Type:PROTEIN  Length:117
 aligned with AROH_BACSU | P19080 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:117
                                    10        20        30        40        50        60        70        80        90       100       110       
           AROH_BACSU     1 MMIRGIRGATTVERDTEEEILQKTKQLLEKIIEENHTKPEDVVQMLLSATPDLHAVFPAKAVRELSGWQYVPVTCMQEMDVTGGLKKCIRVMMTVQTDVPQDQIRHVYLEKVVVLRP 117
               SCOP domains --------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeee.......hhhhhhhhh.......eeeee..........eeeeeeeee...hhhhh..ee.hhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --CHORISMATE_MUT_1  PDB: B:3-117 UniProt: 3-121                                                                       PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 3zo8 B   1 MMIRGIRGATTVERDTEEEILQKTKQLLEKIIEENHTKPEDVVQMLLSATPDLHAVFPAKAVRELSGWQYVPVTCMQEMDVTGGLKKCIRVMMTVQTDVPQDQIRHVYLEKAVVLRP 117
                                    10        20        30        40        50        60        70        80        90       100       110

Chain C from PDB  Type:PROTEIN  Length:117
 aligned with AROH_BACSU | P19080 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:117
                                    10        20        30        40        50        60        70        80        90       100       110       
           AROH_BACSU     1 MMIRGIRGATTVERDTEEEILQKTKQLLEKIIEENHTKPEDVVQMLLSATPDLHAVFPAKAVRELSGWQYVPVTCMQEMDVTGGLKKCIRVMMTVQTDVPQDQIRHVYLEKVVVLRP 117
               SCOP domains --------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeee.......hhhhhhhhh.......eeeee..........eeeeeeeee...hhhhh..ee.hhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --CHORISMATE_MUT_1  PDB: C:3-117 UniProt: 3-121                                                                       PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 3zo8 C   1 MMIRGIRGATTVERDTEEEILQKTKQLLEKIIEENHTKPEDVVQMLLSATPDLHAVFPAKAVRELSGWQYVPVTCMQEMDVTGGLKKCIRVMMTVQTDVPQDQIRHVYLEKAVVLRP 117
                                    10        20        30        40        50        60        70        80        90       100       110

Chain D from PDB  Type:PROTEIN  Length:117
 aligned with AROH_BACSU | P19080 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:117
                                    10        20        30        40        50        60        70        80        90       100       110       
           AROH_BACSU     1 MMIRGIRGATTVERDTEEEILQKTKQLLEKIIEENHTKPEDVVQMLLSATPDLHAVFPAKAVRELSGWQYVPVTCMQEMDVTGGLKKCIRVMMTVQTDVPQDQIRHVYLEKVVVLRP 117
               SCOP domains --------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee....hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.......hhhhhhhhh.......eeeee..........eeeeeeeeee..hhhhh..ee.hhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --CHORISMATE_MUT_1  PDB: D:3-117 UniProt: 3-121                                                                       PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 3zo8 D   1 MMIRGIRGATTVERDTEEEILQKTKQLLEKIIEENHTKPEDVVQMLLSATPDLHAVFPAKAVRELSGWQYVPVTCMQEMDVTGGLKKCIRVMMTVQTDVPQDQIRHVYLEKAVVLRP 117
                                    10        20        30        40        50        60        70        80        90       100       110

Chain E from PDB  Type:PROTEIN  Length:117
 aligned with AROH_BACSU | P19080 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:117
                                    10        20        30        40        50        60        70        80        90       100       110       
           AROH_BACSU     1 MMIRGIRGATTVERDTEEEILQKTKQLLEKIIEENHTKPEDVVQMLLSATPDLHAVFPAKAVRELSGWQYVPVTCMQEMDVTGGLKKCIRVMMTVQTDVPQDQIRHVYLEKVVVLRP 117
               SCOP domains --------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeee.......hhhhhhhh........eeeee..........eeeeeeeee...hhhhh..ee.hhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --CHORISMATE_MUT_1  PDB: E:3-117 UniProt: 3-121                                                                       PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 3zo8 E   1 MMIRGIRGATTVERDTEEEILQKTKQLLEKIIEENHTKPEDVVQMLLSATPDLHAVFPAKAVRELSGWQYVPVTCMQEMDVTGGLKKCIRVMMTVQTDVPQDQIRHVYLEKAVVLRP 117
                                    10        20        30        40        50        60        70        80        90       100       110

Chain F from PDB  Type:PROTEIN  Length:117
 aligned with AROH_BACSU | P19080 from UniProtKB/Swiss-Prot  Length:127

    Alignment length:117
                                    10        20        30        40        50        60        70        80        90       100       110       
           AROH_BACSU     1 MMIRGIRGATTVERDTEEEILQKTKQLLEKIIEENHTKPEDVVQMLLSATPDLHAVFPAKAVRELSGWQYVPVTCMQEMDVTGGLKKCIRVMMTVQTDVPQDQIRHVYLEKVVVLRP 117
               SCOP domains --------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee....hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeee........hhhhhh.........eeeee..........eeeeeeeee...hhhhh..ee.hhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --CHORISMATE_MUT_1  PDB: F:3-117 UniProt: 3-121                                                                       PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 3zo8 F   1 MMIRGIRGATTVERDTEEEILQKTKQLLEKIIEENHTKPEDVVQMLLSATPDLHAVFPAKAVRELSGWQYVPVTCMQEMDVTGGLKKCIRVMMTVQTDVPQDQIRHVYLEKAVVLRP 117
                                    10        20        30        40        50        60        70        80        90       100       110

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3ZO8)

(no "CATH Domain" information available for 3ZO8)

(no "Pfam Domain" information available for 3ZO8)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (AROH_BACSU | P19080)

molecular function
	GO:0004106	chorismate mutase activity	Catalysis of the reaction: chorismate = prephenate.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
biological process
	GO:0009073	aromatic amino acid family biosynthetic process	The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
	GO:0008652	cellular amino acid biosynthetic process	The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
	GO:0046417	chorismate metabolic process	The chemical reactions and pathways involving chorismate, the anion of (3R-trans)-3-((1-carboxyethenyl)oxy)-4-hydroxy-1,5-cyclohexadiene-1-carboxylic acid.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
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Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	3zo8
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	AROH_BACSU \| P19080
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	AROH_BACSU \| P19080
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UniProtKB/Swiss-Prot
	AROH_BACSU \| P19080	:	1com 1dbf 1fnj 1fnk 2chs 2cht 3zop 3zp4 3zp7

3zop	ARG90CIT CHORISMATE MUTASE OF BACILLUS SUBTILIS AT 1.6 A RESOLUTION
3zp4	ARG90CIT CHORISMATE MUTASE OF BACILLUS SUBTILIS IN COMPLEX WITH A TRANSITION STATE ANALOG
3zp7	ARG90CIT CHORISMATE MUTASE OF BACILLUS SUBTILIS IN COMPLEX WITH CHORISMATE AND PREPHENATE

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