3RTL - JenaLib

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HOH A:11 , HOH A:51 , GLU A:354 , SER A:361 , MET A:362 , PHE A:366 , TRP A:392 , VAL A:433 , ILE A:438 , TYR A:440 , TYR A:444 , VAL A:446 , HOH A:470 , HOH A:480 , HEM B:200 , HOH B:300 , TYR B:391 , ILE B:438	BINDING SITE FOR RESIDUE HEM A 200
02	AC2	SOFTWARE	HOH A:87 , HOH A:229 , GLU A:354 , HOH A:614 , HOH B:503 , HOH B:606	BINDING SITE FOR RESIDUE MG A 50
03	AC3	SOFTWARE	HEM A:200 , HOH A:332 , THR A:365 , PHE A:366 , ASN A:388 , HOH B:5 , HOH B:115 , HOH B:320 , GLU B:354 , SER B:361 , MET B:362 , PHE B:366 , TYR B:391 , TRP B:392 , VAL B:433 , VAL B:435 , ILE B:438 , TYR B:440 , TYR B:444 , VAL B:446 , HOH B:479 , HOH B:626	BINDING SITE FOR RESIDUE HEM B 200
04	AC4	SOFTWARE	HOH A:623 , HOH A:625 , GLU B:354 , HOH B:622 , HOH B:624 , HOH B:626	BINDING SITE FOR RESIDUE MG B 1
05	AC5	SOFTWARE	ASP B:428 , HOH B:504 , HOH B:615 , HOH C:29 , ASP C:428 , HOH C:605	BINDING SITE FOR RESIDUE MG B 56
06	AC6	SOFTWARE	HOH C:1 , HOH C:66 , HOH C:188 , GLU C:354 , SER C:361 , MET C:362 , PHE C:366 , TYR C:391 , TRP C:392 , VAL C:433 , VAL C:435 , TYR C:440 , TYR C:444 , VAL C:446 , HOH C:491 , HOH C:532 , HEM D:200 , THR D:365 , PHE D:366 , HOH D:483	BINDING SITE FOR RESIDUE HEM C 200
07	AC7	SOFTWARE	GLU C:354 , HOH C:510 , HOH C:595 , HOH C:617 , HOH D:486 , HOH D:608	BINDING SITE FOR RESIDUE MG C 18
08	AC8	SOFTWARE	HEM C:200 , THR C:365 , ASN C:388 , TYR C:391 , ILE C:438 , HOH C:460 , HOH C:467 , HOH D:9 , HOH D:65 , GLU D:354 , SER D:361 , MET D:362 , PHE D:366 , TRP D:392 , VAL D:433 , VAL D:435 , ILE D:438 , TYR D:440 , TYR D:444 , VAL D:446	BINDING SITE FOR RESIDUE HEM D 200
09	AC9	SOFTWARE	HOH C:127 , HOH C:607 , HOH D:22 , GLU D:354 , HOH D:602 , HOH D:616	BINDING SITE FOR RESIDUE MG D 4
10	BC1	SOFTWARE	LYS C:379 , LYS C:380 , THR D:404 , LYS D:407 , ARG D:414	BINDING SITE FOR RESIDUE CL D 1

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NEAT	PS50978	NEAT domain profile.	ISDB_STAAN	144-269 341-458	4	- A:341-452 B:341-458 C:341-458 D:341-456

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NEAT	PS50978	NEAT domain profile.	ISDB_STAAN	144-269 341-458	1	- A:341-452 - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NEAT	PS50978	NEAT domain profile.	ISDB_STAAN	144-269 341-458	1	- - B:341-458 - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NEAT	PS50978	NEAT domain profile.	ISDB_STAAN	144-269 341-458	1	- - - C:341-458 -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NEAT	PS50978	NEAT domain profile.	ISDB_STAAN	144-269 341-458	1	- - - - D:341-456

Biological Unit 5 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NEAT	PS50978	NEAT domain profile.	ISDB_STAAN	144-269 341-458	2	- A:341-452 B:341-458 - -

Biological Unit 6 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NEAT	PS50978	NEAT domain profile.	ISDB_STAAN	144-269 341-458	2	- - - C:341-458 D:341-456

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:114
 aligned with ISDB_STAAN | Q7A656 from UniProtKB/Swiss-Prot  Length:645

    Alignment length:114
                                   348       358       368       378       388       398       408       418       428       438       448    
           ISDB_STAAN   339 NEKMTDLQDTKYVVYESVENNESMMDTFVKHPIKTGMLNGKKYMVMETTNDDYWKDFMVEGQRVRTISKDAKNNTRTIIFPYVEGKTLYDAIVKVHVKTIDYDGQYHVRIVDKE 452
               SCOP domains d3rtla_ A: automated matches                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee..eeeee......hhhhhhh....eeeee..eeeeeeeee....eeeeee..ee.eeeeee....eeeeeee......eeeeeeeeeehhhheeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --NEAT  PDB: A:341-452 UniProt: 341-458                                                                            PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 3rtl A 339 GSKMTDLQDTKYVVYESVENNESMMDTFVKHPIKTGMLNGKKYMVMETTNDDYWKDFMVEGQRVRTISKDAKNNTRTIIFPYVEGKTLYDAIVKVHVKTIDYDGQYHVRIVDKE 452
                                   348       358       368       378       388       398       408       418       428       438       448

