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(-) Description

Title :  CRYSTAL STRUCTURE OF THE TYROSINE PHOSPHATASE CPS4B FROM STEPTOCOCCUS PNEUMONIAE TIGR4.
 
Authors :  G. Hagelueken, H. Huang, J. H. Naismith
Date :  25 May 09  (Deposition) - 14 Jul 09  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Capsule Biogenesis/Degradation, Manganese, Hydrolase, Phosphatase, Protein Phosphatase, Exopolysaccharide Synthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Hagelueken, H. Huang, I. L. Mainprize, C. Whitfield, J. H. Naismith
Crystal Structures Of Wzb Of Escherichia Coli And Cpsb Of Streptococcus Pneumoniae, Representatives Of Two Families O Tyrosine Phosphatases That Regulate Capsule Assembly.
J. Mol. Biol. V. 392 678 2009
PubMed-ID: 19616007  |  Reference-DOI: 10.1016/J.JMB.2009.07.026

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN PHOSPHATASE CPSB
    Chains: A
    EC Number: 3.1.3.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ROSETTA
    Expression System Taxid: 562
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 1313
    Strain: TIGR 4
    Synonym: CPS4B

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric Unit (3, 10)
No.NameCountTypeFull Name
1MN3Ligand/IonMANGANESE (II) ION
2SM2Ligand/IonSAMARIUM (III) ION
3SO45Ligand/IonSULFATE ION
Biological Unit 1 (1, 10)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2SM-1Ligand/IonSAMARIUM (III) ION
3SO410Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:63 , ARG A:103 , LYS A:178 , GLN A:241 , LEU A:242BINDING SITE FOR RESIDUE SO4 A 1244
02AC2SOFTWARETYR A:115 , ARG A:149BINDING SITE FOR RESIDUE SO4 A 1245
03AC3SOFTWAREARG A:149BINDING SITE FOR RESIDUE SO4 A 1246
04AC4SOFTWAREARG A:44 , SER A:110 , MET A:111 , SER A:123 , ARG A:139 , HOH A:2038BINDING SITE FOR RESIDUE SO4 A 1247
05AC5SOFTWARESER A:18 , ARG A:19 , GLU A:20 , HOH A:2071BINDING SITE FOR RESIDUE SO4 A 1248
06AC6SOFTWAREGLU A:80 , GLU A:108 , HIS A:136 , MN A:1250 , HOH A:2036 , HOH A:2072BINDING SITE FOR RESIDUE MN A 1249
07AC7SOFTWAREHIS A:5 , HIS A:7 , GLU A:80 , ASP A:199 , MN A:1249 , HOH A:2072BINDING SITE FOR RESIDUE MN A 1250
08AC8SOFTWAREGLU A:147 , GLN A:190BINDING SITE FOR RESIDUE SM A 1251
09AC9SOFTWAREASP A:191 , LYS A:225BINDING SITE FOR RESIDUE SM A 1252
10BC1SOFTWAREASP A:14 , HIS A:42 , HIS A:201 , ARG A:206 , HOH A:2073BINDING SITE FOR RESIDUE MN A 1253

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WJD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2WJD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WJD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WJD)

(-) Exons   (0, 0)

(no "Exon" information available for 2WJD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:244
 aligned with CPSB_STRPN | Q9AHD4 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:244
                             1                                                                                                                                                                                                                                                  
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239    
           CPSB_STRPN     - -MIDIHSHIVFDVDDGPKSREESKALLAESYRQGVRTIVSTSHRRKGMFETPEEKIAENFLQVREIAKEVASDLVIAYGAEIYYTPDVLDKLEKKRIPTLNDSRYALIEFSMNTPYRDIHSALSKILMLGITPVIAHIERYDALENNEKRVRELIDMGCYTQVNSSHVLKPKLFGERYKFMKKRAQYFLEQDLVHVIASDMHNLDGRPPHMAEAYDLVTQKYGEAKAQELFIDNPRKIVMDQLI 243
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..............hhhhhhhhhhhhhhh.eeeee...ee.......hhhhhhhhhhhhhhhhhhhh...eee...eee...hhhhhhhh....hhhhh.eeeee.....hhhhhhhhhhhhhh...eeee.hhhhhhhhh.hhhhhhhhhhhh.eeeee.hhh.........hhhhhhhhhhhhhh....eee...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wjd A   0 GMIDIHSHIVFDVDDGPKSREESKALLAESYRQGVRTIVSTSHRRKGMFETPEEKIAENFLQVREIAKEVASDLVIAYGAEIYYTPDVLDKLEKKRIPTLNDSRYALIEFSMNTPYRDIHSALSKILMLGITPVIAHIERYDALENNEKRVRELIDMGCYTQVNSSHVLKPKLFGERYKFMKKRAQYFLEQDLVHVIASDMHNLDGRPPHMAEAYDLVTQKYGEAKAQELFIDNPRKIVMDQLI 243
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WJD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WJD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2WJD)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A   (CPSB_STRPN | Q9AHD4)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0030145    manganese ion binding    Interacting selectively and non-covalently with manganese (Mn) ions.
    GO:0004721    phosphoprotein phosphatase activity    Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.
    GO:0004725    protein tyrosine phosphatase activity    Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
biological process
    GO:0045227    capsule polysaccharide biosynthetic process    The chemical reactions and pathways resulting in the formation of polysaccharides that make up the capsule, a protective structure surrounding some species of bacteria and fungi.
    GO:0035335    peptidyl-tyrosine dephosphorylation    The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine.
    GO:0000271    polysaccharide biosynthetic process    The chemical reactions and pathways resulting in the formation of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.
    GO:0006470    protein dephosphorylation    The process of removing one or more phosphoric residues from a protein.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CPSB_STRPN | Q9AHD4: 2wje 2wjf 3qy8

(-) Related Entries Specified in the PDB File

2wje CRYSTAL STRUCTURE OF THE TYROSINE PHOSPHATASE CPS4B FROM STEPTOCOCCUS PNEUMONIAE TIGR4.
2wjf CRYSTAL STRUCTURE OF THE TYROSINE PHOSPHATASE CPS4B FROM STEPTOCOCCUS PNEUMONIAE TIGR4 IN COMPLEX WITH PHOSPHATE.