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3RTL
Biol. Unit 4
Info
Asym.Unit (210 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (54 KB)
Biol.Unit 3 (55 KB)
Biol.Unit 4 (53 KB)
Biol.Unit 5 (100 KB)
Biol.Unit 6 (104 KB)
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(1)
Title
:
STAPHYLOCOCCUS AUREUS HEME-BOUND ISDB-N2
Authors
:
C. F. M. Gaudin, J. C. Grigg, A. L. Arrieta, M. E. P. Murphy
Date
:
03 May 11 (Deposition) - 18 May 11 (Release) - 29 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B (1x)
Biol. Unit 6: C,D (1x)
Keywords
:
Heme Protein, Neat Domain, Heme Uptake, Heme Binding, Cell Wall, Metal Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. F. Gaudin, J. C. Grigg, A. L. Arrieta, M. E. Murphy
Unique Heme-Iron Coordination By The Hemoglobin Receptor Isdb Of Staphylococcus Aureus.
Biochemistry V. 50 5443 2011
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(5, 5)
Info
All Sites
1: AC6 (SOFTWARE)
2: AC7 (SOFTWARE)
3: AC8 (SOFTWARE)
4: AC9 (SOFTWARE)
5: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC6
SOFTWARE
HOH C:1 , HOH C:66 , HOH C:188 , GLU C:354 , SER C:361 , MET C:362 , PHE C:366 , TYR C:391 , TRP C:392 , VAL C:433 , VAL C:435 , TYR C:440 , TYR C:444 , VAL C:446 , HOH C:491 , HOH C:532 , HEM D:200 , THR D:365 , PHE D:366 , HOH D:483
BINDING SITE FOR RESIDUE HEM C 200
2
AC7
SOFTWARE
GLU C:354 , HOH C:510 , HOH C:595 , HOH C:617 , HOH D:486 , HOH D:608
BINDING SITE FOR RESIDUE MG C 18
3
AC8
SOFTWARE
HEM C:200 , THR C:365 , ASN C:388 , TYR C:391 , ILE C:438 , HOH C:460 , HOH C:467 , HOH D:9 , HOH D:65 , GLU D:354 , SER D:361 , MET D:362 , PHE D:366 , TRP D:392 , VAL D:433 , VAL D:435 , ILE D:438 , TYR D:440 , TYR D:444 , VAL D:446
BINDING SITE FOR RESIDUE HEM D 200
4
AC9
SOFTWARE
HOH C:127 , HOH C:607 , HOH D:22 , GLU D:354 , HOH D:602 , HOH D:616
BINDING SITE FOR RESIDUE MG D 4
5
BC1
SOFTWARE
LYS C:379 , LYS C:380 , THR D:404 , LYS D:407 , ARG D:414
BINDING SITE FOR RESIDUE CL D 1
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: NEAT (D:341-456)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NEAT
PS50978
NEAT domain profile.
ISDB_STAAN
144-269
341-458
1
-
-
-
-
D:341-456
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3rtla_ (A:)
1b: SCOP_d3rtlb_ (B:)
1c: SCOP_d3rtlc_ (C:)
1d: SCOP_d3rtld_ (D:)
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
NEAT domain-like
(27)
Family
:
automated matches
(13)
Protein domain
:
automated matches
(13)
Staphylococcus aureus [TaxId: 158879]
(7)
1a
d3rtla_
A:
1b
d3rtlb_
B:
1c
d3rtlc_
C:
1d
d3rtld_
D:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_NEAT_3rtlD01 (D:341-454)
1b: PFAM_NEAT_3rtlD02 (D:341-454)
1c: PFAM_NEAT_3rtlD03 (D:341-454)
1d: PFAM_NEAT_3rtlD04 (D:341-454)
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)
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)
Clan
:
no clan defined [family: NEAT]
(8)
Family
:
NEAT
(8)
Staphylococcus aureus (strain N315)
(3)
1a
NEAT-3rtlD01
D:341-454
1b
NEAT-3rtlD02
D:341-454
1c
NEAT-3rtlD03
D:341-454
1d
NEAT-3rtlD04
D:341-454
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Chain D
Asymmetric Unit 1
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Asym.Unit (210 KB)
Header - Asym.Unit
Biol.Unit 1 (51 KB)
Header - Biol.Unit 1
Biol.Unit 2 (54 KB)
Header - Biol.Unit 2
Biol.Unit 3 (55 KB)
Header - Biol.Unit 3
Biol.Unit 4 (53 KB)
Header - Biol.Unit 4
Biol.Unit 5 (100 KB)
Header - Biol.Unit 5
Biol.Unit 6 (104 KB)
Header - Biol.Unit 6
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