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(-) Description

Title :  APO STRUCTURE OF HUMAN LEUKOTRIENE A4 HYDROLASE
 
Authors :  S. K. Wittmann, L. Kalinowsky, J. Kramer, R. Bloecher, D. Steinhilber, D. Pogoryelov, E. Proschak, J. Heering
Date :  19 Feb 16  (Deposition) - 05 Oct 16  (Release) - 09 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Leukotriene (Lt) A4 Hydrolase/Aminopeptidase, Lta4H (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. K. Wittmann, L. Kalinowsky, J. S. Kramer, R. Bloecher, S. Knapp, D. Steinhilber, D. Pogoryelov, E. Proschak, J. Heering
Thermodynamic Properties Of Leukotriene A4 Hydrolase Inhibitors.
Bioorg. Med. Chem. V. 24 5243 2016
PubMed-ID: 27651294  |  Reference-DOI: 10.1016/J.BMC.2016.08.047

(-) Compounds

Molecule 1 - HUMAN LEUKOTRIENE A4 HYDROLASE
    Chains: A
    EC Number: 3.3.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET 24
    Expression System Vector Type: PLASMID
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: LTA-4 HYDROLASE, LEUKOTRIENE A(4) HYDROLASE, HUMAN LEUKOTRIENE A4 HYDROLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric/Biological Unit (4, 11)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2IMD3Ligand/IonIMIDAZOLE
3YB6Ligand/IonYTTERBIUM (III) ION
4ZN1Ligand/IonZINC ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:46 , ASP A:175 , HOH A:2031 , HOH A:2032BINDING SITE FOR RESIDUE YB A2612
02AC2SOFTWAREGLY A:269 , GLU A:271 , HIS A:295 , GLU A:296 , HIS A:299 , GLU A:318 , TYR A:383 , ZN A:1612 , HOH A:2114BINDING SITE FOR RESIDUE ACT A1611
03AC3SOFTWAREHIS A:295 , HIS A:299 , GLU A:318 , TYR A:383 , ACT A:1611BINDING SITE FOR RESIDUE ZN A1612
04AC4SOFTWAREASP A:47 , ASP A:481 , HOH A:2036 , HOH A:2330 , HOH A:2331 , HOH A:2406 , HOH A:2407BINDING SITE FOR RESIDUE YB A1613
05AC5SOFTWAREGLU A:70 , GLU A:121BINDING SITE FOR RESIDUE YB A1614
06AC6SOFTWAREASP A:422 , ASP A:426 , HOH A:2294BINDING SITE FOR RESIDUE YB A1615
07AC7SOFTWAREASP A:47 , ASP A:481 , HOH A:2036 , HOH A:2330 , HOH A:2331 , HOH A:2406 , HOH A:2407BINDING SITE FOR RESIDUE YB A1616
08AC8SOFTWAREGLU A:46 , ASP A:175 , HOH A:2032BINDING SITE FOR RESIDUE YB A1617
09AC9SOFTWAREGLN A:136 , TYR A:267 , PHE A:314 , PRO A:374 , ASP A:375 , HOH A:2265BINDING SITE FOR RESIDUE IMD A1618
10BC1SOFTWARETRP A:311 , PHE A:314 , ALA A:377 , HOH A:2265BINDING SITE FOR RESIDUE IMD A1619
11BC2SOFTWAREGLY A:344 , GLY A:347 , GLU A:348 , GLU A:501 , ALA A:504 , GLN A:508BINDING SITE FOR RESIDUE IMD A1620

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FWQ)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gln A:136 -Ala A:137
2Ala A:510 -Pro A:511

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FWQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FWQ)

(-) Exons   (0, 0)

(no "Exon" information available for 5FWQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:607
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeeeeeeeeee....eeeeeeeeeeee....eeeeeeee..eeeeeeee..ee..eee...hhhhheeeeeeeeeee....eeeeeeeeee......eeeehhhhh......eeee.....hhhhh..........eeeeeeeeee...eeee..eeeeeeee..eeeeeeeeeeeeeeehhhhh.eeee..eeeeee..eeeeehhhhhhhhhhhh.hhhhhhhhhhhhhh.......eeee........ee....eeee.hhhh......hhhhhhhhhh.......ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh........hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhh..hhhhhh..hhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fwq A   4 VDTCSLASPASVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGERQSYKGSPMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPEQTSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVGALESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGGPYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLLAGDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRWITAKEDDLNSFNATDLKDLSSHQLNEFLAQTLQRAPLPLGHIKRMQEVYNFNAINNSEIRFRWLRLCIQSKWEDAIPLALKMATEQGRMKFTRPLFKDLAAFDKSHDQAVRTYQEHKASMHPVTAMLVGKDLKVD 610
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FWQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FWQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FWQ)

(-) Gene Ontology  (25, 25)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:510 - Pro A:511   [ RasMol ]  
    Gln A:136 - Ala A:137   [ RasMol ]  
 

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  5fwq
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  LKHA4_HUMAN | P09960
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  3.3.2.6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LKHA4_HUMAN | P09960: 1gw6 1h19 1hs6 1sqm 2r59 2vj8 3b7r 3b7s 3b7t 3b7u 3cho 3chp 3chq 3chr 3chs 3fh5 3fh7 3fh8 3fhe 3fts 3ftu 3ftv 3ftw 3ftx 3fty 3ftz 3fu0 3fu3 3fu5 3fu6 3fud 3fue 3fuf 3fuh 3fui 3fuj 3fuk 3ful 3fum 3fun 3u9w 4dpr 4l2l 4mkt 4ms6 4r7l 4rsy 4rvb 5aen 5bpp 5n3w

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5FWQ)