Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF HUMAN LEUKOTRIENE A4 HYDROLASE IN COMPLEX WITH INHIBITOR SC57461A
 
Authors :  D. Niegowski, M. Thunnissen, F. Tholander, A. Rinaldo-Matthis, A. Mur J. Z. Haeggstrom
Date :  20 Oct 11  (Deposition) - 24 Oct 12  (Release) - 24 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.25
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  U. Olsson, D. Niegowski, A. Stsiapanava, M. Thunnissen, J. Z. Haeggstrom, A. Rinaldo-Matthis
Structure Of Human Leukotriene A4 Hydrolase In Complex With Inhibitor Sc57461A
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LEUKOTRIENE A-4 HYDROLASE
    ChainsA
    EC Number3.3.2.6
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPT3
    Expression System StrainJM101
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneLTA4H, LTA4
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymLTA-4 HYDROLASE, LEUKOTRIENE A(4) HYDROLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 17)

Asymmetric/Biological Unit (7, 17)
No.NameCountTypeFull Name
128P1Ligand/IonN-[3-(4-BENZYLPHENOXY)PROPYL]-N-METHYL-BETA-ALANINE
2ACT1Ligand/IonACETATE ION
3CL2Ligand/IonCHLORIDE ION
4GOL1Ligand/IonGLYCEROL
5IMD3Ligand/IonIMIDAZOLE
6YB8Ligand/IonYTTERBIUM (III) ION
7ZN1Ligand/IonZINC ION

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:1295 , HIS A:1299 , GLU A:1318 , 28P A:7001BINDING SITE FOR RESIDUE ZN A 2001
02AC2SOFTWAREACT A:1 , ASP A:1047 , ASP A:1481 , HOH A:8062 , HOH A:8066 , HOH A:8118BINDING SITE FOR RESIDUE YB A 2002
03AC3SOFTWAREASP A:1058 , ARG A:1078 , SER A:1084BINDING SITE FOR RESIDUE CL A 2007
04AC4SOFTWAREPRO A:1216 , PRO A:1513 , GLY A:1515BINDING SITE FOR RESIDUE CL A 2008
05AC5SOFTWAREGLY A:1344 , GLY A:1347 , GLU A:1348 , GLU A:1501 , ALA A:1504 , GLN A:1508BINDING SITE FOR RESIDUE IMD A 2009
06AC6SOFTWARESER A:1288 , LEU A:1289 , SER A:1496 , HIS A:1497 , ASN A:1500 , ASN A:1531 , HOH A:8436BINDING SITE FOR RESIDUE IMD A 2010
07AC7SOFTWAREPHE A:1029 , ARG A:1032 , TRP A:1117 , LEU A:1118 , PRO A:1120 , HOH A:8236 , HOH A:8548 , HOH A:8552BINDING SITE FOR RESIDUE GOL A 2011
08AC8SOFTWAREGLN A:1136 , TYR A:1267 , GLY A:1269 , MET A:1270 , GLU A:1271 , HIS A:1295 , GLU A:1296 , HIS A:1299 , TRP A:1311 , PHE A:1314 , GLU A:1318 , VAL A:1367 , PRO A:1374 , ALA A:1377 , TYR A:1378 , PRO A:1382 , TYR A:1383 , ZN A:2001BINDING SITE FOR RESIDUE 28P A 7001
09AC9SOFTWAREASP A:1047 , ASN A:1048 , ARG A:1174 , LYS A:1479 , ASP A:1481 , YB A:2002 , HOH A:8010 , HOH A:8062 , HOH A:8118 , HOH A:8615BINDING SITE FOR RESIDUE ACT A 1
10BC1SOFTWAREYB A:2 , ASP A:1426 , HOH A:8913 , HOH A:8914 , HOH A:8915 , HOH A:8920BINDING SITE FOR RESIDUE YB A 1611
11BC2SOFTWAREYB A:7 , ASP A:1426 , ASP A:1610 , YB A:1611 , HOH A:8908 , HOH A:8914 , HOH A:8915 , HOH A:8929BINDING SITE FOR RESIDUE YB A 2
12BC3SOFTWAREASP A:1175 , HOH A:8925 , HOH A:8927 , HOH A:8928BINDING SITE FOR RESIDUE YB A 3
13BC4SOFTWAREIMD A:186 , ARG A:1024 , GLU A:1182 , HOH A:8226 , HOH A:8421BINDING SITE FOR RESIDUE YB A 4
14BC5SOFTWAREGLU A:1070 , HOH A:8727BINDING SITE FOR RESIDUE YB A 5
15BC6SOFTWAREGLU A:1182 , GLU A:1590BINDING SITE FOR RESIDUE YB A 6
16BC7SOFTWAREYB A:2 , ASP A:1426 , ASP A:1610 , HOH A:8908 , HOH A:8914BINDING SITE FOR RESIDUE YB A 7
17BC8SOFTWAREYB A:4 , ARG A:1024 , CYS A:1025 , GLU A:1159 , ILE A:1188 , HOH A:8226 , HOH A:8380BINDING SITE FOR RESIDUE IMD A 186

