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(-) Description

Title :  CRYSTAL STRUCTURE OF 3-KETOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (FABG)(F187A) FROM VIBRIO CHOLERAE
 
Authors :  J. Hou, M. Chruszcz, H. Zheng, D. R. Cooper, T. Osinski, I. Shumilin, W. F. Anderson, W. Minor, Center For Structural Genomics Of Infe Diseases (Csgid)
Date :  27 Sep 11  (Deposition) - 19 Oct 11  (Release) - 19 Oct 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,F  (2x)
Biol. Unit 2:  B,E  (2x)
Biol. Unit 3:  C,D  (2x)
Keywords :  Vibrio Cholerae, 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase, Fabg, Oxidoreductase, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  

PubMed: search

(-) Compounds

Molecule 1 - 3-OXOACYL-[ACYL-CARRIER PROTEIN] REDUCTASE
    Chains: A, B, C, D, E, F
    EC Number: 1.1.1.100
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21-CODONPLUS(DE3)-RIPL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: VC2021, VCD_002346
    Mutation: YES
    Organism Scientific: VIBRIO CHOLERAE
    Organism Taxid: 593588
    Strain: MJ-1236

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (2x): A    F
Biological Unit 2 (2x):  B  E 
Biological Unit 3 (2x):   CD  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 73)

Asymmetric Unit (3, 73)
No.NameCountTypeFull Name
1GOL7Ligand/IonGLYCEROL
2SO419Ligand/IonSULFATE ION
3UNX47Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 1 (3, 52)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL
2SO412Ligand/IonSULFATE ION
3UNX34Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 2 (3, 52)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL
2SO410Ligand/IonSULFATE ION
3UNX36Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 3 (3, 42)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2SO416Ligand/IonSULFATE ION
3UNX24Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (26, 26)

Asymmetric Unit (26, 26)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:19 , GLY A:20 , LYS A:23 , HOH A:504BINDING SITE FOR RESIDUE SO4 A 249
02AC2SOFTWAREGLY A:82 , GLY A:83 , LYS A:132 , HOH A:304 , HOH A:531BINDING SITE FOR RESIDUE SO4 A 250
03AC3SOFTWARELYS A:103 , GLU A:104 , LYS A:123 , HOH A:891BINDING SITE FOR RESIDUE SO4 A 251
04AC4SOFTWAREGLY A:16 , ALA A:17 , SER A:18 , ARG A:19 , ALA A:40 , THR A:41BINDING SITE FOR RESIDUE GOL A 252
05AC5SOFTWAREARG B:19 , GLY B:20 , LYS B:23 , HOH B:560BINDING SITE FOR RESIDUE SO4 B 251
06AC6SOFTWAREGLY B:82 , GLY B:83 , LYS B:132 , HOH B:362 , HOH B:384BINDING SITE FOR RESIDUE SO4 B 252
07AC7SOFTWARESER B:18 , ARG B:19 , ALA B:40 , THR B:41 , HOH B:957BINDING SITE FOR RESIDUE SO4 B 253
08AC8SOFTWAREGLY B:145 , THR B:146 , LYS B:167 , HOH B:257 , HOH B:733BINDING SITE FOR RESIDUE GOL B 254
09AC9SOFTWAREMET C:1 , SER C:2 , ARG C:32 , MET D:1 , SER D:2 , ARG D:32BINDING SITE FOR RESIDUE SO4 C 249
10BC1SOFTWARELYS C:103 , GLU C:104 , LYS C:123 , HOH C:266BINDING SITE FOR RESIDUE SO4 C 250
11BC2SOFTWAREARG C:19 , GLY C:20 , LYS C:23 , HOH C:693BINDING SITE FOR RESIDUE SO4 C 251
12BC3SOFTWAREGLY C:83 , LYS C:132 , HOH C:263 , HOH C:342BINDING SITE FOR RESIDUE SO4 C 252
13BC4SOFTWAREILE C:93 , ARG C:95BINDING SITE FOR RESIDUE SO4 C 253
14BC5SOFTWAREGLY C:16 , ALA C:17 , SER C:18 , ARG C:19 , ALA C:40 , THR C:41 , HOH C:284BINDING SITE FOR RESIDUE GOL C 254
15BC6SOFTWARELYS D:103 , GLU D:104 , HOH D:304BINDING SITE FOR RESIDUE SO4 D 249
16BC7SOFTWAREARG D:19 , GLY D:20 , LYS D:23 , HOH D:274BINDING SITE FOR RESIDUE SO4 D 250
17BC8SOFTWAREGLY D:82 , GLY D:83 , LYS D:132 , HOH D:277BINDING SITE FOR RESIDUE SO4 D 251
18BC9SOFTWARESER B:2 , ARG B:32 , SER E:2 , ARG E:32BINDING SITE FOR RESIDUE SO4 E 249
19CC1SOFTWAREARG E:19 , GLY E:20 , LYS E:23 , HOH E:633BINDING SITE FOR RESIDUE SO4 E 250
20CC2SOFTWAREGLY E:16 , ALA E:17 , SER E:18 , ARG E:19 , ALA E:40 , THR E:41BINDING SITE FOR RESIDUE GOL E 251
21CC3SOFTWAREGLY E:145 , ILE E:163 , LYS E:167 , HOH E:815BINDING SITE FOR RESIDUE GOL E 252
22CC4SOFTWARELYS F:103 , GLU F:104BINDING SITE FOR RESIDUE SO4 F 249
23CC5SOFTWAREARG F:19 , GLY F:20 , LYS F:23 , HOH F:610BINDING SITE FOR RESIDUE SO4 F 250
24CC6SOFTWARESER A:2 , ARG A:32 , SER F:2 , ARG F:32BINDING SITE FOR RESIDUE SO4 F 251
25CC7SOFTWAREGLY F:16 , ALA F:17 , SER F:18 , ARG F:19 , THR F:39 , ALA F:40 , THR F:41 , HOH F:277 , HOH F:884BINDING SITE FOR RESIDUE GOL F 252
26CC8SOFTWAREARG F:19 , GLY F:20 , ILE F:21 , GLY F:22 , ASN F:90 , THR F:190 , HOH F:285BINDING SITE FOR RESIDUE GOL F 253

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3TZH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3TZH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3TZH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3TZH)

(-) Exons   (0, 0)

(no "Exon" information available for 3TZH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains d3tzha_ A: automated matches                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhh.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tzh A   2 SQFMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGAIETDMTKALNDEQRTATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGGMYMI 248
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       


Chain B from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains d3tzhb_ B: automated matches                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhh.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tzh B   2 SQFMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGAIETDMTKALNDEQRTATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGGMYMI 248
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       


Chain C from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains d3tzhc_ C: automated matches                                                                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhh.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tzh C   1 MSQFMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGAIETDMTKALNDEQRTATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGGMYMI 248
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240        


Chain D from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains d3tzhd_ D: automated matches                                                                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhh.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tzh D   1 MSQFMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGAIETDMTKALNDEQRTATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGGMYMI 248
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240        


Chain E from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains d3tzhe_ E: automated matches                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhh.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tzh E   2 SQFMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGAIETDMTKALNDEQRTATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGGMYMI 248
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       


Chain F from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains d3tzhf_ F: automated matches                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhh.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tzh F   2 SQFMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGAIETDMTKALNDEQRTATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGGMYMI 248
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3TZH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3TZH)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3TZH)

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  3tzh
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