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(-) Description

Title :  CRYSTAL STRUCTURE OF THE YEAST RACK1 DIMER IN SPACE GROUP P21
 
Authors :  L. Yatime, K. L. Hein, J. Nilsson, P. Nissen
Date :  06 Apr 11  (Deposition) - 06 Jul 11  (Release) - 26 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Beta-Propeller, Dimer, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Yatime, K. L. Hein, J. Nilsson, P. Nissen
Structure Of The Rack1 Dimer From Saccharomyces Cerevisiae
J. Mol. Biol. V. 411 486 2011
PubMed-ID: 21704636  |  Reference-DOI: 10.1016/J.JMB.2011.06.017

(-) Compounds

Molecule 1 - GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-LIKE PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET46 EK/LIC
    Expression System Strain: C43(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ASC1, CPC2, YM9718.15C, YMR116C
    Mutation: YES
    Organism Common: YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: S288C
    Synonym: RECEPTOR FOR ACTIVATED C KINASE, RECEPTOR OF ACTIVATED PROTEIN KINASE C 1, RACK1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3RFH)

(-) Sites  (0, 0)

(no "Site" information available for 3RFH)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RFH)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Asp A:51 -Gln A:52
2Asp A:266 -Pro A:267
3Asp B:266 -Pro B:267
4Asp C:266 -Pro C:267
5Asp D:266 -Pro D:267

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RFH)

(-) PROSITE Motifs  (1, 12)

Asymmetric Unit (1, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1WD_REPEATS_1PS00678 Trp-Asp (WD) repeats signature.GBLP_YEAST80-94
 
 
 
169-183
 
 
 
211-225
 
 
 		  12A:80-94
B:80-94
C:80-94
D:80-94
A:183-183
B:183-183
C:183-183
D:169-183
A:211-225
B:211-225
C:211-225
D:211-225
Biological Unit 1 (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1WD_REPEATS_1PS00678 Trp-Asp (WD) repeats signature.GBLP_YEAST80-94
 
 
 
169-183
 
 
 
211-225
 
 
 		  6A:80-94
-
C:80-94
-
A:183-183
-
C:183-183
-
A:211-225
-
C:211-225
-
Biological Unit 2 (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1WD_REPEATS_1PS00678 Trp-Asp (WD) repeats signature.GBLP_YEAST80-94
 
 
 
169-183
 
 
 
211-225
 
 
 		  6-
B:80-94
-
D:80-94
-
B:183-183
-
D:169-183
-
B:211-225
-
D:211-225

(-) Exons   (2, 8)

Asymmetric Unit (2, 8)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1YMR116C1YMR116C.1XIII:500687-500151537GBLP_YEAST1-1791794A:3-158
B:3-157
C:6-161
D:5-179 (gaps)		156
155
156
175
1.2YMR116C2YMR116C.2XIII:499877-499455423GBLP_YEAST180-3191404A:183-317
B:183-317
C:183-316 (gaps)
D:180-316		135
135
134
137

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:291
 aligned with GBLP_YEAST | P38011 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:315
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312     
           GBLP_YEAST     3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..........eeeeee......eeeeee....eeeeee.......eeeeeee......eeeeee.....eeeeee...eeeeee.....eeeeee.....eeeeee.....eeeeee...eeeeee....eeeeeee...eeeeeee..------------------------..eeeeeeeeee.......eee.....eeeee....eeeeee....eeeeeee....eeeeee.....eeeeee..eeeeee....eeeeee..............eeeeee.....eeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------WD_REPEATS_1   --------------------------------------------------------------------------WD_REPEATS_1   ---------------------------WD_REPEATS_1   -------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: A:3-158 UniProt: 1-179 [INCOMPLETE]                                                                                                                               Exon 1.2  PDB: A:183-317 UniProt: 180-319 [INCOMPLETE]                                                                                     Transcript 1
                 3rfh A   3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVP------------------------LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152     |   -         -         -|      192       202       212       222       232       242       252       262       272       282       292       302       312     
                                                                                                                                                                                     158                      183                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:290
 aligned with GBLP_YEAST | P38011 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:315
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312     
           GBLP_YEAST     3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee......eeeee.......eeeeee....eeeee.........eeeeee......eeeeee.....eeeeee...eeeeee.....eeeeee.....eeeeee.....eeeeee....eeeee....eeeeeee...eeeeeeee-------------------------..eeeeeeeeee.......eee.....eeeee....eeeeee....eeeeeee....eeeeee.....eeeeee..eeeeee....eeeeee..............eeeeee.....eeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------WD_REPEATS_1   --------------------------------------------------------------------------WD_REPEATS_1   ---------------------------WD_REPEATS_1   -------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: B:3-157 UniProt: 1-179 [INCOMPLETE]                                                                                                                               Exon 1.2  PDB: B:183-317 UniProt: 180-319 [INCOMPLETE]                                                                                     Transcript 1
                 3rfh B   3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVV-------------------------LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152    |    -         -         -|      192       202       212       222       232       242       252       262       272       282       292       302       312     
                                                                                                                                                                                    157                       183                                                                                                                                      


