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(-) Description

Title :  CRYSTAL STRUCTURE OF 2-AMINO-2-DESOXYISOCHORISMATE SYNTHASE (ADIC) SYNTHASE PHZE FROM BURKHOLDERIA LATA 383 IN COMPLEX WITH BENZOATE, PYRUVATE, GLUTAMINE AND CONTAMINATING ZN2+
 
Authors :  Q. A. Li, D. V. Mavrodi, L. S. Thomashow, M. Roessle, W. Blankenfeldt
Date :  22 Mar 11  (Deposition) - 30 Mar 11  (Release) - 01 Jun 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ammonia Channel, Chorismate, Type 1 Glutamine Amidotransferase, Phenazine Biosynthesis, Lyase, Synthase, Biosynthetic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. A. Li, D. V. Mavrodi, L. S. Thomashow, M. Roessle, W. Blankenfeldt
Ligand Binding Induces An Ammonia Channel In 2-Amino-2-Desoxyisochorismate (Adic) Synthase Phze.
J. Biol. Chem. V. 286 18213 2011
PubMed-ID: 21454481  |  Reference-DOI: 10.1074/JBC.M110.183418

(-) Compounds

Molecule 1 - ANTHRANILATE/PARA-AMINOBENZOATE SYNTHASES COMPONENT I
    Chains: A, B
    EC Number: 4.1.3.27
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET19MODTEV
    Expression System Strain: ROSETTA 2 PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BCEP18194_B1570
    Organism Scientific: BURKHOLDERIA SP.
    Organism Taxid: 269483
    Strain: 383

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 13)

Asymmetric/Biological Unit (6, 13)
No.NameCountTypeFull Name
1BEZ2Ligand/IonBENZOIC ACID
2CYG2Mod. Amino Acid2-AMINO-4-(AMINO-3-OXO-PROPYLSULFANYLCARBONYL)-BUTYRICACID
3MG3Ligand/IonMAGNESIUM ION
4PO42Ligand/IonPHOSPHATE ION
5PYR2Ligand/IonPYRUVIC ACID
6ZN2Ligand/IonZINC ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:244 , GLU A:382 , BEZ A:701 , HOH A:774 , HOH A:791BINDING SITE FOR RESIDUE MG A 700
02AC2SOFTWAREILE A:216 , SER A:217 , GLY A:218 , THR A:219 , GLU A:244 , HIS A:279 , THR A:304 , ARG A:352 , THR A:369 , GLU A:382 , LYS A:386 , MG A:700 , PYR A:702BINDING SITE FOR RESIDUE BEZ A 701
03AC3SOFTWARETYR A:328 , ARG A:352 , VAL A:366 , GLY A:367 , LYS A:386 , BEZ A:701 , HOH A:756BINDING SITE FOR RESIDUE PYR A 702
04AC4SOFTWARESER A:27 , TYR A:183 , ARG A:202 , ARG A:272 , PHE A:283 , HOH A:666BINDING SITE FOR RESIDUE PO4 A 900
05AC5SOFTWARECYG A:526 , TYR A:566 , HIS A:611 , HOH A:665BINDING SITE FOR RESIDUE ZN A 950
06AC6SOFTWAREGLU B:244 , GLU B:382 , BEZ B:701 , HOH B:793 , HOH B:795BINDING SITE FOR RESIDUE MG B 700
07AC7SOFTWAREILE B:216 , SER B:217 , GLY B:218 , THR B:219 , GLU B:244 , HIS B:279 , THR B:304 , ARG B:352 , THR B:369 , GLU B:382 , LYS B:386 , MG B:700 , PYR B:702BINDING SITE FOR RESIDUE BEZ B 701
08AC8SOFTWARETYR B:328 , ARG B:352 , VAL B:366 , GLY B:367 , LYS B:386 , BEZ B:701 , HOH B:729BINDING SITE FOR RESIDUE PYR B 702
09AC9SOFTWARESER B:27 , TYR B:183 , ARG B:202 , ARG B:272 , PHE B:283 , HOH B:748BINDING SITE FOR RESIDUE PO4 B 900
10BC1SOFTWARECYG B:526 , TYR B:566 , HIS B:611 , HOH B:666BINDING SITE FOR RESIDUE ZN B 950