Chain B from PDB  Type:PROTEIN  Length:120
 aligned with ISDB_STAAN | Q7A656 from UniProtKB/Swiss-Prot  Length:645

    Alignment length:120
                                   348       358       368       378       388       398       408       418       428       438       448       458
           ISDB_STAAN   339 NEKMTDLQDTKYVVYESVENNESMMDTFVKHPIKTGMLNGKKYMVMETTNDDYWKDFMVEGQRVRTISKDAKNNTRTIIFPYVEGKTLYDAIVKVHVKTIDYDGQYHVRIVDKEAFTKAN 458
               SCOP domains d3rtlb_ B: automated matches                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee..eeeee......hhhhhhh....eeeee..eeeeeeee.hhh.eeeeee..ee.eeeeee....eeeeeee......eeeeeeeeeehhhheeeeeeeeeeehhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --NEAT  PDB: B:341-458 UniProt: 341-458                                                                                  PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 3rtl B 339 GSKMTDLQDTKYVVYESVENNESMMDTFVKHPIKTGMLNGKKYMVMETTNDDYWKDFMVEGQRVRTISKDAKNNTRTIIFPYVEGKTLYDAIVKVHVKTIDYDGQYHVRIVDKEAFTKAN 458
                                   348       358       368       378       388       398       408       418       428       438       448       458

Chain C from PDB  Type:PROTEIN  Length:120
 aligned with ISDB_STAAN | Q7A656 from UniProtKB/Swiss-Prot  Length:645

    Alignment length:120
                                   348       358       368       378       388       398       408       418       428       438       448       458
           ISDB_STAAN   339 NEKMTDLQDTKYVVYESVENNESMMDTFVKHPIKTGMLNGKKYMVMETTNDDYWKDFMVEGQRVRTISKDAKNNTRTIIFPYVEGKTLYDAIVKVHVKTIDYDGQYHVRIVDKEAFTKAN 458
               SCOP domains d3rtlc_ C: automated matches                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee..eeeee......hhhhhhh....eeeee..eeeeeeee.hhh.eeeeee..ee.eeeeee....eeeeeee......eeeeeeeeeehhhheeeeeeeeeeehhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --NEAT  PDB: C:341-458 UniProt: 341-458                                                                                  PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 3rtl C 339 GSKMTDLQDTKYVVYESVENNESMMDTFVKHPIKTGMLNGKKYMVMETTNDDYWKDFMVEGQRVRTISKDAKNNTRTIIFPYVEGKTLYDAIVKVHVKTIDYDGQYHVRIVDKEAFTKAN 458
                                   348       358       368       378       388       398       408       418       428       438       448       458

Chain D from PDB  Type:PROTEIN  Length:118
 aligned with ISDB_STAAN | Q7A656 from UniProtKB/Swiss-Prot  Length:645

    Alignment length:118
                                   348       358       368       378       388       398       408       418       428       438       448        
           ISDB_STAAN   339 NEKMTDLQDTKYVVYESVENNESMMDTFVKHPIKTGMLNGKKYMVMETTNDDYWKDFMVEGQRVRTISKDAKNNTRTIIFPYVEGKTLYDAIVKVHVKTIDYDGQYHVRIVDKEAFTK 456
               SCOP domains d3rtld_ D: automated matches                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --NEAT-3rtlD01 D:341-454                                                                                            -- Pfam domains (1)
           Pfam domains (2) --NEAT-3rtlD02 D:341-454                                                                                            -- Pfam domains (2)
           Pfam domains (3) --NEAT-3rtlD03 D:341-454                                                                                            -- Pfam domains (3)
           Pfam domains (4) --NEAT-3rtlD04 D:341-454                                                                                            -- Pfam domains (4)
         Sec.struct. author ....eeeee..eeeee......hhhhhhh....eeeee..eeeeeeeee....eeeeee..ee.eeeeee....eeeeeee......eeeeeeeeeehhhheeeeeeeeeeehhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --NEAT  PDB: D:341-456 UniProt: 341-458                                                                                PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 3rtl D 339 GSKMTDLQDTKYVVYESVENNESMMDTFVKHPIKTGMLNGKKYMVMETTNDDYWKDFMVEGQRVRTISKDAKNNTRTIIFPYVEGKTLYDAIVKVHVKTIDYDGQYHVRIVDKEAFTK 456
                                   348       358       368       378       388       398       408       418       428       438       448

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (0, 0)

Pfam Domains (1, 4)

Gene Ontology (7, 7)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (ISDB_STAAN | Q7A656)

molecular function
	GO:0015232	heme transporter activity	Enables the directed movement of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, into, out of or within a cell, or between cells.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0015886	heme transport	The directed movement of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
	GO:0005618	cell wall	The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Visualization

Interactive Views

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		CL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		HEM	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		His A:369 - Pro A:370	[ RasMol ]
		His B:369 - Pro B:370	[ RasMol ]
		His C:369 - Pro C:370	[ RasMol ]
		His D:369 - Pro D:370	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]
		Biological Unit 5	[ Jena3D ]
		Biological Unit 6	[ Jena3D ]

Still Images

Databases and Analysis Tools

Databases

Access by PDB/NDB ID
	3rtl
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	ISDB_STAAN \| Q7A656
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 10)

Sites (10, 10)