Chain A from PDB Type:PROTEIN Length:211
aligned with SSB_DEIRA | Q9RY51 from UniProtKB/Swiss-Prot Length:301
Alignment length:231
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 202 212 222 232
SSB_DEIRA 3 RGMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQPELIQDAGGGVRMSGAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKELRKGDPVMIMGRLVNEGWTDKDGNKRNSTRVEATRVEALAR 233
SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeeeeeeeee....eeee.....eeeeeeeeeeeee..----.eeeeeeeeeeeehhhhhhhhhh......eeeeeeeeeeeeee.....eeeeeeeeeeeeee......eee.....eeee..eeeeeeeeee......ee.....eeeeeeeeeeeee-----..eeeeeeeeeeeehhhhhhh.......eeeeeeeee..-----------..eeeeeeeee... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --SSB PDB: A:5-110 UniProt: 5-110 ------------------SSB PDB: A:129-232 UniProt: 129-232 - PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3udg A 3 RGMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIG----ERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQPELIQDAGGGVRMSGAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENY-----QRQEKVHYIDATLWRDLAENMKELRKGDPVMIMGRLVNE-----------STRVEATRVEALAR 233
12 22 32 42 | 52 62 72 82 92 102 112 122 132 142 152 162 | 172 182 192 202 | - 222 232
42 47 164 170 208 220
Chain B from PDB Type:PROTEIN Length:214
aligned with SSB_DEIRA | Q9RY51 from UniProtKB/Swiss-Prot Length:301
Alignment length:230
13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223 233
SSB_DEIRA 4 GMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQPELIQDAGGGVRMSGAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKELRKGDPVMIMGRLVNEGWTDKDGNKRNSTRVEATRVEALAR 233
SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeeeeee....eeee.....eeeeeeeeeeee.------..eeeeeeeeeeehhhhhhhhhhh.....eeeeeeeeeeeeee.....eeeeeeeeeeeeee.......ee.......ee..eeeeeeeeee......ee.....eeeeeeeeeeeeee.....eeeeeeeeeeeeehhhhhhhh......eeeeeeeee.----------....eeeeeeeee... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -SSB PDB: B:5-110 UniProt: 5-110 ------------------SSB PDB: B:129-232 UniProt: 129-232 - PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3udg B 4 GMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRV------ERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQPELIQDAGGGVRMSGAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKELRKGDPVMIMGRLVN----------RNSTRVEATRVEALAR 233
13 23 33 | - | 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 | - | 223 233
40 47 207 218
Chain C from PDB Type:PROTEIN Length:214
aligned with SSB_DEIRA | Q9RY51 from UniProtKB/Swiss-Prot Length:301
Alignment length:231
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 202 212 222 232
SSB_DEIRA 3 RGMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQPELIQDAGGGVRMSGAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKELRKGDPVMIMGRLVNEGWTDKDGNKRNSTRVEATRVEALAR 233
SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeeeeeeeee....eeee.....eeeeeeeeeeeee.----..eeeeeeeeeeeehhhhhhhhh.......eeeeeeeeeeeeee.....eeeeeeeeeeeeee......eee.....eeee..eeeeeeeeee.....eee.....eeeeeeeeeeeeee.--..eeeeeeeeeeeeehhhhhh........eeeeeeeee..-----------..eeeeeeeee... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --SSB PDB: C:5-110 UniProt: 5-110 ------------------SSB PDB: C:129-232 UniProt: 129-232 - PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3udg C 3 RGMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVI----RERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQPELIQDAGGGVRMSGAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQD--GQRQEKVHYIDATLWRDLAENMKELRKGDPVMIMGRLVNE-----------STRVEATRVEALAR 233
12 22 32 |- | 52 62 72 82 92 102 112 122 132 142 152 162 | |172 182 192 202 | - 222 232
41 46 166 | 208 220
169
Chain D from PDB Type:DNA Length:5
3udg D 1 TTTTT 5
Chain E from PDB Type:DNA Length:5
3udg E 1 TTTTT 5
Chain F from PDB Type:DNA Length:4
3udg F 1 TTTT 5
||
3|
5
Chain G from PDB Type:DNA Length:5
3udg G 1 TTTTT 5
Chain H from PDB Type:DNA Length:3
3udg H 1 TTT 3
Chain I from PDB Type:DNA Length:3
3udg I 1 TTT 3
Legend: |
|
→ Mismatch |
(orange background) |
|
- |
→ Gap |
(green background, '-', border residues have a numbering label) |
|
|
→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
|
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
|
extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |