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(-) Description

Title :  CRYSTAL STRUCTURE OF MELB HOLO-PROTYROSINASE FROM ASPERUGILLUS ORYZAE
 
Authors :  N. Fujieda, S. Yabuta, T. Ikeda, T. Oyama, N. Muraki, G. Kurisu, S. Itoh
Date :  22 Feb 13  (Deposition) - 19 Jun 13  (Release) - 19 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.39
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Four Helix Bundle, Metal Binding Protein, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Fujieda, S. Yabuta, T. Ikeda, T. Oyama, N. Muraki, G. Kurisu, S. Itoh
Crystal Structures Of Copper-Depleted And Copper-Bound Fungal Pro-Tyrosinase: Insights Into Endogenous Cysteine-Dependent Copper Incorporation
J. Biol. Chem. 2013
PubMed: search  |  Reference-DOI: 10.1074/JBC.M113.477612

(-) Compounds

Molecule 1 - TYROSINASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: ASPERGILLUS ORYZAE
    Organism Taxid: 5062

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1CU4Ligand/IonCOPPER (II) ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:67 , HIS A:94 , HIS A:103 , CU A:702 , HOH A:1001 , HOH A:1002BINDING SITE FOR RESIDUE CU A 701
2AC2SOFTWAREHIS A:328 , HIS A:332 , HIS A:372 , CU A:701 , HOH A:1001 , HOH A:1002BINDING SITE FOR RESIDUE CU A 702
3AC3SOFTWAREHIS B:67 , HIS B:94 , HIS B:103 , CU B:702 , HOH B:801 , HOH B:802BINDING SITE FOR RESIDUE CU B 701
4AC4SOFTWAREHIS B:328 , HIS B:332 , HIS B:372 , CU B:701 , HOH B:801 , HOH B:802BINDING SITE FOR RESIDUE CU B 702

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3W6W)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Ser A:1 -Pro A:2
2Ala A:69 -Pro A:70
3Arg A:207 -Pro A:208
4Arg A:405 -Pro A:406
5Ser B:1 -Pro B:2
6Ala B:69 -Pro B:70
7Arg B:207 -Pro B:208
8Arg B:405 -Pro B:406

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3W6W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3W6W)

(-) Exons   (0, 0)

(no "Exon" information available for 3W6W)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:583
 aligned with Q2UP46_ASPOR | Q2UP46 from UniProtKB/TrEMBL  Length:638

    Alignment length:639
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    581                                                    
                             1                                                                                                                                                                                                                                                                                                                                                                                 373  374                                                                                                                                                                                                           580 |                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369   |   375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575    | |584       594       604       614       624         
         Q2UP46_ASPOR     - -MPYLITGIPKDPKHPLPIRKDIDDWYLEQTSAGSNRIQLTLFVEALTVIQNRPLNDQLSYFRLAGIHGAPWTEWDGVPGGQKDSKGNPTGFCVHNNYTFPTWHRVYVTLYEQVIYEAMLDFIKQNVPQNGKADWENEAKQWRLPYWDFARFARHGHDNTQGDELRLPILVTMPMVKVLVPGQPGKQLSKPNPLYRFQMQTLMGTLERPYAITSQKTEEHGWSFDLPFDKCQSTTKYGLLENYNADVWADGGQNWLRANLALNEHPWYQNLDGWASVPTLQDMTFRLLTTGGLNWGEFSSTRYDDKKEEAQPKNNEQAPKNWMNLEAIHNNVHNWVGGFMFSRPGRHDLKLWGAGHMSSVPVAAFDPIFWLHHW----LTAIWQTVNSGSWFNDDKSKVSKDDDLRPFHRFCEKTRKVVFFRSDDVKDWRSLNYDYAITKDASRIRKEISDLYGQRTKEVYKDFGEEDYILSIRYSRYALGGKPFQINIFFGDVDGKDFYDARSQNFVGSVFNFSGSLEDSNCDKCAQQEQEGVLSVSQLPARLAVHYYKKQNKGEVPTPRYVVVNSQGKAEAEVKVEVALHKTE-VFHSVDSESWDLRMEHTHCFSTHGMGGHYHYDTTAEVVEYEAWLNTAKVIYRI 633
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhhhhh....hhhhhhhhhhhhhhhhh......hhhhhhhh...............................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............-------......hhhhhh.eeeee.......eeeee..........hhhhh....................hhhhh............hhhhhhhh..hhhhhhhhhh..hhhhhh......hhhhhhhhhhhhh...hhhhhhh.ee..------------hhhhh.hhhhhhhhhhhhhhhee............ee.hhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhh.........eeee....eeee.hhhhhhhhhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhh....eeeeeeeeee........eeeeeee...............eeeeeee..............------.eeeeeeehhhhhhhhhhhh......eeeeee............eeeeeeee....-------..eeeee--------------.ee...hh----------hhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3w6w A   0 GSPYLITGIPKDPKHPLPIRKDIDDWYLEQTSAGSNRIQLTLFVEALTVIQNRPLNDQLSYFRLAGIHGAPWTEWDGVPGGQKDSKGNPTGFCVHNNYTFPTWHRVYVTLYEQVIYEAMLDFIKQNVPQNGKADWENEAKQWRLPYWDFARFAR-------GDELRLPILVTMPMVKVLVPGQPGKQLSKPNPLYRFQMQTLMGTLERPYAITSQKTEEHGWSFDLPFDKCQSTTKYGLLENYNADVWADGGQNWLRANLALNEHPWYQNLDGWDSVPTLQDMTFRLLTTGGLNWGEFSSTRYDD------------APKNWMNLEAIHNNVHNWVGGFMFSRPGRHDLKLWGAGHMSSVPVAAYDPIFWLHHCNIDRLTAIWQTVNSGSWFNDDKSKVSKDDDLRPFHRFCEKTRKVVFFRSDDVKDWRSLNYDYAITKDASRIRKEISDLYGQRTKEVYKDFGEEDYILSIRYSRYALGGKPFQINIFFGDVDGKDFYDARSQNFVGSVFNFSGSLEDSNCDKCA------VLSVSQLPARLAVHYYKKQNKGEVPTPRYVVVNSQGKAEAEVKVEVALHKTEGTFY-------DYRRVAD--------------GKRAEVDD----------AYRA 616
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149   |     - |     169       179       189       199       209       219       229       239       249       259       269       279       289       299    |    -       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519      |  -   |   539       549       559       569       579        |-      |601  |      -       607    |    -     |   
                                                                                                                                                                                   153     161                                                                                                                                            304          317                                                                                                                                                                                                              526    533                                                    588     598   604            605    612        613   


