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(-) Description

Authors :  M. Mctigue, Y. Deng, W. Liu, A. Brooun, A. Stewart
Date :  08 Nov 12  (Deposition) - 12 Jun 13  (Release) - 03 Jul 13  (Revision)
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Tyrosine Kinase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
Reference :  M. M. Awad, R. Katayama, M. Mctigue, W. Liu, Y. Deng, A. Brooun, L. Friboulet, D. Huang, M. D. Falk, S. Timofeevski, K. D. Wilner, E. L. Lockerman, T. M. Khan, S. Mahmood, J. F. Gainor, S. R. Digumarthy, J. R. Stone, M. Mino-Kenudson, J. G. Christensen, J. Iafrate, J. A. Engelman, A. T. Shaw
Acquired Resistance To Crizotinib From A Mutation In Cd74-Ros1
N. Engl. J. Med. V. 368 2395 2013
PubMed-ID: 23724914  |  Reference-DOI: 10.1056/NEJMOA1215530

(-) Compounds

    EC Number2.7.10.1
    Expression System Cell LineSF21
    Expression System PlasmidPFASTBAC
    Expression System Taxid7108
    Expression System Vector TypeBACULOVIRUS
    FragmentKINASE DOMAIN, RESIDUES 1934-2232
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
1AC1SOFTWAREALA A:1978 , LEU A:2010 , GLU A:2027 , MET A:2029 , GLY A:2032 , ASP A:2033 , ARG A:2083 , ASN A:2084 , LEU A:2086 , GLY A:2101 , ASP A:2102BINDING SITE FOR RESIDUE VGH A3000

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3ZBF)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
1Glu A:2020 -Pro A:2021
2Leu A:2123 -Pro A:2124

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (9, 9)

Asymmetric/Biological Unit (9, 9)
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
2UniProtVAR_041456K2003RROS1_HUMANUnclassified  ---AK2003R
4UniProtVAR_041457F2138SROS1_HUMANUnclassified  ---AF2138S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (3, 3)

Asymmetric/Biological Unit (3, 3)
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.ROS1_HUMAN1951-1980  1A:1951-1980
2PROTEIN_KINASE_TYRPS00109 Tyrosine protein kinases specific active-site signature.ROS1_HUMAN2075-2087  1A:2075-2087
3RECEPTOR_TYR_KIN_IIPS00239 Receptor tyrosine kinase class II signature.ROS1_HUMAN2108-2116  1A:2108-2110

(-) Exons   (0, 0)

(no "Exon" information available for 3ZBF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:282
 aligned with ROS1_HUMAN | P08922 from UniProtKB/Swiss-Prot  Length:2347

    Alignment length:297
                                  1943      1953      1963      1973      1983      1993      2003      2013      2023      2033      2043      2053      2063      2073      2083      2093      2103      2113      2123      2133      2143      2153      2163      2173      2183      2193      2203      2213      2223       
               SCOP domains d3zbfa_ A: automated    matches                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author Sec.struct. author
             SAPs(SNPs) (1) -----------------------------------------------------------------N---R-----------------------------------H--------------------------------------------------------------------------------------------------S----------------------------------------------------------------N---------E--------------QC- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N----------------- SAPs(SNPs) (2)
                    PROSITE -----------------PROTEIN_KINASE_ATP            ----------------------------------------------------------------------------------------------PROTEIN_KINAS--------------------RECEPTOR_------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                                  1943      1953   |  1963      1973      1983      1993      2003      2013      2023      2033      2043      2053      2063      2073      2083      2093      2103      |  -      2123      2133      2143      2153      2163      2173      2183      2193      2203      2213      2223       
                                            1953   |                                                                                                                                                     2110         2123                                                                                                           

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ZBF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ZBF)

(-) Gene Ontology  (28, 28)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (ROS1_HUMAN | P08922)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0019903    protein phosphatase binding    Interacting selectively and non-covalently with any protein phosphatase.
    GO:0004713    protein tyrosine kinase activity    Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0004714    transmembrane receptor protein tyrosine kinase activity    Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate.
biological process
    GO:0030154    cell differentiation    The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
    GO:0016049    cell growth    The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
    GO:0008283    cell proliferation    The multiplication or reproduction of cells, resulting in the expansion of a cell population.
    GO:0002066    columnar/cuboidal epithelial cell development    The process whose specific outcome is the progression of a columnar/cuboidal epithelial cell over time, from its formation to the mature structure. A columnar/cuboidal epithelial cell is a cell usually found in a two dimensional sheet with a free surface. Columnar/cuboidal epithelial cells take on the shape of a column or cube.
    GO:0010629    negative regulation of gene expression    Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:0038083    peptidyl-tyrosine autophosphorylation    The phosphorylation by a protein of one or more of its own tyrosine amino acid residues, or a tyrosine residue on an identical protein.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:0070372    regulation of ERK1 and ERK2 cascade    Any process that modulates the frequency, rate or extent of signal transduction mediated by the ERK1 and ERK2 cascade.
    GO:0032006    regulation of TOR signaling    Any process that modulates the frequency, rate or extent of TOR signaling.
    GO:0010966    regulation of phosphate transport    Any process that modulates the frequency, rate or extent of phosphate transport. Phosphate transport is the directed movement of phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0023014    signal transduction by protein phosphorylation    A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate.
    GO:0007283    spermatogenesis    The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
    GO:0007169    transmembrane receptor protein tyrosine kinase signaling pathway    A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription.
cellular component
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0048471    perinuclear region of cytoplasm    Cytoplasm situated near, or occurring around, the nucleus.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.


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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

        ROS1_HUMAN | P089224uxl

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3ZBF)