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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   L-LACTATE DEHYDROGENASE FROM THERMUS CALDOPHILUS GK24 COMPLEXED WITH OXAMATE, NADH AND FBP

Authors :   K. Arai, T. Ohno, A. Miyanaga, S. Fushinobu, H. Taguchi

Date :   01 Mar 12 (Deposition) - 06 Mar 13 (Release) - 08 Oct 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Rossmann Fold, Dehydrogenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Ikehara, K. Arai, N. Furukawa, T. Ohno, T. Miyake, S. Fushinobu, M. Nakajima, A. Miyanaga, H. Taguchi
The Core Of Allosteric Motion In Thermus Caldophilus L-Lactate Dehydrogenase.
J. Biol. Chem. 2014
PubMed-ID: 25258319 | Reference-DOI: 10.1074/JBC.M114.599092

Molecule 1 - L-LACTATE DEHYDROGENASE
	Chains	:	A, B, C, D
	EC Number	:	1.1.1.27
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	LDH
	Organism Scientific	:	THERMUS CALDOPHILUS
	Organism Taxid	:	272
	Synonym	:	L-LDH

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 13)

No.	Name	Count	Type	Full Name
1	FBP	2	Ligand/Ion	BETA-FRUCTOSE-1,6-DIPHOSPHATE
2	GOL	4	Ligand/Ion	GLYCEROL
3	NAD	3	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4	OXM	4	Ligand/Ion	OXAMIC ACID

Asymmetric Unit (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:138 , LEU A:165 , ARG A:169 , HIS A:193 , ALA A:237 , THR A:247 , NAD A:403 , HOH A:553	BINDING SITE FOR RESIDUE OXM A 401
02	AC2	SOFTWARE	ARG A:171 , GLN A:183 , HIS A:186 , TYR A:188 , HOH A:505 , HOH A:510 , HOH A:515 , HOH A:538 , HOH A:559 , ARG D:171 , GLN D:183 , HIS D:186 , TYR D:188 , HOH D:504	BINDING SITE FOR RESIDUE FBP A 402
03	AC3	SOFTWARE	VAL A:26 , GLY A:27 , GLY A:29 , MET A:30 , VAL A:31 , ASP A:52 , LEU A:53 , LEU A:57 , TYR A:83 , ALA A:95 , ALA A:96 , GLY A:97 , VAL A:120 , ALA A:136 , THR A:137 , ASN A:138 , SER A:161 , HIS A:193 , THR A:247 , ILE A:251 , OXM A:401 , HOH A:506 , HOH A:512 , HOH A:526 , HOH A:540 , HOH A:566 , HOH A:606 , HOH A:608 , GLY B:103 , GLN B:108	BINDING SITE FOR RESIDUE NAD A 403
04	AC4	SOFTWARE	ILE A:164 , THR A:167 , ALA A:168 , ARG A:171 , GLN A:183 , HOH A:511 , PRO B:70 , PHE B:71	BINDING SITE FOR RESIDUE GOL A 404
05	AC5	SOFTWARE	ASN B:138 , ARG B:169 , HIS B:193 , ALA B:237 , THR B:247 , NAD B:403 , HOH B:553	BINDING SITE FOR RESIDUE OXM B 401
06	AC6	SOFTWARE	ARG B:171 , GLN B:183 , HIS B:186 , TYR B:188 , HOH B:512 , HOH B:514 , HOH B:519 , HOH B:523 , HOH B:535 , HOH B:557 , ARG C:171 , GLN C:183 , HIS C:186 , TYR C:188 , HOH C:512	BINDING SITE FOR RESIDUE FBP B 402
07	AC7	SOFTWARE	GLY B:27 , GLY B:29 , MET B:30 , VAL B:31 , ASP B:52 , LEU B:53 , LEU B:57 , TYR B:83 , ALA B:95 , ALA B:96 , GLY B:97 , VAL B:116 , VAL B:120 , ALA B:136 , THR B:137 , ASN B:138 , SER B:161 , HIS B:193 , THR B:247 , ILE B:251 , OXM B:401 , HOH B:517 , HOH B:541 , HOH B:579 , HOH B:582 , HOH B:608 , HOH B:627	BINDING SITE FOR RESIDUE NAD B 403
08	AC8	SOFTWARE	PHE A:71 , ILE B:164 , THR B:167 , ALA B:168 , ARG B:171 , GLN B:183 , HOH B:519 , HOH B:529 , HOH B:641	BINDING SITE FOR RESIDUE GOL B 404
09	AC9	SOFTWARE	ASN C:138 , ARG C:169 , HIS C:193 , ALA C:237 , THR C:247 , HOH C:521 , HOH C:548	BINDING SITE FOR RESIDUE OXM C 401
10	BC1	SOFTWARE	HOH B:557 , ILE C:164 , THR C:167 , ALA C:168 , ARG C:171 , HOH C:507 , HOH C:518 , PHE D:71	BINDING SITE FOR RESIDUE GOL C 402
11	BC2	SOFTWARE	ASN D:138 , ARG D:169 , HIS D:193 , ALA D:237 , THR D:247 , NAD D:402 , HOH D:575	BINDING SITE FOR RESIDUE OXM D 401
12	BC3	SOFTWARE	GLY C:103 , VAL D:26 , GLY D:27 , GLY D:29 , MET D:30 , VAL D:31 , ASP D:52 , LEU D:53 , LEU D:57 , TYR D:83 , ALA D:95 , ALA D:96 , GLY D:97 , VAL D:116 , VAL D:120 , ALA D:136 , THR D:137 , ASN D:138 , SER D:161 , HIS D:193 , THR D:247 , ILE D:251 , OXM D:401 , HOH D:520	BINDING SITE FOR RESIDUE NAD D 402
13	BC4	SOFTWARE	PRO C:70 , PHE C:71 , ILE D:164 , THR D:167 , ALA D:168 , ARG D:171 , HOH D:514	BINDING SITE FOR RESIDUE GOL D 403