Chain B from PDB  Type:PROTEIN  Length:555
 aligned with Q2UP46_ASPOR | Q2UP46 from UniProtKB/TrEMBL  Length:638

    Alignment length:638
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   581                                                    
                                                                                                                                                                                                                                                                                                                                                                                                              373  374                                                                                                                                                                                                           580 |                                                    
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370  |    376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576   | | 585       595       605       615       625        
         Q2UP46_ASPOR     1 MPYLITGIPKDPKHPLPIRKDIDDWYLEQTSAGSNRIQLTLFVEALTVIQNRPLNDQLSYFRLAGIHGAPWTEWDGVPGGQKDSKGNPTGFCVHNNYTFPTWHRVYVTLYEQVIYEAMLDFIKQNVPQNGKADWENEAKQWRLPYWDFARFARHGHDNTQGDELRLPILVTMPMVKVLVPGQPGKQLSKPNPLYRFQMQTLMGTLERPYAITSQKTEEHGWSFDLPFDKCQSTTKYGLLENYNADVWADGGQNWLRANLALNEHPWYQNLDGWASVPTLQDMTFRLLTTGGLNWGEFSSTRYDDKKEEAQPKNNEQAPKNWMNLEAIHNNVHNWVGGFMFSRPGRHDLKLWGAGHMSSVPVAAFDPIFWLHHW----LTAIWQTVNSGSWFNDDKSKVSKDDDLRPFHRFCEKTRKVVFFRSDDVKDWRSLNYDYAITKDASRIRKEISDLYGQRTKEVYKDFGEEDYILSIRYSRYALGGKPFQINIFFGDVDGKDFYDARSQNFVGSVFNFSGSLEDSNCDKCAQQEQEGVLSVSQLPARLAVHYYKKQNKGEVPTPRYVVVNSQGKAEAEVKVEVALHKTE-VFHSVDSESWDLRMEHTHCFSTHGMGGHYHYDTTAEVVEYEAWLNTAKVIYRI 633
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....................hhhhhhhhhh.....hhhhhhhhhhhhhhhhh......hhhhhhhh..............--------.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................---.......hhhhh.eeeee.......eeeee..........hhhhh.......----------...hhhhh............hhhhhhhh..hhhhhhhhhh..hhhhhh......hhhhhhhhhhhhh...hhhhhhh.ee.-------------hhhhh.hhhhhhhhhhhhhhhee............ee.hhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhh.........eeee....eeee.hhhhhhhhhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhh....eeeeeeeee.........eeeeeee...............eeeeeee..------------------.eeeeeeehhhhhhhhhhhh......eeeeee...........eeeeeeeee....-------..eeeee--------------.ee...hh----------hhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3w6w B   1 SPYLITGIPKDPKHPLPIRKDIDDWYLEQTSAGSNRIQLTLFVEALTVIQNRPLNDQLSYFRLAGIHGAPWTEWDGVPGG--------TGFCVHNNYTFPTWHRVYVTLYEQVIYEAMLDFIKQNVPQNGKADWENEAKQWRLPYWDFARFARHGHD---GDELRLPILVTMPMVKVLVPGQPGKQLSKPNPLYRFQMQTLMGTLERPYAIT----------FDLPFDKCQSTTKYGLLENYNADVWADGGQNWLRANLALNEHPWYQNLDGWDSVPTLQDMTFRLLTTGGLNWGEFSSTRYD-------------APKNWMNLEAIHNNVHNWVGGFMFSRPGRHDLKLWGAGHMSSVPVAAYDPIFWLHHCNIDRLTAIWQTVNSGSWFNDDKSKVSKDDDLRPFHRFCEKTRKVVFFRSDDVKDWRSLNYDYAITKDASRIRKEISDLYGQRTKEVYKDFGEEDYILSIRYSRYALGGKPFQINIFFGDVDGKDFYDARSQNFVGSVFNFS------------------VLSVSQLPARLAVHYYKKQNKGEVPTPRYVVVNSQGKAEAEVKVEVALHKTEGTFY-------DYRRVAD--------------GKRAEVDD----------AYRA 616
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      |  -|      170       180       190       200       210 |       -  |    230       240       250       260       270       280       290       300  |      -      |320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510   |     -         -  |    540       550       560       570       580       | -     | 602 |       -      |608   |     -    |   
                                                                                                          80       89                                                                 157 161                                                212        223                                                                             303           317                                                                                                                                                                                                  514                533                                                    588     598   604            605    612        613
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3W6W)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3W6W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3W6W)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q2UP46_ASPOR | Q2UP46)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004503    monophenol monooxygenase activity    Catalysis of the reaction: L-tyrosine + L-DOPA + O2 = L-DOPA + DOPAquinone + H2O.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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  3w6w
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q2UP46_ASPOR | Q2UP46: 3w6q

(-) Related Entries Specified in the PDB File

3w6q