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(-) Description

Title :  THE INSERTION MUTANT Y61GG OF TM CEL12A
 
Authors :  Y. -S. Cheng, T. -P. Ko, R. -T. Guo, J. -R. Liu
Date :  30 Aug 11  (Deposition) - 11 Jul 12  (Release) - 17 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.93
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Jelly Roll, Hydrolase, Cellulose (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. -S. Cheng, T. -P. Ko, J. W. Huang, T. H. Wu, C. Y. Lin, W. Luo, Q. Li, Y. Ma C. H. Huang, A. H. Wang, J. -R. Liu, R. -T. Guo
Enhanced Activity Of Thermotoga Maritima Cellulase 12A By Mutating A Unique Surface Loop
Appl. Microbiol. Biotechnol. V. 95 661 2012
PubMed-ID: 22170108  |  Reference-DOI: 10.1007/S00253-011-3791-4

(-) Compounds

Molecule 1 - ENDO-1,4-BETA-GLUCANASE
    Chains: A, B
    EC Number: 3.2.1.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET16B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CELA
    Mutation: YES
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336
    Synonym: CELLULASE 12A

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1CBI2Ligand/IonCELLOBIOSE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CBI1Ligand/IonCELLOBIOSE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CBI1Ligand/IonCELLOBIOSE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:24 , TRP A:26 , TYR A:65 , LYS A:73 , GLU A:116 , TRP A:118 , GLU A:134 , TRP A:176 , TRP A:178 , GLU A:231 , HOH A:383 , HOH A:384 , HOH A:394 , HOH A:395 , HOH A:398 , HOH A:412BINDING SITE FOR RESIDUE CBI A 901
2AC2SOFTWAREASN B:24 , TRP B:26 , VAL B:62 , TYR B:65 , LYS B:73 , TRP B:118 , GLU B:134 , TRP B:176 , TRP B:178 , GLU B:231 , HOH B:265 , HOH B:268 , HOH B:270 , HOH B:344 , HOH B:465 , HOH B:467 , HOH B:468 , HOH B:469 , HOH B:472BINDING SITE FOR RESIDUE CBI B 902

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3VHP)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu A:85 -Pro A:86
2Leu B:85 -Pro B:86

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3VHP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3VHP)

(-) Exons   (0, 0)

(no "Exon" information available for 3VHP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:257
 aligned with Q60032_THEMT | Q60032 from UniProtKB/TrEMBL  Length:257

    Alignment length:257
                                                                                        61                                                                                                                                                                                                   
                                                                                      60 |                                                                                                                                                                                                   
                                    10        20        30        40        50        60 |      69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       
         Q60032_THEMT     1 MVLMTKPGTSDFVWNGIPLSMELNLWNIKEYSGSVAMKFDGEKITFDADIQNLSPKEPER-YVLGYPEFYYGYKPWENHTAEGSKLPVPVSSMKSFSVEVSFDIHHEPSLPLNFAMETWLTREKYQTEASIGDVEIMVWFYFNNLTPGGEKIEEFTIPFVLNGESVEGTWELWLAEWGWDYLAFRLKDPVKKGRVKFDVRHFLDAAGKALSSSARVKDFEDLYFTVWEIGTEFGSPETKSAQFGWKFENFSIDLEVR 256
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...eeeeeee..eeeeeee........eeeeeeee...eeeeeeeee.....hhhhh......eeeee.hhhhh.........ee...eeeeeeeeeeeeee.....eeeeeeeeee............eeeeeeeeee......eeeeeeeeeeee..eeeeeeeeeeeee...eeeeeee.....eeeeeeehhhhhhhhhhhh.......hhhh.ee.eeeee..........eeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vhp A   1 MVLMTKPGTSDFVWNGIPLSMELNLWNIKEYSGSVAMKFDGEKITFDADIQNLSPKEPERGGVLGYPEFYYGYKPWENHTAEGSKLPVPVSSMKSFSVEVSFDIHHEPSLPLNFAMETWLTREKYQTEASIGDVEIMVWFYFNNLTPGGEKIEEFTIPFVLNGESVEGTWELWLAEWGWDYLAFRLKDPVKKGRVKFDVRHFLDAAGKALSSSARVKDFEDLYFTVWEIGTEFGSPETKSAQFGWKFENFSIDLEVR 256
                                    10        20        30        40        50        60|       69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       
                                                                                      61A                                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:257
 aligned with Q60032_THEMT | Q60032 from UniProtKB/TrEMBL  Length:257

    Alignment length:257
                                                                                        61                                                                                                                                                                                                   
                                                                                      60 |                                                                                                                                                                                                   
                                    10        20        30        40        50        60 |      69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       
         Q60032_THEMT     1 MVLMTKPGTSDFVWNGIPLSMELNLWNIKEYSGSVAMKFDGEKITFDADIQNLSPKEPER-YVLGYPEFYYGYKPWENHTAEGSKLPVPVSSMKSFSVEVSFDIHHEPSLPLNFAMETWLTREKYQTEASIGDVEIMVWFYFNNLTPGGEKIEEFTIPFVLNGESVEGTWELWLAEWGWDYLAFRLKDPVKKGRVKFDVRHFLDAAGKALSSSARVKDFEDLYFTVWEIGTEFGSPETKSAQFGWKFENFSIDLEVR 256
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...eeeeeee..eeeeeee....eeeeeeeeeeee....eeeeeeeeeeee.hhhhh......eeeee.hhhhh.........ee...eeeeeeeeeeeeee.....eeeeeeeeee............eeeeeeeeee......eeeeeeeeeeee..eeeeeeeeeeeee...eeeeeee.....eeeeeeehhhhhhhhhhhhh......hhhh.ee.eeeee..........eeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vhp B   1 MVLMTKPGTSDFVWNGIPLSMELNLWNIKEYSGSVAMKFDGEKITFDADIQNLSPKEPERGGVLGYPEFYYGYKPWENHTAEGSKLPVPVSSMKSFSVEVSFDIHHEPSLPLNFAMETWLTREKYQTEASIGDVEIMVWFYFNNLTPGGEKIEEFTIPFVLNGESVEGTWELWLAEWGWDYLAFRLKDPVKKGRVKFDVRHFLDAAGKALSSSARVKDFEDLYFTVWEIGTEFGSPETKSAQFGWKFENFSIDLEVR 256
                                    10        20        30        40        50        60|       69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       
                                                                                      61A
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3VHP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3VHP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3VHP)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q60032_THEMT | Q60032)
molecular function
    GO:0008810    cellulase activity    Catalysis of the endohydrolysis of (1->4)-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0000272    polysaccharide catabolic process    The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.

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  3vhp
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  3.2.1.4
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q60032_THEMT | Q60032: 3amh 3amm 3amn 3amp 3amq 3vhn 3vho

(-) Related Entries Specified in the PDB File

3amh WILD-TYPE PROTEIN
3amn E134C MUTANT CRYSTAL SOAKED WITH CELLOBIOSE
3amq E134C MUTANT CELLOBIOSE CO-CRYSTAL
3vhn Y61G MUTANT CRYSTAL SOAKED WITH CELLOTETRAOSE
3vho Y61GG INSERTION MUTANT PROTEIN