3ROI - JenaLib

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Biological Unit 3 (Jmol Viewer)

Title :   2.20 ANGSTROM RESOLUTION STRUCTURE OF 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE (AROA) FROM COXIELLA BURNETII

Authors :   S. H. Light, G. Minasov, S. N. Krishna, A. S. Halavaty, L. Shuvalova, L. P W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)

Date :   25 Apr 11 (Deposition) - 18 May 11 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A,B  (1x)

Keywords :   Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. H. Light, G. Minasov, S. N. Krishna, A. S. Halavaty, L. Shuvalova, L. Papazisi, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
2. 20 Angstrom Resolution Structure Of 3-Phosphoshikimate 1-Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
To Be Published
PubMed: search

Molecule 1 - 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE
	Chains	:	A, B
	EC Number	:	2.5.1.19
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	MCSG7
	Expression System Strain	:	BL21 MAGIC
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	AROA, CBU_0526
	Organism Scientific	:	COXIELLA BURNETII
	Organism Taxid	:	227377
	Strain	:	RSA 493
	Synonym	:	5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE SYNTHASE, EPSP SYNTHASE, EPSPS

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 20)

No.	Name	Count	Type	Full Name
1	CL	4	Ligand/Ion	CHLORIDE ION
2	SO4	16	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 11)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	SO4	11	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 5)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	SO4	5	Ligand/Ion	SULFATE ION

Biological Unit 3 (1, 16)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	SO4	16	Ligand/Ion	SULFATE ION

Asymmetric Unit (20, 20)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	MET A:45 , ASN A:70 , PHE A:415 , PRO A:416 , ASN A:417	BINDING SITE FOR RESIDUE CL A 439
02	AC2	SOFTWARE	LYS A:21 , ASN A:93 , SER A:94 , GLY A:95 , THR A:96 , ARG A:123	BINDING SITE FOR RESIDUE SO4 A 440
03	AC3	SOFTWARE	ARG A:406 , ASN A:407	BINDING SITE FOR RESIDUE SO4 A 441
04	AC4	SOFTWARE	THR A:262 , ARG A:263 , LEU A:264 , GLN A:309 , LEU A:312 , HOH A:566 , LYS B:271	BINDING SITE FOR RESIDUE SO4 A 442
05	AC5	SOFTWARE	GLY A:143 , LYS B:330	BINDING SITE FOR RESIDUE SO4 A 443
06	AC6	SOFTWARE	HIS A:160 , GLY A:183 , LYS A:184 , HOH A:489 , LYS B:222 , LYS B:224	BINDING SITE FOR RESIDUE SO4 A 444
07	AC7	SOFTWARE	LYS A:356 , ASN A:381 , ARG A:406 , GLN B:58	BINDING SITE FOR RESIDUE SO4 A 445
08	AC8	SOFTWARE	ARG A:99 , ARG A:123 , ARG A:127	BINDING SITE FOR RESIDUE SO4 A 446
09	AC9	SOFTWARE	SER A:22 , ARG A:26 , THR A:96 , GLN A:169 , HOH A:520	BINDING SITE FOR RESIDUE SO4 A 447
10	BC1	SOFTWARE	GLY A:329 , LYS A:330 , GLN A:371 , HOH A:567	BINDING SITE FOR RESIDUE SO4 A 448
11	BC2	SOFTWARE	HIS A:297 , ARG A:299 , HOH A:561 , HOH A:572 , ARG B:299	BINDING SITE FOR RESIDUE SO4 A 449
12	BC3	SOFTWARE	ASP A:68 , PRO A:124 , LYS A:126 , ARG A:127	BINDING SITE FOR RESIDUE SO4 A 450
13	BC4	SOFTWARE	MET B:45 , ASN B:70 , PHE B:415 , PRO B:416 , ASN B:417	BINDING SITE FOR RESIDUE CL B 439
14	BC5	SOFTWARE	SER B:172 , ARG B:194 , HIS B:196 , THR B:197	BINDING SITE FOR RESIDUE CL B 440
15	BC6	SOFTWARE	SER B:167 , ALA B:168	BINDING SITE FOR RESIDUE CL B 441
16	BC7	SOFTWARE	LYS A:271 , THR B:262 , ARG B:263 , LEU B:264 , GLN B:309	BINDING SITE FOR RESIDUE SO4 B 442
17	BC8	SOFTWARE	SER B:22 , ARG B:26 , THR B:96 , ARG B:99 , GLN B:169 , ARG B:194 , HOH B:505	BINDING SITE FOR RESIDUE SO4 B 443
18	BC9	SOFTWARE	LYS A:222 , LYS B:184	BINDING SITE FOR RESIDUE SO4 B 444
19	CC1	SOFTWARE	ARG B:99 , ARG B:123 , GLN B:169	BINDING SITE FOR RESIDUE SO4 B 445
20	CC2	SOFTWARE	ASN B:93 , SER B:94 , GLY B:95 , THR B:96 , ARG B:99 , ARG B:123 , HOH B:452	BINDING SITE FOR RESIDUE SO4 B 446

