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3RFH
Asym. Unit
Info
Asym.Unit (190 KB)
Biol.Unit 1 (93 KB)
Biol.Unit 2 (96 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE YEAST RACK1 DIMER IN SPACE GROUP P21
Authors
:
L. Yatime, K. L. Hein, J. Nilsson, P. Nissen
Date
:
06 Apr 11 (Deposition) - 06 Jul 11 (Release) - 26 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Beta-Propeller, Dimer, Signaling Protein
(Keyword Search:
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Reference
:
L. Yatime, K. L. Hein, J. Nilsson, P. Nissen
Structure Of The Rack1 Dimer From Saccharomyces Cerevisiae
J. Mol. Biol. V. 411 486 2011
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 12)
Info
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1: WD_REPEATS_1 (A:80-94,B:80-94,C:80-94,D:80-94|A:...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
WD_REPEATS_1
PS00678
Trp-Asp (WD) repeats signature.
GBLP_YEAST
80-94
169-183
211-225
12
A:80-94
B:80-94
C:80-94
D:80-94
A:183-183
B:183-183
C:183-183
D:169-183
A:211-225
B:211-225
C:211-225
D:211-225
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Exons
(2, 8)
Info
All Exons
Exon 1.1 (A:3-158 | B:3-157 | C:6-161 | D:5-...)
Exon 1.2 (A:183-317 | B:183-317 | C:183-316 ...)
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1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YMR116C
1
YMR116C.1
XIII:500687-500151
537
GBLP_YEAST
1-179
179
4
A:3-158
B:3-157
C:6-161
D:5-179 (gaps)
156
155
156
175
1.2
YMR116C
2
YMR116C.2
XIII:499877-499455
423
GBLP_YEAST
180-319
140
4
A:183-317
B:183-317
C:183-316 (gaps)
D:180-316
135
135
134
137
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SCOP Domains
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Pfam Domains
(1, 24)
Info
all PFAM domains
1a: PFAM_WD40_3rfhD01 (D:290-314)
1b: PFAM_WD40_3rfhD02 (D:290-314)
1c: PFAM_WD40_3rfhD03 (D:290-314)
1d: PFAM_WD40_3rfhD04 (D:290-314)
1e: PFAM_WD40_3rfhD05 (D:290-314)
1f: PFAM_WD40_3rfhD06 (D:290-314)
1g: PFAM_WD40_3rfhD07 (D:290-314)
1h: PFAM_WD40_3rfhD08 (D:290-314)
1i: PFAM_WD40_3rfhD09 (D:290-314)
1j: PFAM_WD40_3rfhD10 (D:290-314)
1k: PFAM_WD40_3rfhD11 (D:290-314)
1l: PFAM_WD40_3rfhD12 (D:290-314)
1m: PFAM_WD40_3rfhD13 (D:290-314)
1n: PFAM_WD40_3rfhD14 (D:290-314)
1o: PFAM_WD40_3rfhD15 (D:290-314)
1p: PFAM_WD40_3rfhD16 (D:290-314)
1q: PFAM_WD40_3rfhD17 (D:290-314)
1r: PFAM_WD40_3rfhD18 (D:290-314)
1s: PFAM_WD40_3rfhD19 (D:290-314)
1t: PFAM_WD40_3rfhD20 (D:290-314)
1u: PFAM_WD40_3rfhD21 (D:290-314)
1v: PFAM_WD40_3rfhD22 (D:290-314)
1w: PFAM_WD40_3rfhD23 (D:290-314)
1x: PFAM_WD40_3rfhD24 (D:290-314)
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Clan
:
Beta_propeller
(192)
Family
:
WD40
(64)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(18)
1a
WD40-3rfhD01
D:290-314
1b
WD40-3rfhD02
D:290-314
1c
WD40-3rfhD03
D:290-314
1d
WD40-3rfhD04
D:290-314
1e
WD40-3rfhD05
D:290-314
1f
WD40-3rfhD06
D:290-314
1g
WD40-3rfhD07
D:290-314
1h
WD40-3rfhD08
D:290-314
1i
WD40-3rfhD09
D:290-314
1j
WD40-3rfhD10
D:290-314
1k
WD40-3rfhD11
D:290-314
1l
WD40-3rfhD12
D:290-314
1m
WD40-3rfhD13
D:290-314
1n
WD40-3rfhD14
D:290-314
1o
WD40-3rfhD15
D:290-314
1p
WD40-3rfhD16
D:290-314
1q
WD40-3rfhD17
D:290-314
1r
WD40-3rfhD18
D:290-314
1s
WD40-3rfhD19
D:290-314
1t
WD40-3rfhD20
D:290-314
1u
WD40-3rfhD21
D:290-314
1v
WD40-3rfhD22
D:290-314
1w
WD40-3rfhD23
D:290-314
1x
WD40-3rfhD24
D:290-314
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Asym.Unit (190 KB)
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