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3R75)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1Gly A:268 -Pro A:269
2Met A:300 -Phe A:301
3Ser A:308 -Pro A:309
4Gly B:268 -Pro B:269
5Met B:300 -Phe B:301
6Ser B:308 -Pro B:309
7Gly B:429 -Gly B:430

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3R75)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3R75)

(-) Exons   (0, 0)

(no "Exon" information available for 3R75)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:616
 aligned with Q396C7_BURL3 | Q396C7 from UniProtKB/TrEMBL  Length:643

    Alignment length:630
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636
         Q396C7_BURL3     7 RNLFDRVLHGQAPCFALIARSTGSAGERAMIDVFAGAVSYPSSLAELPLAAPTATGADRQELLVMVPYRQLHERGFKTHDDGAPLVAITCDEHETVSAQLALAAIPDADTALGERHFDIDDEAYAEIVERVITDEIGTGAGSNFVIKRTLEGDLDDYSPAKALAVFKRLMRREVGAYWIFVIHTGERTFVGATPERHLTLHEGCATMNPISGTYRYPQSGPTIDGINAFLGDRKESDELYMVLDEELKMMARICPAGGQVTGPHLREMARLAHTEYFIVGHTEADVRDLLRETMFAPTVTGSPIESATRVIARHERAGRGYYSGIAALIGRDARGGRTLDSAILIRTAEIDRAGHVRIGVGSTLVRHSDAVSEVMETHAKVAALSNAFDPPEAGPALGQHPSVQAALRERNEGIADFWFRPYGGRQGEMADELAELSGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAVDLARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAILGIPLVRREVPNQGIQVEIDLFGQRERVGFYNTYVAQTVRDEMDVDGVGTVAISRDPRTGEVHALRGPTFSSMQFHAESVLTVDGPRILGEAITHAIRREK 636
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhh.....eeeeee.------..eeeeee..ee...hhhhh...........eeeeeeeehhhhhhhhh..........eeee..eeeeeehhhhhhhh.......eeeee..hhhhhhhhhhhhhhhhhhhh...eee..eeeeee....hhhhhhhhhhhhhhhh....eeeeee...eeeeeee.....eee..eeee..eeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeee...eeeeeeeeeee...hhhhhhhhh..hhhh.eehhhhhhhhhhhhh.........eeeeeee.....eeeeeee...eeeee...eeeeee..ee....hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.....hhhhh.....--------......eeeeee...hhhhhhhhhhhhh..eeeeee.....hhhhh.eeee...........hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhh...eeeeeeeeeeeeeeeee..eeeeeeeeeeeee.....eeee...eeeeeee......eeeeee..eeee..........hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3r75 A   7 RNLFDRVLHGQAPCFALIARS------RAMIDVFAGAVSYPSSLAELPLAAPTATGADRQELLVMVPYRQLHERGFKTHDDGAPLVAITCDEHETVSAQLALAAIPDADTALGERHFDIDDEAYAEIVERVITDEIGTGAGSNFVIKRTLEGDLDDYSPAKALAVFKRLMRREVGAYWIFVIHTGERTFVGATPERHLTLHEGCATMNPISGTYRYPQSGPTIDGINAFLGDRKESDELYMVLDEELKMMARICPAGGQVTGPHLREMARLAHTEYFIVGHTEADVRDLLRETMFAPTVTGSPIESATRVIARHERAGRGYYSGIAALIGRDARGGRTLDSAILIRTAEIDRAGHVRIGVGSTLVRHSDAVSEVMETHAKVAALSNAFDPPEAGPALGQHPSVQAALRERNEGIADFWFRPYGGR--------AELSGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAVDLARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGKPFMAVcLSHQILNAILGIPLVRREVPNQGIQVEIDLFGQRERVGFYNTYVAQTVRDEMDVDGVGTVAISRDPRTGEVHALRGPTFSSMQFHAESVLTVDGPRILGEAITHAIRREK 636
                                    16        26|      |36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426    |    -   |   446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636
                                               27     34                                                                                                                                                                                                                                                                                                                                                                                                          431      440                                                                                   526-CYG                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:622
 aligned with Q396C7_BURL3 | Q396C7 from UniProtKB/TrEMBL  Length:643

