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(-) Description

Title :  CRYSTAL STRUCTURE OF GC(8BRG)GCGGCGGC DUPLEX
 
Authors :  A. Kiliszek, R. Kierzek, W. J. Krzyzosiak, W. Rypniewski
Date :  10 Mar 11  (Deposition) - 01 Jun 11  (Release) - 14 Sep 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E  (2x)
Keywords :  Cgg Repeats, Fragile X Mental Retardation, 8-Bromoguanosine, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Kiliszek, R. Kierzek, W. J. Krzyzosiak, W. Rypniewski
Crystal Structures Of Cgg Rna Repeats With Implications For Fragile X-Associated Tremor Ataxia Syndrome.
Nucleic Acids Res. V. 39 7308 2011
PubMed-ID: 21596781  |  Reference-DOI: 10.1093/NAR/GKR368

(-) Compounds

Molecule 1 - RNA (5'-R(*GP*CP*(GRB)P*GP*CP*GP*GP*CP*GP*GP*C)-3')
    Chains: A, B, C, D, E
    Engineered: YES
    Other Details: THIS SEQUENCE IS FOUND IN HUMAN MRNA
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (1x): AB   
Biological Unit 2 (1x):   CD 
Biological Unit 3 (2x):     E

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric Unit (3, 15)
No.NameCountTypeFull Name
1BR2Ligand/IonBROMIDE ION
2GRB5Mod. Nucleotide8-BROMOGUANOSINE 5'-(DIHYDROGEN PHOSPHATE)
3SO48Ligand/IonSULFATE ION
Biological Unit 1 (2, 5)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
2GRB2Mod. Nucleotide8-BROMOGUANOSINE 5'-(DIHYDROGEN PHOSPHATE)
3SO43Ligand/IonSULFATE ION
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
2GRB2Mod. Nucleotide8-BROMOGUANOSINE 5'-(DIHYDROGEN PHOSPHATE)
3SO43Ligand/IonSULFATE ION
Biological Unit 3 (2, 6)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
2GRB2Mod. Nucleotide8-BROMOGUANOSINE 5'-(DIHYDROGEN PHOSPHATE)
3SO44Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGRB A:3 , G B:9 , HOH B:60BINDING SITE FOR RESIDUE BR A 12
02AC2SOFTWAREC A:5 , G A:6 , HOH A:18BINDING SITE FOR RESIDUE SO4 A 13
03AC3SOFTWAREC A:2 , GRB A:3 , HOH A:38 , HOH A:93BINDING SITE FOR RESIDUE SO4 A 14
04AC4SOFTWAREGRB B:3BINDING SITE FOR RESIDUE BR B 12
05AC5SOFTWAREC B:2 , GRB B:3 , HOH B:15BINDING SITE FOR RESIDUE SO4 B 13
06AC6SOFTWAREC C:2 , GRB C:3 , HOH C:183BINDING SITE FOR RESIDUE SO4 C 12
07AC7SOFTWAREC C:5 , G C:6 , HOH C:184BINDING SITE FOR RESIDUE SO4 C 13
08AC8SOFTWAREC D:2 , GRB D:3 , HOH D:70 , HOH D:152 , HOH D:186 , HOH D:220BINDING SITE FOR RESIDUE SO4 D 12
09AC9SOFTWAREC E:2 , GRB E:3 , HOH E:207BINDING SITE FOR RESIDUE SO4 E 12
10BC1SOFTWAREC E:5 , G E:6BINDING SITE FOR RESIDUE SO4 E 13

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3R1D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3R1D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:RNA  Length:11
                                          
                  3r1d A  1 GCgGCGGCGGC 11
                              |     10 
                              |        
                              3-GRB    


Chain B from PDB  Type:RNA  Length:11
                                          
                  3r1d B  1 GCgGCGGCGGC 11
                              |     10 
                              3-GRB    


Chain C from PDB  Type:RNA  Length:11
                                          
                  3r1d C  1 GCgGCGGCGGC 11
                              |     10 
                              3-GRB    


Chain D from PDB  Type:RNA  Length:11
                                          
                  3r1d D  1 GCgGCGGCGGC 11
                              |     10 
                              3-GRB    


Chain E from PDB  Type:RNA  Length:11
                                          
                  3r1d E  1 GCgGCGGCGGC 11
                              |     10 
                              3-GRB
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 Classification and Annotation

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3r1c 3r1e