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3U9W)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gln A:1136 -Ala A:1137
2Ala A:1510 -Pro A:1511

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 1)

Asymmetric/Biological Unit (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_051570Y131HLKHA4_HUMANPolymorphism45630737AY1130H

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZINC_PROTEASEPS00142 Neutral zinc metallopeptidases, zinc-binding region signature.LKHA4_HUMAN293-302  1A:1292-1301

(-) Exons   (19, 19)

Asymmetric/Biological Unit (19, 19)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2ENST000002287402ENSE00000817988chr12:96429365-96429139227LKHA4_HUMAN1-53531A:1003-105250
1.3ENST000002287403ENSE00000753490chr12:96422963-96422833131LKHA4_HUMAN54-97441A:1053-109644
1.4ENST000002287404ENSE00000753489chr12:96421342-96421222121LKHA4_HUMAN97-137411A:1096-113641
1.5ENST000002287405ENSE00000753488chr12:96418325-9641825769LKHA4_HUMAN138-160231A:1137-115923
1.6ENST000002287406ENSE00000753487chr12:96416029-96415925105LKHA4_HUMAN161-195351A:1160-119435
1.7ENST000002287407ENSE00000753486chr12:96414915-9641486353LKHA4_HUMAN196-213181A:1195-121218
1.9ENST000002287409ENSE00000753485chr12:96413018-9641294673LKHA4_HUMAN213-237251A:1212-123625
1.10ENST0000022874010ENSE00000817987chr12:96412681-96412541141LKHA4_HUMAN238-284471A:1237-128347
1.11ENST0000022874011ENSE00000994202chr12:96411358-9641133524LKHA4_HUMAN285-29281A:1284-12918
1.12ENST0000022874012ENSE00000753483chr12:96410892-9641082271LKHA4_HUMAN293-316241A:1292-131524
1.13ENST0000022874013ENSE00000753482chr12:96409472-96409361112LKHA4_HUMAN316-353381A:1315-135238
1.14ENST0000022874014ENSE00000753481chr12:96408777-96408633145LKHA4_HUMAN354-402491A:1353-140149
1.15ENST0000022874015ENSE00000753480chr12:96407631-96407528104LKHA4_HUMAN402-436351A:1401-143535
1.16ENST0000022874016ENSE00000753478chr12:96407036-9640696671LKHA4_HUMAN437-460241A:1436-145924
1.17ENST0000022874017ENSE00000753477chr12:96402926-9640287255LKHA4_HUMAN460-478191A:1459-147719
1.18ENST0000022874018ENSE00000753476chr12:96400187-9640009296LKHA4_HUMAN479-510321A:1478-150932
1.19ENST0000022874019ENSE00000753475chr12:96397698-9639761683LKHA4_HUMAN511-538281A:1510-153728
1.20ENST0000022874020ENSE00001627094chr12:96396842-96396738105LKHA4_HUMAN538-573361A:1537-157236
1.21ENST0000022874021ENSE00001640843chr12:96394884-96394611274LKHA4_HUMAN573-611391A:1572-161039

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:608
 aligned with LKHA4_HUMAN | P09960 from UniProtKB/Swiss-Prot  Length:611