    Alignment length:630
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636
         Q396C7_BURL3     7 RNLFDRVLHGQAPCFALIARSTGSAGERAMIDVFAGAVSYPSSLAELPLAAPTATGADRQELLVMVPYRQLHERGFKTHDDGAPLVAITCDEHETVSAQLALAAIPDADTALGERHFDIDDEAYAEIVERVITDEIGTGAGSNFVIKRTLEGDLDDYSPAKALAVFKRLMRREVGAYWIFVIHTGERTFVGATPERHLTLHEGCATMNPISGTYRYPQSGPTIDGINAFLGDRKESDELYMVLDEELKMMARICPAGGQVTGPHLREMARLAHTEYFIVGHTEADVRDLLRETMFAPTVTGSPIESATRVIARHERAGRGYYSGIAALIGRDARGGRTLDSAILIRTAEIDRAGHVRIGVGSTLVRHSDAVSEVMETHAKVAALSNAFDPPEAGPALGQHPSVQAALRERNEGIADFWFRPYGGRQGEMADELAELSGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAVDLARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAILGIPLVRREVPNQGIQVEIDLFGQRERVGFYNTYVAQTVRDEMDVDGVGTVAISRDPRTGEVHALRGPTFSSMQFHAESVLTVDGPRILGEAITHAIRREK 636
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhh.....eeeee..........eeeeee..ee...hhhhh...........eeeeeeeehhhhhhhhh..........eeee..eeeeeehhhhhhhh.......eeeee..hhhhhhhhhhhhhhhhhhhh...eee..eeeeee....hhhhhhhhhhhhhhhh....eeeeee....eeeeee..eeeeee..eeee..eeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeee...eeeeeeeeeee...hhhhhhhhh..hhhh.eehhhhhhhhhhhhh.........eeeeeee.....eeeeeee...eeee....eeeeee..ee....hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.....hhhhh.....--------......eeeeee...hhhhhhhhhhhhh..eeeeee.....hhhhh.eeee...........hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhh...eeeeeeeeeeeeeeeee..eeeeeeeeeeeee.....eeee...eeeeeee......eeeeee..eeee..........hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3r75 B   7 RNLFDRVLHGQAPCFALIARSTGSAGERAMIDVFAGAVSYPSSLAELPLAAPTATGADRQELLVMVPYRQLHERGFKTHDDGAPLVAITCDEHETVSAQLALAAIPDADTALGERHFDIDDEAYAEIVERVITDEIGTGAGSNFVIKRTLEGDLDDYSPAKALAVFKRLMRREVGAYWIFVIHTGERTFVGATPERHLTLHEGCATMNPISGTYRYPQSGPTIDGINAFLGDRKESDELYMVLDEELKMMARICPAGGQVTGPHLREMARLAHTEYFIVGHTEADVRDLLRETMFAPTVTGSPIESATRVIARHERAGRGYYSGIAALIGRDARGGRTLDSAILIRTAEIDRAGHVRIGVGSTLVRHSDAVSEVMETHAKVAALSNAFDPPEAGPALGQHPSVQAALRERNEGIADFWFRPYGGR--------AELSGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAVDLARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGKPFMAVcLSHQILNAILGIPLVRREVPNQGIQVEIDLFGQRERVGFYNTYVAQTVRDEMDVDGVGTVAISRDPRTGEVHALRGPTFSSMQFHAESVLTVDGPRILGEAITHAIRREK 636
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426    |    -   |   446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636
                                                                                                                                                                                                                                                                                                                                                                                                                                                                  431      440                                                                                   526-CYG
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3R75)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3R75)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3R75)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q396C7_BURL3 | Q396C7)
molecular function
    GO:0004049    anthranilate synthase activity    Catalysis of the reaction: chorismate + L-glutamine = anthranilate + pyruvate + L-glutamate.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

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  3r75
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  Q396C7_BURL3 | Q396C7
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  4.1.3.27
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q396C7_BURL3 | Q396C7: 3r74 3r76

(-) Related Entries Specified in the PDB File

3r74 3r76 3r77