Asymmetric Unit

No.	Residues
1	A:186	-	A:216
2	B:186	-	B:216

Asymmetric Unit

No.	Residues
1	Pro A:146	-	Pro A:147
2	Pro B:146	-	Pro B:147

(no "SAP(SNP)/Variant" information available for 3ROI)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EPSP_SYNTHASE_1	PS00104	EPSP synthase signature 1.	AROA_COXBU	89-103	2	A:89-103 B:89-103
2	EPSP_SYNTHASE_2	PS00885	EPSP synthase signature 2.	AROA_COXBU	340-358	2	A:340-358 B:340-358

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EPSP_SYNTHASE_1	PS00104	EPSP synthase signature 1.	AROA_COXBU	89-103	1	A:89-103 -
2	EPSP_SYNTHASE_2	PS00885	EPSP synthase signature 2.	AROA_COXBU	340-358	1	A:340-358 -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EPSP_SYNTHASE_1	PS00104	EPSP synthase signature 1.	AROA_COXBU	89-103	1	- B:89-103
2	EPSP_SYNTHASE_2	PS00885	EPSP synthase signature 2.	AROA_COXBU	340-358	1	- B:340-358

Biological Unit 3 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EPSP_SYNTHASE_1	PS00104	EPSP synthase signature 1.	AROA_COXBU	89-103	2	A:89-103 B:89-103
2	EPSP_SYNTHASE_2	PS00885	EPSP synthase signature 2.	AROA_COXBU	340-358	2	A:340-358 B:340-358

(no "Exon" information available for 3ROI)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:431
 aligned with AROA_COXBU | Q83E11 from UniProtKB/Swiss-Prot  Length:438

    Alignment length:436
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                  
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429      
           AROA_COXBU     - -MDYQTIPSQGLSGEICVPGDKSISHRAVLLAAIAEGQTQVDGFLMGADNLAMVSALQQMGASIQVIEDENILVVEGVGMTGLQAPPEALDCGNSGTAIRLLSGLLAGQPFNTVLTGDSSLQRRPMKRIIDPLTLMGAKIDSTGNVPPLKIYGNPRLTGIHYQLPMASAQVKSCLLLAGLYARGKTCITEPAPSRDHTERLLKHFHYTLQKDKQSICVSGGGKLKANDISIPGDISSAAFFIVAATITPGSAIRLCRVGVNPTRLGVINLLKMMGADIEVTHYTEKNEEPTADITVRHARLKGIDIPPDQVPLTIDEFPVLLIAAAVAQGKTVLRDAAELRVKETDRIAAMVDGLQKLGIAAESLPDGVIIQGGTLEGGEVNSYDDHRIAMAFAVAGTLAKGPVRIRNCDNVKTSFPNFVELANEVGMNVKGVRGR 435
               SCOP domains d3roia_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eeee....hhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh..eeeeehhh.eeeee.............ee...hhhhhhhhhhhhhh...eeeee...hhhhh.hhhhhhhhhhh..eee.......eeee........eee....hhhhhhhhhhhhh....eeeee......hhhhhhhhhh.....----.eeee.........ee...hhhhhhhhhhhhhhh...eeeeeeee.....hhhhhhhhhh..eeeeeeee...-..eeeeeee.......eehhhhhhhhhhhh.hhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhhhh...eeee..eeeee......eeee...hhhhhhhhhhhhhhh...eeee.hhhhhhhh.hhhhhhhhh...eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------EPSP_SYNTHASE_1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EPSP_SYNTHASE_2    ----------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3roi A   0 AMDYQTIPSQGLSGEICVPGDKSISHRAVLLAAIAEGQTQVDGFLMGADNLAMVSALQQMGASIQVIEDENILVVEGVGMTGLQAPPEALDCGNSGTAIRLLSGLLAGQPFNTVLTGDSSLQRRPMKRIIDPLTLMGAKIDSTGNVPPLKIYGNPRLTGIHYQLPMASAQVKSCLLLAGLYARGKTCITEPAPSRDHTERLLKHFHYTLQ----SICVSGGGKLKANDISIPGDISSAAFFIVAATITPGSAIRLCRVGVNPTRLGVINLLKMMGADIEVTHYTEKN-EPTADITVRHARLKGIDIPPDQVPLTIDEFPVLLIAAAVAQGKTVLRDAAELRVKETDRIAAMVDGLQKLGIAAESLPDGVIIQGGTLEGGEVNSYDDHRIAMAFAVAGTLAKGPVRIRNCDNVKTSFPNFVELANEVGMNVKGVRGR 435
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209    |  219       229       239       249       259       269       279      |289       299       309       319       329       339       349       359       369       379       389       399       409       419       429      
                                                                                                                                                                                                                                           209  214                                                                     286 |                                                                                                                                                   
                                                                                                                                                                                                                                                                                                                          288

Chain B from PDB  Type:PROTEIN  Length:432
 aligned with AROA_COXBU | Q83E11 from UniProtKB/Swiss-Prot  Length:438

