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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   STRUCTURE OF A 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE (AROA) FROM COXIELLA BURNETII

Authors :   J. Cheung, M. C. Franklin, M. Rudolph, M. Cassidy, E. Gary, F. Burshteyn

Date :   09 Sep 11 (Deposition) - 28 Sep 11 (Release) - 10 Feb 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A

Keywords :   Amino Acid Biosynthesis, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. C. Franklin, J. Cheung, M. J. Rudolph, F. Burshteyn, M. Cassidy, E. Gary, B. Hillerich, Z. K. Yao, P. R. Carlier, M. Totrov, J. D. Love
Structural Genomics For Drug Design Against The Pathogen Coxiella Burnetii.
Proteins V. 83 2124 2015
PubMed-ID: 26033498 | Reference-DOI: 10.1002/PROT.24841

Molecule 1 - 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE
	Chains	:	A
	EC Number	:	2.5.1.19
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	AROA, CBU_0526
	Organism Scientific	:	COXIELLA BURNETII
	Organism Taxid	:	777
	Strain	:	RSA493
	Synonym	:	5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE SYNTHASE, EPSP SYNTHASE, EPSPS

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 19)

No.	Name	Count	Type	Full Name
1	K	1	Ligand/Ion	POTASSIUM ION
2	MSE	13	Mod. Amino Acid	SELENOMETHIONINE
3	PO4	5	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:21 , ASP A:315 , LYS A:342 , GLU A:343 , ARG A:346 , HIS A:386 , ARG A:387 , PO4 A:440	BINDING SITE FOR RESIDUE PO4 A 439
2	AC2	SOFTWARE	LYS A:21 , ASN A:93 , SER A:94 , GLY A:95 , THR A:96 , ARG A:123 , GLU A:343 , PO4 A:439 , K A:444 , HOH A:448	BINDING SITE FOR RESIDUE PO4 A 440
3	AC3	SOFTWARE	ARG A:26 , SER A:167 , ALA A:168 , GLN A:169 , LYS A:171 , SER A:172 , SER A:193 , ARG A:194 , PO4 A:442	BINDING SITE FOR RESIDUE PO4 A 441
4	AC4	SOFTWARE	SER A:22 , ARG A:26 , GLN A:169 , ARG A:194 , PO4 A:441	BINDING SITE FOR RESIDUE PO4 A 442
5	AC5	SOFTWARE	PRO A:124 , LYS A:126 , ARG A:127 , HOH A:639	BINDING SITE FOR RESIDUE PO4 A 443
6	AC6	SOFTWARE	ASP A:48 , ASN A:93 , GLU A:343 , PO4 A:440 , HOH A:651	BINDING SITE FOR RESIDUE K A 444

Asymmetric/Biological Unit

No.	Residues
1	A:16	-	A:255
2	A:186	-	A:216

Asymmetric/Biological Unit

No.	Residues
1	Pro A:146	-	Pro A:147
2	Gln A:209	-	Lys A:210

(no "SAP(SNP)/Variant" information available for 3TR1)

Asymmetric/Biological Unit (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EPSP_SYNTHASE_1	PS00104	EPSP synthase signature 1.	AROA_COXBU	89-103	1	A:89-103
2	EPSP_SYNTHASE_2	PS00885	EPSP synthase signature 2.	AROA_COXBU	340-358	1	A:340-358

(no "Exon" information available for 3TR1)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:436
 aligned with AROA_COXBU | Q83E11 from UniProtKB/Swiss-Prot  Length:438