Chain C from PDB  Type:PROTEIN  Length:288
 aligned with GBLP_YEAST | P38011 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:311
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315 
           GBLP_YEAST     6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee......eeeeee......eeeeee....eeeeee.......eee..........eeeeee.....eeeeee...eeeeee.....eeeeee.....eeeeee.....eeeeee...eeeeee....eeeeeee...eeeeeee.....---------------------..eeeeeeeeee.......eee.....eeeee....eeeeee....eeeeeee....eeeeee.....eeeeee..eeeeee....eeeeee.......--.....eeeeee.....eeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------WD_REPEATS_1   --------------------------------------------------------------------------WD_REPEATS_1   ---------------------------WD_REPEATS_1   ------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: C:6-161 UniProt: 1-179 [INCOMPLETE]                                                                                                                            Exon 1.2  PDB: C:183-316 (gaps) UniProt: 180-319 [INCOMPLETE]                                                                             Transcript 1
                 3rfh C   6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK---------------------LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGY--AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155     |   -         -       185       195       205       215       225       235       245       255       265       275     | 285       295       305       315 
                                                                                                                                                                                     161                   183                                                                                               281  |                                
                                                                                                                                                                                                                                                                                                                284                                


Chain D from PDB  Type:PROTEIN  Length:307
 aligned with GBLP_YEAST | P38011 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:312
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314  
           GBLP_YEAST     5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD01 D:290-314   -- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD02 D:290-314   -- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD03 D:290-314   -- Pfam domains (3)
           Pfam domains (4) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD04 D:290-314   -- Pfam domains (4)
           Pfam domains (5) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD05 D:290-314   -- Pfam domains (5)
           Pfam domains (6) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD06 D:290-314   -- Pfam domains (6)
           Pfam domains (7) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD07 D:290-314   -- Pfam domains (7)
           Pfam domains (8) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD08 D:290-314   -- Pfam domains (8)
           Pfam domains (9) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD09 D:290-314   -- Pfam domains (9)
          Pfam domains (10) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD10 D:290-314   -- Pfam domains (10)
          Pfam domains (11) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD11 D:290-314   -- Pfam domains (11)
          Pfam domains (12) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD12 D:290-314   -- Pfam domains (12)
          Pfam domains (13) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD13 D:290-314   -- Pfam domains (13)
          Pfam domains (14) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD14 D:290-314   -- Pfam domains (14)
          Pfam domains (15) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD15 D:290-314   -- Pfam domains (15)
          Pfam domains (16) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD16 D:290-314   -- Pfam domains (16)
          Pfam domains (17) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD17 D:290-314   -- Pfam domains (17)
          Pfam domains (18) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD18 D:290-314   -- Pfam domains (18)
          Pfam domains (19) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD19 D:290-314   -- Pfam domains (19)
          Pfam domains (20) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD20 D:290-314   -- Pfam domains (20)
          Pfam domains (21) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD21 D:290-314   -- Pfam domains (21)
          Pfam domains (22) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD22 D:290-314   -- Pfam domains (22)
          Pfam domains (23) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD23 D:290-314   -- Pfam domains (23)
          Pfam domains (24) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD40-3rfhD24 D:290-314   -- Pfam domains (24)
         Sec.struct. author .eeeeeeee......eeeeee......eeeeee....eeeeee.......eeeeeee......eeeeee.....eeeeee...eeeeee.....eeeeee.....eeeeee.....eeeeee...eeeeee....eeeeeee...eeeeeeee.......eeee..-----.eeee....eeeeeeeeee.......eee.....eeeee....eeeeee....eeeeeee....eeeeeee..eeeeeeee..eeeeee....eeeeee..............eeeeee.....eeeeee....eeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------WD_REPEATS_1   --------------------------------------------------------------------------WD_REPEATS_1   ---------------------------WD_REPEATS_1   ------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: D:5-179 (gaps) UniProt: 1-179 [INCOMPLETE]                                                                                                                      Exon 1.2  PDB: D:180-316 UniProt: 180-319 [INCOMPLETE]                                                                                    Transcript 1
                 3rfh D   5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTII-----KMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164     |   - |     184       194       204       214       224       234       244       254       264       274       284       294       304       314  
                                                                                                                                                                                               170   176
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3RFH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RFH)

