3UDG - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF DEINOCOCCUS RADIODURANS SSB BOUND TO SSDNA
• Keywords: SSB, OB FOLD, BETA-BARREL, SINGLE-STRANDED DNA-BINDING, DNA PROTEIN-DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3UDG	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	SINGLE-STRANDED DNA-BINDING PROTEIN	A	211	1647	0
2	Protein	SINGLE-STRANDED DNA-BINDING PROTEIN	B	214	1675	0
3	Protein	SINGLE-STRANDED DNA-BINDING PROTEIN	C	214	1675	0
4	Other macromolecule	5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP* P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'	D	5	100	0
5	Other macromolecule	5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP* P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'	E	5	100	0
6	Other macromolecule	5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP* P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'	F	4	80	0
7	Other macromolecule	5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP* P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'	G	5	91	0
8	Other macromolecule	5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP* P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'	H	3	60	0
9	Other macromolecule	5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP* P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'	I	3	60	0
10	Ligand	SINGLE-STRANDED DNA-BINDING PROTEIN	A	1	0	21
11	Ligand	SINGLE-STRANDED DNA-BINDING PROTEIN	B	2	0	42
12	Ligand	SINGLE-STRANDED DNA-BINDING PROTEIN	C	1	0	21
13	Water			106	0	106
total				774	5488	190