    Alignment length:608
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603        
         LKHA4_HUMAN      4 IVDTCSLASPASVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGERQSYKGSPMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPEQTSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVGALESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLLAGDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRWITAKEDDLNSFNATDLKDLSSHQLNEFLAQTLQRAPLPLGHIKRMQEVYNFNAINNSEIRFRWLRLCIQSKWEDAIPLALKMATEQGRMKFTRPLFKDLAAFDKSHDQAVRTYQEHKASMHPVTAMLVGKDLKVD  611
               SCOP domains d3u9wa1 A:1003-1208 Leukotriene A4 hydrolase N-terminal domain                                                                                                                                                d3u9wa2 A:1209-1460 Leukotriene A4 hydrolase catalytic domain                                                                                                                                                                                               d3u9wa3 A:1461-1610 Leukotriene A4 hydrolase C-terminal domain                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeeeeeeee....eeeeeeeeeeee....eeeeeeee...eeeeeee..ee..eee...hhhhheeeeeeeeeee....eeeeeeeee.......eeeehhhhh......eeee.....hhhhh..........eeeeeeeeee...eeee..eeeeeee......eeeeeeeeeeeehhhhh.eeee..eeeeee..eeeeehhhhhhhhhhhh.hhhhhhhhhhhhhh.......eeee........ee....eeee.hhhh......hhhhhhhhhh......eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh........hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeehhhhhhhhhhhhh..hhhhhhh.hhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ZINC_PROTE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: A:1003-1052 UniProt: 1-53          Exon 1.3  PDB: A:1053-1096 UniProt: 54-97   ----------------------------------------Exon 1.5               Exon 1.6  PDB: A:1160-1194         Exon 1.7          ------------------------Exon 1.10  PDB: A:1237-1283 UniProt: 238-284   1.11    Exon 1.12               -------------------------------------Exon 1.14  PDB: A:1353-1401 UniProt: 354-402     ----------------------------------Exon 1.16               ------------------Exon 1.18  PDB: A:1478-1509     Exon 1.19  PDB: A:1510-1537 ----------------------------------Exon 1.21  PDB: A:1572-1610             Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------------Exon 1.4  PDB: A:1096-1136               ---------------------------------------------------------------------------Exon 1.9  PDB: A:1212-123------------------------------------------------------------------------------Exon 1.13  PDB: A:1315-1352           ------------------------------------------------Exon 1.15  PDB: A:1401-1435        -----------------------Exon 1.17          -----------------------------------------------------------Exon 1.20  PDB: A:1537-1572         -------------------------------------- Transcript 1 (2)
                3u9w A 1003 IVDTCSLASPASVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGERQSYKGSPMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPEQTSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVGALESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLLAGDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRWITAKEDDLNSFNATDLKDLSSHQLNEFLAQTLQRAPLPLGHIKRMQEVYNFNAINNSEIRFRWLRLCIQSKWEDAIPLALKMATEQGRMKFTRPLFKDLAAFDKSHDQAVRTYQEHKASMHPVTAMLVGKDLKVD 1610
                                  1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232      1242      1252      1262      1272      1282      1292      1302      1312      1322      1332      1342      1352      1362      1372      1382      1392      1402      1412      1422      1432      1442      1452      1462      1472      1482      1492      1502      1512      1522      1532      1542      1552      1562      1572      1582      1592      1602        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 3)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3U9W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3U9W)

(-) Gene Ontology  (25, 25)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (LKHA4_HUMAN | P09960)
molecular function
    GO:0004177    aminopeptidase activity    Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain.
    GO:0004301    epoxide hydrolase activity    Catalysis of the reaction: an epoxide + H2O = a glycol.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0004463    leukotriene-A4 hydrolase activity    Catalysis of the reaction: H(2)O + leukotriene A(4) = leukotriene B(4).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0070006    metalloaminopeptidase activity    Catalysis of the hydrolysis of N-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
    GO:0008237    metallopeptidase activity    Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0042277    peptide binding    Interacting selectively and non-covalently with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0060509    Type I pneumocyte differentiation    The process in which a relatively unspecialized cell acquires specialized features of a Type I pneumocyte. A type I pneumocyte is a flattened cell with greatly attenuated cytoplasm and a paucity of organelles.
    GO:0006954    inflammatory response    The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
    GO:0019370    leukotriene biosynthetic process    The chemical reactions and pathways resulting in the formation of leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid.
    GO:0006691    leukotriene metabolic process    The chemical reactions and pathways involving leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid.
    GO:0043171    peptide catabolic process    The chemical reactions and pathways resulting in the breakdown of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0043434    response to peptide hormone    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals.
    GO:0010043    response to zinc ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    28P  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ACT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    IMD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    YB  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ZN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ala A:1510 - Pro A:1511   [ RasMol ]  
    Gln A:1136 - Ala A:1137   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3u9w
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  LKHA4_HUMAN | P09960
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  3.3.2.6
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  LKHA4_HUMAN | P09960
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LKHA4_HUMAN | P099601gw6 1h19 1hs6 1sqm 2r59 2vj8 3b7r 3b7s 3b7t 3b7u 3cho 3chp 3chq 3chr 3chs 3fh5 3fh7 3fh8 3fhe 3fts 3ftu 3ftv 3ftw 3ftx 3fty 3ftz 3fu0 3fu3 3fu5 3fu6 3fud 3fue 3fuf 3fuh 3fui 3fuj 3fuk 3ful 3fum 3fun 4dpr 4l2l 4mkt 4ms6 4r7l 4rsy 4rvb 5aen 5bpp 5fwq 5n3w

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3U9W)