3QY8 - JenaLib

Title :   CRYSTAL STRUCTURES OF YWQE FROM BACILLUS SUBTILIS AND CPSB FROM STREPTOCOCCUS PNEUMONIAE, UNIQUE METAL-DEPENDENT TYROSINE PHOSPHATASES

Authors :   H. S. Kim, S. J. Lee, H. J. Yoon, D. R. An, D. J. Kim, S. -J. Kim, S. W. Suh

Date :   03 Mar 11 (Deposition) - 08 Jun 11 (Release) - 17 Aug 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A

Keywords :   Tim Barrel, Polymerase And Histindinol Phosphatase(Php)-Like Phosphatase, Phosphatase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. S. Kim, S. J. Lee, H. J. Yoon, D. R. An, D. J. Kim, S. J. Kim, S. W. Suh
Crystal Structures Of Ywqe From Bacillus Subtilis And Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases.
J. Struct. Biol. V. 175 442 2011
PubMed-ID: 21605684 | Reference-DOI: 10.1016/J.JSB.2011.05.007

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 6)

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:80 , GLU A:108 , HIS A:136 , ARG A:139 , FE A:253 , SO4 A:255 , HOH A:258 , HOH A:283	BINDING SITE FOR RESIDUE FE A 252
2	AC2	SOFTWARE	HIS A:5 , HIS A:7 , GLU A:80 , ASP A:199 , FE A:252 , SO4 A:255 , HOH A:258	BINDING SITE FOR RESIDUE FE A 253
3	AC3	SOFTWARE	ASP A:14 , HIS A:42 , HIS A:201 , SO4 A:255	BINDING SITE FOR RESIDUE MG A 254
4	AC4	SOFTWARE	HIS A:7 , ASP A:14 , HIS A:42 , GLU A:80 , GLU A:108 , ARG A:139 , ASP A:199 , HIS A:201 , ARG A:206 , FE A:252 , FE A:253 , MG A:254 , HOH A:258 , HOH A:283 , HOH A:381	BINDING SITE FOR RESIDUE SO4 A 255
5	AC5	SOFTWARE	ARG A:44 , SER A:110 , MET A:111	BINDING SITE FOR RESIDUE GOL A 256
6	AC6	SOFTWARE	ALA A:56 , PHE A:59 , ARG A:63 , TYR A:77 , HOH A:465	BINDING SITE FOR RESIDUE GOL A 257

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:243
 aligned with CPSB_STRPN | Q9AHD4 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:243
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240   
           CPSB_STRPN     1 MIDIHSHIVFDVDDGPKSREESKALLAESYRQGVRTIVSTSHRRKGMFETPEEKIAENFLQVREIAKEVASDLVIAYGAEIYYTPDVLDKLEKKRIPTLNDSRYALIEFSMNTPYRDIHSALSKILMLGITPVIAHIERYDALENNEKRVRELIDMGCYTQVNSSHVLKPKLFGERYKFMKKRAQYFLEQDLVHVIASDMHNLDGRPPHMAEAYDLVTQKYGEAKAQELFIDNPRKIVMDQLI 243
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..............hhhhhhhhhhhhhhh...eee...ee.......hhhhhhhhhhhhhhhhhhhh...eee...eee...hhhhhhhh....hhhhh.eeeee.....hhhhhhhhhhhhhhh..eeee.hhhhhhhhh.hhhhhhhhhhh..eeeee.hhh.........hhhhhhhhhhhhhh....eee...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qy8 A   1 MIDIHSHIVFDVDDGPKSREESKALLAESYRQGVRTIVSTSHRRKGMFETPEEKIAENFLQVREIAKEVASDLVIAYGAEIYYTPDVLDKLEKKRIPTLNDSRYALIEFSMNTPYRDIHSALSKILMLGITPVIAHIERYDALENNEKRVRELIDMGCYTQVNSSHVLKPKLFGERYKFMKKRAQYFLEQDLVHVIASDMHNLDGRPPHMAEAYDLVTQKYGEAKAQELFIDNPRKIVMDQLI 243
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (CPSB_STRPN | Q9AHD4)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0030145	manganese ion binding	Interacting selectively and non-covalently with manganese (Mn) ions.
	GO:0004721	phosphoprotein phosphatase activity	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.
	GO:0004725	protein tyrosine phosphatase activity	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
biological process
	GO:0045227	capsule polysaccharide biosynthetic process	The chemical reactions and pathways resulting in the formation of polysaccharides that make up the capsule, a protective structure surrounding some species of bacteria and fungi.
	GO:0035335	peptidyl-tyrosine dephosphorylation	The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine.
	GO:0000271	polysaccharide biosynthetic process	The chemical reactions and pathways resulting in the formation of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.
	GO:0006470	protein dephosphorylation	The process of removing one or more phosphoric residues from a protein.

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	3qy8
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