Proteins

Unit 1	ARG 3 GLY 4 MET 5 ASN 6 HIS 7 VAL 8 TYR 9 LEU 10 ILE 11 GLY 12 ALA 13 LEU 14 ALA 15 ARG 16 ASP 17 PRO 18 GLU 19 LEU 20 ARG 21 TYR 22 THR 23 GLY 24 ASN 25 GLY 26 MET 27 ALA 28 VAL 29 PHE 30 GLU 31 ALA 32 THR 33 VAL 34 ALA 35 GLY 36 GLU 37 ASP 38 ARG 39 VAL 40 ILE 41 GLY 42 GLU 47 ARG 48 ASN 49 LEU 50 PRO 51 TRP 52 TYR 53 HIS 54 ARG 55 VAL 56 SER 57 ILE 58 LEU 59 GLY 60 LYS 61 PRO 62 ALA 63 GLU 64 TRP 65 GLN 66 ALA 67 GLU 68 ARG 69 ASN 70 LEU 71 LYS 72 GLY 73 GLY 74 ASP 75 ALA 76 VAL 77 VAL 78 VAL 79 GLU 80 GLY 81 THR 82 LEU 83 GLU 84 TYR 85 ARG 86 GLN 87 TRP 88 GLU 89 ALA 90 PRO 91 GLU 92 GLY 93 GLY 94 LYS 95 ARG 96 SER 97 ALA 98 VAL 99 ASN 100 VAL 101 LYS 102 ALA 103 LEU 104 ARG 105 MET 106 GLU 107 GLN 108 LEU 109 GLY 110 THR 111 GLN 112 PRO 113 GLU 114 LEU 115 ILE 116 GLN 117 ASP 118 ALA 119 GLY 120 GLY 121 GLY 122 VAL 123 ARG 124 MET 125 SER 126 GLY 127 ALA 128 MET 129 ASN 130 GLU 131 VAL 132 LEU 133 VAL 134 LEU 135 GLY 136 ASN 137 VAL 138 THR 139 ARG 140 ASP 141 PRO 142 GLU 143 ILE 144 ARG 145 TYR 146 THR 147 PRO 148 ALA 149 GLY 150 ASP 151 ALA 152 VAL 153 LEU 154 SER 155 LEU 156 SER 157 ILE 158 ALA 159 VAL 160 ASN 161 GLU 162 ASN 163 TYR 164 GLN 170 ARG 171 GLN 172 GLU 173 LYS 174 VAL 175 HIS 176 TYR 177 ILE 178 ASP 179 ALA 180 THR 181 LEU 182 TRP 183 ARG 184 ASP 185 LEU 186 ALA 187 GLU 188 ASN 189 MET 190 LYS 191 GLU 192 LEU 193 ARG 194 LYS 195 GLY 196 ASP 197 PRO 198 VAL 199 MET 200 ILE 201 MET 202 GLY 203 ARG 204 LEU 205 VAL 206 ASN 207 GLU 208 SER 220 THR 221 ARG 222 VAL 223 GLU 224 ALA 225 THR 226 ARG 227 VAL 228 GLU 229 ALA 230 LEU 231 ALA 232 ARG 233
Unit 2	GLY 4 MET 5 ASN 6 HIS 7 VAL 8 TYR 9 LEU 10 ILE 11 GLY 12 ALA 13 LEU 14 ALA 15 ARG 16 ASP 17 PRO 18 GLU 19 LEU 20 ARG 21 TYR 22 THR 23 GLY 24 ASN 25 GLY 26 MET 27 ALA 28 VAL 29 PHE 30 GLU 31 ALA 32 THR 33 VAL 34 ALA 35 GLY 36 GLU 37 ASP 38 ARG 39 VAL 40 GLU 47 ARG 48 ASN 49 LEU 50 PRO 51 TRP 52 TYR 53 HIS 54 ARG 55 VAL 56 SER 57 ILE 58 LEU 59 GLY 60 LYS 61 PRO 62 ALA 63 GLU 64 TRP 65 GLN 66 ALA 67 GLU 68 ARG 69 ASN 70 LEU 71 LYS 72 GLY 73 GLY 74 ASP 75 ALA 76 VAL 77 VAL 78 VAL 79 GLU 80 GLY 81 THR 82 LEU 83 GLU 84 TYR 85 ARG 86 GLN 87 TRP 88 GLU 89 ALA 90 PRO 91 GLU 92 GLY 93 GLY 94 LYS 95 ARG 96 SER 97 ALA 98 VAL 99 ASN 100 VAL 101 LYS 102 ALA 103 LEU 104 ARG 105 MET 106 GLU 107 GLN 108 LEU 109 GLY 110 THR 111 GLN 112 PRO 113 GLU 114 LEU 115 ILE 116 GLN 117 ASP 118 ALA 119 GLY 120 GLY 121 GLY 122 VAL 123 ARG 124 MET 125 SER 126 GLY 127 ALA 128 MET 129 ASN 130 GLU 131 VAL 132 LEU 133 VAL 134 LEU 135 GLY 136 ASN 137 VAL 138 THR 139 ARG 140 ASP 141 PRO 142 GLU 143 ILE 144 ARG 145 TYR 146 THR 147 PRO 148 ALA 149 GLY 150 ASP 151 ALA 152 VAL 153 LEU 154 SER 155 LEU 156 SER 157 ILE 158 ALA 159 VAL 160 ASN 161 GLU 162 ASN 163 TYR 164 GLN 165 ASP 166 ARG 167 GLN 168 GLY 169 GLN 170 ARG 171 GLN 172 GLU 173 LYS 174 VAL 175 HIS 176 TYR 177 ILE 178 ASP 179 ALA 180 THR 181 LEU 182 TRP 183 ARG 184 ASP 185 LEU 186 ALA 187 GLU 188 ASN 189 MET 190 LYS 191 GLU 192 LEU 193 ARG 194 LYS 195 GLY 196 ASP 197 PRO 198 VAL 199 MET 200 ILE 201 MET 202 GLY 203 ARG 204 LEU 205 VAL 206 ASN 207 ARG 218 ASN 219 SER 220 THR 221 ARG 222 VAL 223 GLU 224 ALA 225 THR 226 ARG 227 VAL 228 GLU 229 ALA 230 LEU 231 ALA 232 ARG 233
Unit 3	ARG 3 GLY 4 MET 5 ASN 6 HIS 7 VAL 8 TYR 9 LEU 10 ILE 11 GLY 12 ALA 13 LEU 14 ALA 15 ARG 16 ASP 17 PRO 18 GLU 19 LEU 20 ARG 21 TYR 22 THR 23 GLY 24 ASN 25 GLY 26 MET 27 ALA 28 VAL 29 PHE 30 GLU 31 ALA 32 THR 33 VAL 34 ALA 35 GLY 36 GLU 37 ASP 38 ARG 39 VAL 40 ILE 41 ARG 46 GLU 47 ARG 48 ASN 49 LEU 50 PRO 51 TRP 52 TYR 53 HIS 54 ARG 55 VAL 56 SER 57 ILE 58 LEU 59 GLY 60 LYS 61 PRO 62 ALA 63 GLU 64 TRP 65 GLN 66 ALA 67 GLU 68 ARG 69 ASN 70 LEU 71 LYS 72 GLY 73 GLY 74 ASP 75 ALA 76 VAL 77 VAL 78 VAL 79 GLU 80 GLY 81 THR 82 LEU 83 GLU 84 TYR 85 ARG 86 GLN 87 TRP 88 GLU 89 ALA 90 PRO 91 GLU 92 GLY 93 GLY 94 LYS 95 ARG 96 SER 97 ALA 98 VAL 99 ASN 100 VAL 101 LYS 102 ALA 103 LEU 104 ARG 105 MET 106 GLU 107 GLN 108 LEU 109 GLY 110 THR 111 GLN 112 PRO 113 GLU 114 LEU 115 ILE 116 GLN 117 ASP 118 ALA 119 GLY 120 GLY 121 GLY 122 VAL 123 ARG 124 MET 125 SER 126 GLY 127 ALA 128 MET 129 ASN 130 GLU 131 VAL 132 LEU 133 VAL 134 LEU 135 GLY 136 ASN 137 VAL 138 THR 139 ARG 140 ASP 141 PRO 142 GLU 143 ILE 144 ARG 145 TYR 146 THR 147 PRO 148 ALA 149 GLY 150 ASP 151 ALA 152 VAL 153 LEU 154 SER 155 LEU 156 SER 157 ILE 158 ALA 159 VAL 160 ASN 161 GLU 162 ASN 163 TYR 164 GLN 165 ASP 166 GLY 169 GLN 170 ARG 171 GLN 172 GLU 173 LYS 174 VAL 175 HIS 176 TYR 177 ILE 178 ASP 179 ALA 180 THR 181 LEU 182 TRP 183 ARG 184 ASP 185 LEU 186 ALA 187 GLU 188 ASN 189 MET 190 LYS 191 GLU 192 LEU 193 ARG 194 LYS 195 GLY 196 ASP 197 PRO 198 VAL 199 MET 200 ILE 201 MET 202 GLY 203 ARG 204 LEU 205 VAL 206 ASN 207 GLU 208 SER 220 THR 221 ARG 222 VAL 223 GLU 224 ALA 225 THR 226 ARG 227 VAL 228 GLU 229 ALA 230 LEU 231 ALA 232 ARG 233

Other macromolecules

Unit 4	DT 1 DT 2 DT 3 DT 4 DT 5
Unit 5	DT 1 DT 2 DT 3 DT 4 DT 5
Unit 6	DT 1 DT 2 DT 3 DT 5
Unit 7	DT 1 DT 2 DT 3 DT 4 DT 5
Unit 8	DT 1 DT 2 DT 3
Unit 9	DT 1 DT 2 DT 3

Ligands

Unit 10	TMP 302
Unit 11	TMP 302 TMP 303
Unit 12	TMP 302