    Alignment length:437
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                   
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       
           AROA_COXBU     - -MDYQTIPSQGLSGEICVPGDKSISHRAVLLAAIAEGQTQVDGFLMGADNLAMVSALQQMGASIQVIEDENILVVEGVGMTGLQAPPEALDCGNSGTAIRLLSGLLAGQPFNTVLTGDSSLQRRPMKRIIDPLTLMGAKIDSTGNVPPLKIYGNPRLTGIHYQLPMASAQVKSCLLLAGLYARGKTCITEPAPSRDHTERLLKHFHYTLQKDKQSICVSGGGKLKANDISIPGDISSAAFFIVAATITPGSAIRLCRVGVNPTRLGVINLLKMMGADIEVTHYTEKNEEPTADITVRHARLKGIDIPPDQVPLTIDEFPVLLIAAAVAQGKTVLRDAAELRVKETDRIAAMVDGLQKLGIAAESLPDGVIIQGGTLEGGEVNSYDDHRIAMAFAVAGTLAKGPVRIRNCDNVKTSFPNFVELANEVGMNVKGVRGRG 436
               SCOP domains d3tr1a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee......eeee....hhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh..eeeeehhhheeeee.............ee...hhhhhhhhhhhhhh...eeeee...hhhhh.hhhhhhhhhhh..eeeee..eeeeeee........eee......hhhhhhhhhhhhh..eeeee......hhhhhhhhhh......-..eeeee.........ee...hhhhhhhhhhhhhhh...eeeeeeee.hhhhhhhhhhhhhhh.eeeeeeeee....eeeeeeee.........hhhhhhhhh.hhhhhhhhhhhh..eeee..hhhhhhh..hhhhhhhhhhhhh..eeeee..eeeee......eeee...hhhhhhhhhhhh......eeee.hhhhhhh..hhhhhhhhhh..eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------EPSP_SYNTHASE_1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EPSP_SYNTHASE_2    ------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tr1 A   0 VmDYQTIPSQGLSGEICVPGDKSISHRAVLLAAIAEGQTQVDGFLmGADNLAmVSALQQmGASIQVIEDENILVVEGVGmTGLQAPPEALDCGNSGTAIRLLSGLLAGQPFNTVLTGDSSLQRRPmKRIIDPLTLmGAKIDSTGNVPPLKIYGNPRLTGIHYQLPmASAQVKSCLLLAGLYARGKTCITEPAPSRDHTERLLKHFHYTLQK-KQSICVSGGGKLKANDISIPGDISSAAFFIVAATITPGSAIRLCRVGVNPTRLGVINLLKmmGADIEVTHYTEKNEEPTADITVRHARLKGIDIPPDQVPLTIDEFPVLLIAAAVAQGKTVLRDAAELRVKETDRIAAmVDGLQKLGIAAESLPDGVIIQGGTLEGGEVNSYDDHRIAmAFAVAGTLAKGPVRIRNCDNVKTSFPNFVELANEVGmNVKGVRGRG 436
                             |       9        19        29        39     |  49  |     59        69        79        89        99       109       119     | 129     | 139       149       159     | 169       179       189       199       209| |    219       229       239       249       259       269  ||   279       289       299       309       319       329       339       349|      359       369       379       389|      399       409       419       429       
                             |                                          45-MSE 52-MSE 59-MSE              79-MSE                                       125-MSE   135-MSE                       165-MSE                                      210 |                                                         272-MSE                                                                       350-MSE                                 390-MSE                              427-MSE     
                             1-MSE                                                                                                                                                                                                            212                                                          273-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

)

Protein Domains( (-)

)

Organisms( (-)

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Class: Alpha and beta proteins (a+b) (23004)

Fold: IF3-like (127)

Superfamily: EPT/RTPC-like (82)

Family: automated matches (12)

Protein domain: automated matches (12)

Coxiella burnetii [TaxId: 777] (2)

d3tr1a_

(no "CATH Domain" information available for 3TR1)

(no "Pfam Domain" information available for 3TR1)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (AROA_COXBU | Q83E11)

molecular function
	GO:0003866	3-phosphoshikimate 1-carboxyvinyltransferase activity	Catalysis of the reaction: 3-phosphoshikimate + phosphoenolpyruvate = 5-O-(1-carboxyvinyl)-3-phosphoshikimate + phosphate.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor).
biological process
	GO:0009073	aromatic amino acid family biosynthetic process	The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
	GO:0008652	cellular amino acid biosynthetic process	The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
	GO:0009423	chorismate biosynthetic process	The chemical reactions and pathways resulting in the formation of the unsymmetrical ether derived from phosphoenolpyruvate and 5-phosphoshikimic acid formed as an intermediate in the biosynthesis of aromatic amino acids and many other compounds.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Gln A:209 - Lys A:210	[ RasMol ]
		Pro A:146 - Pro A:147	[ RasMol ]

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	3tr1
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	AROA_COXBU \| Q83E11
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	2.5.1.19
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	AROA_COXBU \| Q83E11	:	3roi 3slh 4egr 4gfp 4znd

(no "Related Entries Specified in the PDB File" available for 3TR1)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 19)

Sites (6, 6)

SS Bonds (2, 2)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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