(no "SS Bond" information available for 3VPH)

Asymmetric/Biological Unit

No.	Residues
1	Asn A:138	-	Pro A:139
2	Asn B:138	-	Pro B:139
3	Asn C:138	-	Pro C:139
4	Asn D:138	-	Pro D:139

(no "SAP(SNP)/Variant" information available for 3VPH)

Asymmetric/Biological Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	L_LDH	PS00064	L-lactate dehydrogenase active site.	LDH_THECA	169-175	4	A:190-196 B:190-196 C:190-196 D:190-196

(no "Exon" information available for 3VPH)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:310
 aligned with LDH_THECA | P06150 from UniProtKB/Swiss-Prot  Length:310

    Alignment length:310
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310
           LDH_THECA      1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVRAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVAYRLSALPPGRVVGSGTILDTARFRALLAEHLRVAPQSVHAYVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVRAILTDEKGVYTVSAFTPEVEGVLEVSLSLPRILGAGGVEGTVYPSLSPEEREALRRSAEILKEAAFALGF  310
               SCOP domains d3vpha1 A:21-162 Lactate dehydrogenase                                                                                                       d3vpha2 A:163-330 Lactate dehydrogenase                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhhh...eeee.hhhhhh...eeee..........hhhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhh.hhh.eee..hhhhhhhhhhhhhhhhh.hhhhh...ee.......ee.....ee..eehhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...eeeeeeeeeeee..eeeeeeeeeeeee..eeeee.....hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------L_LDH  --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3vph A   21 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVRAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVAYRLSALPPGRVVGSGTILDTARFRALLAEHLRVAPQSVHAYVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVRAILTDEKGVYTVSAFTPEVEGVLEVSLSLPRILGAGGVEGTVYPSLSPEEREALRRSAEILKEAAFALGF  330
                                    30        40        50        60        70  ||    81        91       101       111       121       131       141       151       161       171       181       191       201       211      220B       230       240       250       260       270       280       290       300       310       320       330
                                                                               73|                                                                                                                                             220A|                                                                                                              
                                                                                75                                                                                                                                              220B

Chain B from PDB  Type:PROTEIN  Length:310
 aligned with LDH_THECA | P06150 from UniProtKB/Swiss-Prot  Length:310

    Alignment length:310
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310
           LDH_THECA      1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVRAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVAYRLSALPPGRVVGSGTILDTARFRALLAEHLRVAPQSVHAYVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVRAILTDEKGVYTVSAFTPEVEGVLEVSLSLPRILGAGGVEGTVYPSLSPEEREALRRSAEILKEAAFALGF  310
               SCOP domains d3vphb1 B:21-162 Lactate dehydrogenase                                                                                                       d3vphb2 B:163-330 Lactate dehydrogenase                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhhhhhhh...eeee.hhhhhh...eeee..........hhhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhh.hhh.eee..hhhhhhhhhhhhhhhhh.hhh.ee..ee.......ee.....ee..eehhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..eeeeeeeeeeee..eeeeeeeeeeeee..eeeee.....hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------L_LDH  --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3vph B   21 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVRAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVAYRLSALPPGRVVGSGTILDTARFRALLAEHLRVAPQSVHAYVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVRAILTDEKGVYTVSAFTPEVEGVLEVSLSLPRILGAGGVEGTVYPSLSPEEREALRRSAEILKEAAFALGF  330
                                    30        40        50        60        70  ||    81        91       101       111       121       131       141       151       161       171       181       191       201       211      220B       230       240       250       260       270       280       290       300       310       320       330
                                                                               73|                                                                                                                                             220A|                                                                                                              
                                                                                75                                                                                                                                              220B

Chain C from PDB  Type:PROTEIN  Length:310
 aligned with LDH_THECA | P06150 from UniProtKB/Swiss-Prot  Length:310

    Alignment length:310
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310
           LDH_THECA      1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVRAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVAYRLSALPPGRVVGSGTILDTARFRALLAEHLRVAPQSVHAYVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVRAILTDEKGVYTVSAFTPEVEGVLEVSLSLPRILGAGGVEGTVYPSLSPEEREALRRSAEILKEAAFALGF  310
               SCOP domains d3vphc1 C:21-162 Lactate dehydrogenase                                                                                                       d3vphc2 C:163-330 Lactate dehydrogenase                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhhhhhhh...eeee.hhhhhh...eeee..........hhhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhh.hhh.eee..hhhhhhhhhhhhhhhhh.hhhhh...ee.......ee.....ee..eehhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...eeeeeeeeeeee..eeeeeeeeeeeee..eeeee.....hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------L_LDH  --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3vph C   21 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVRAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVAYRLSALPPGRVVGSGTILDTARFRALLAEHLRVAPQSVHAYVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVRAILTDEKGVYTVSAFTPEVEGVLEVSLSLPRILGAGGVEGTVYPSLSPEEREALRRSAEILKEAAFALGF  330
                                    30        40        50        60        70  ||    81        91       101       111       121       131       141       151       161       171       181       191       201       211      220B       230       240       250       260       270       280       290       300       310       320       330
                                                                               73|                                                                                                                                             220A|                                                                                                              
                                                                                75                                                                                                                                              220B

Chain D from PDB  Type:PROTEIN  Length:310
 aligned with LDH_THECA | P06150 from UniProtKB/Swiss-Prot  Length:310

    Alignment length:310
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310
           LDH_THECA      1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVRAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVAYRLSALPPGRVVGSGTILDTARFRALLAEHLRVAPQSVHAYVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVRAILTDEKGVYTVSAFTPEVEGVLEVSLSLPRILGAGGVEGTVYPSLSPEEREALRRSAEILKEAAFALGF  310
               SCOP domains d3vphd1 D:21-162 Lactate dehydrogenase                                                                                                       d3vphd2 D:163-330 Lactate dehydrogenase                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhhh...eeee.hhhhhh...eeee..........hhhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhh.hhh.eee..hhhhhhhhhhhhhhhhh.hhhhh...ee.......ee.....ee..eehhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...eeeeeeeeeeee..eeeeeeeeeeeee..eeeee.....hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------L_LDH  --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3vph D   21 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVRAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVAYRLSALPPGRVVGSGTILDTARFRALLAEHLRVAPQSVHAYVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVRAILTDEKGVYTVSAFTPEVEGVLEVSLSLPRILGAGGVEGTVYPSLSPEEREALRRSAEILKEAAFALGF  330
                                    30        40        50        60        70  ||    81        91       101       111       121       131       141       151       161       171       181       191       201       211      220B       230       240       250       260       270       280       290       300       310       320       330
                                                                               73|                                                                                                                                             220A|                                                                                                              
                                                                                75                                                                                                                                              220B

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: LDH C-terminal domain-like (172)

Superfamily: LDH C-terminal domain-like (172)

Family: Lactate & malate dehydrogenases, C-terminal domain (125)

Protein domain: Lactate dehydrogenase (55)

Thermus caldophilus [TaxId: 272] (2)

1a	d3vpha2	A:163-330
1b	d3vphb2	B:163-330
1c	d3vphc2	C:163-330
1d	d3vphd2	D:163-330

Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: LDH N-terminal domain-like (117)

Protein domain: Lactate dehydrogenase (53)

Thermus caldophilus [TaxId: 272] (2)

2a	d3vpha1	A:21-162
2b	d3vphb1	B:21-162
2c	d3vphc1	C:21-162
2d	d3vphd1	D:21-162

(no "CATH Domain" information available for 3VPH)

(no "Pfam Domain" information available for 3VPH)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (LDH_THECA | P06150)

molecular function
	GO:0004459	L-lactate dehydrogenase activity	Catalysis of the reaction: (S)-lactate + NAD+ = pyruvate + NADH + H+.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0019752	carboxylic acid metabolic process	The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
	GO:0006096	glycolytic process	The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Asn A:138 - Pro A:139	[ RasMol ]
		Asn B:138 - Pro B:139	[ RasMol ]
		Asn C:138 - Pro C:139	[ RasMol ]
		Asn D:138 - Pro D:139	[ RasMol ]

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Access by PDB/NDB ID
	3vph
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
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Access by UniProt ID/Accession number
	LDH_THECA \| P06150
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	1.1.1.27
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		Domain Information	:	XDom
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	LDH_THECA \| P06150
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UniProtKB/Swiss-Prot
	LDH_THECA \| P06150	:	3vpg

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 13)

Sites (13, 13)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 8)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (9, 9)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File