(-) Pfam Domains  (1, 24)

Asymmetric Unit
(-)
Clan: Beta_propeller (192)
(-)
Family: WD40 (64)
(-)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast) (18)
1aWD40-3rfhD01D:290-314
1bWD40-3rfhD02D:290-314
1cWD40-3rfhD03D:290-314
1dWD40-3rfhD04D:290-314
1eWD40-3rfhD05D:290-314
1fWD40-3rfhD06D:290-314
1gWD40-3rfhD07D:290-314
1hWD40-3rfhD08D:290-314
1iWD40-3rfhD09D:290-314
1jWD40-3rfhD10D:290-314
1kWD40-3rfhD11D:290-314
1lWD40-3rfhD12D:290-314
1mWD40-3rfhD13D:290-314
1nWD40-3rfhD14D:290-314
1oWD40-3rfhD15D:290-314
1pWD40-3rfhD16D:290-314
1qWD40-3rfhD17D:290-314
1rWD40-3rfhD18D:290-314
1sWD40-3rfhD19D:290-314
1tWD40-3rfhD20D:290-314
1uWD40-3rfhD21D:290-314
1vWD40-3rfhD22D:290-314
1wWD40-3rfhD23D:290-314
1xWD40-3rfhD24D:290-314

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (GBLP_YEAST | P38011)
molecular function
    GO:0001965    G-protein alpha-subunit binding    Interacting selectively and non-covalently with a G-protein alpha subunit. The alpha subunit binds a guanine nucleotide.
    GO:0005092    GDP-dissociation inhibitor activity    Prevents the dissociation of GDP from a GTPase, thereby preventing GTP from binding.
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
biological process
    GO:0007186    G-protein coupled receptor signaling pathway    A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576).
    GO:0010255    glucose mediated signaling pathway    The process in which a change in the level of mono- and disaccharide glucose trigger the expression of genes controlling metabolic and developmental processes.
    GO:0001403    invasive growth in response to glucose limitation    A growth pattern exhibited by budding haploid cells under certain growth conditions, in which cells retain the typical axial budding pattern of haploids, but become elongated and fail to separate after division; during growth on a solid substrate, this results in penetration of cells into the agar medium. An example of this process is found in Saccharomyces cerevisiae.
    GO:0017148    negative regulation of translation    Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
    GO:2001125    negative regulation of translational frameshifting    Any process that stops, prevents or reduces the frequency, rate or extent of translational frameshifting.
    GO:0050790    regulation of catalytic activity    Any process that modulates the activity of an enzyme.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0022627    cytosolic small ribosomal subunit    The small subunit of a ribosome located in the cytosol.

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  Sites
(no "Sites" information available for 3rfh)
 
  Cis Peptide Bonds
    Asp A:266 - Pro A:267   [ RasMol ]  
    Asp A:51 - Gln A:52   [ RasMol ]  
    Asp B:266 - Pro B:267   [ RasMol ]  
    Asp C:266 - Pro C:267   [ RasMol ]  
    Asp D:266 - Pro D:267   [ RasMol ]  
 
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  3rfh
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  GBLP_YEAST | P38011
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GBLP_YEAST | P38011: 1trj 3frx 3j6x 3j6y 3j77 3j78 3rfg 4u3m 4u3n 4u3u 4u4n 4u4o 4u4q 4u4r 4u4u 4u4y 4u4z 4u50 4u51 4u52 4u53 4u55 4u56 4u6f 4v6i 4v7r 4v88 4v8y 4v8z 4v92 5dat 5dc3 5dge 5dgf 5dgv 5fci 5fcj 5i4l 5juo 5jup 5jus 5jut 5juu 5lyb 5m1j 5mc6 5tga 5tgm

(-) Related Entries Specified in the PDB File

1trj 3dm0 3frx 3rfg