    Alignment length:433
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430   
           AROA_COXBU     1 MDYQTIPSQGLSGEICVPGDKSISHRAVLLAAIAEGQTQVDGFLMGADNLAMVSALQQMGASIQVIEDENILVVEGVGMTGLQAPPEALDCGNSGTAIRLLSGLLAGQPFNTVLTGDSSLQRRPMKRIIDPLTLMGAKIDSTGNVPPLKIYGNPRLTGIHYQLPMASAQVKSCLLLAGLYARGKTCITEPAPSRDHTERLLKHFHYTLQKDKQSICVSGGGKLKANDISIPGDISSAAFFIVAATITPGSAIRLCRVGVNPTRLGVINLLKMMGADIEVTHYTEKNEEPTADITVRHARLKGIDIPPDQVPLTIDEFPVLLIAAAVAQGKTVLRDAAELRVKETDRIAAMVDGLQKLGIAAESLPDGVIIQGGTLEGGEVNSYDDHRIAMAFAVAGTLAKGPVRIRNCDNVKTSFPNFVELANEVGMNVKGVR 433
               SCOP domains d3roib_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----EPSP_synthase-3roiB01 B:5-422                                                                                                                                                                                                                                                                                                                                                                                                     ----------- Pfam domains (1)
           Pfam domains (2) ----EPSP_synthase-3roiB02 B:5-422                                                                                                                                                                                                                                                                                                                                                                                                     ----------- Pfam domains (2)
         Sec.struct. author .eeeee.....eeeee...hhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhh..eeeeehhhheeeee.............ee...hhhhhhhhhhhhhh...eeeee...hhhhh.hhhhhhhhhhh..eee.......eeee........eee....hhhhhhhhhhhhh....eeeee......hhhhhhhhhh....ee....eeee.........ee...hhhhhhhhhhhhhhh...eeeeeeee.....hhhhhhhhhh..eeeeeeee..-...eeeeeee.......eehhhhhhhhhhhh.hhhhhhhh...eeeee.....hhhhhhhhhhhhhhhhhh...eeee..eeeee......eeee...hhhhhhhhhhhhhhh...eeee.hhhhhhhh.hhhhhhhhh..eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------EPSP_SYNTHASE_1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EPSP_SYNTHASE_2    --------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3roi B   1 MDYQTIPSQGLSGEICVPGDKSISHRAVLLAAIAEGQTQVDGFLMGADNLAMVSALQQMGASIQVIEDENILVVEGVGMTGLQAPPEALDCGNSGTAIRLLSGLLAGQPFNTVLTGDSSLQRRPMKRIIDPLTLMGAKIDSTGNVPPLKIYGNPRLTGIHYQLPMASAQVKSCLLLAGLYARGKTCITEPAPSRDHTERLLKHFHYTLQKDKQSICVSGGGKLKANDISIPGDISSAAFFIVAATITPGSAIRLCRVGVNPTRLGVINLLKMMGADIEVTHYTEK-EEPTADITVRHARLKGIDIPPDQVPLTIDEFPVLLIAAAVAQGKTVLRDAAELRVKETDRIAAMVDGLQKLGIAAESLPDGVIIQGGTLEGGEVNSYDDHRIAMAFAVAGTLAKGPVRIRNCDNVKTSFPNFVELANEVGMNVKGVR 433
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280    | |290       300       310       320       330       340       350       360       370       380       390       400       410       420       430   
                                                                                                                                                                                                                                                                                                                      285 |                                                                                                                                                  
                                                                                                                                                                                                                                                                                                                        287

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: IF3-like (127)

Superfamily: EPT/RTPC-like (82)

Family: automated matches (12)

Protein domain: automated matches (12)

Coxiella burnetii [TaxId: 227377] (3)

1a	d3roia_	A:
1b	d3roib_	B:

(no "CATH Domain" information available for 3ROI)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: EPT_RTPC (43)

Family: EPSP_synthase (40)

Coxiella burnetii (1)

1a	EPSP_synthase-3roiB01	B:5-422
1b	EPSP_synthase-3roiB02	B:5-422

Asymmetric Unit(hide GO term definitions)

Chain A,B (AROA_COXBU | Q83E11)

molecular function
	GO:0003866	3-phosphoshikimate 1-carboxyvinyltransferase activity	Catalysis of the reaction: 3-phosphoshikimate + phosphoenolpyruvate = 5-O-(1-carboxyvinyl)-3-phosphoshikimate + phosphate.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor).
biological process
	GO:0009073	aromatic amino acid family biosynthetic process	The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
	GO:0008652	cellular amino acid biosynthetic process	The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
	GO:0009423	chorismate biosynthetic process	The chemical reactions and pathways resulting in the formation of the unsymmetrical ether derived from phosphoenolpyruvate and 5-phosphoshikimic acid formed as an intermediate in the biosynthesis of aromatic amino acids and many other compounds.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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	3roi
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	AROA_COXBU \| Q83E11	:	3slh 3tr1 4egr 4gfp 4znd

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Description

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Chains, Units

Ligands, Modified Residues, Ions (2, 20)

Sites (20, 20)

SS Bonds (2, 2)

Cis Peptide Bonds (2, 2)

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