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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN N12-I15, AN ADCC AND NON-NEUTRALIZING ANTI-HIV-1 ENV ANTIBODY
 
Authors :  Y. Guan, A. L. Devico, G. K. Lewis, M. Pazgier
Date :  20 Jan 11  (Deposition) - 25 Jan 12  (Release) - 25 Jan 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.59
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Adcc And Non-Neutralizing Anti-Hiv-1 Env Antibody N12-I15, Cd4I Antibody, Fab Fragment, Binds To Viral Glycoprotein Gp120, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Guan, A. L. Devico, G. K. Lewis, M. Pazgier
Crystal Structure Of Human N12-I15, An Adcc And Non-Neutralizing Anti-Hiv-1 Env Antibody
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - FAB FRAGMENT OF HUMAN ANTI-HIV-1 ENV ANTIBODY N12-I15, HEAVY CHAIN
    Chains: A, C, E, G
    Fragment: FAB HEAVY CHAIN
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - FAB FRAGMENT OF HUMAN ANTI-HIV-1 ENV ANTIBODY N12-I15,LIGHT CHAIN
    Chains: B, D, F, H
    Fragment: FAB LIGHT CHAIN
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 17)

Asymmetric Unit (3, 17)
No.NameCountTypeFull Name
1CL10Ligand/IonCHLORIDE ION
2GOL4Ligand/IonGLYCEROL
3SO43Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL-1Ligand/IonGLYCEROL
3SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3SO4-1Ligand/IonSULFATE ION
Biological Unit 3 (2, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL
3SO41Ligand/IonSULFATE ION
Biological Unit 4 (2, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3SO41Ligand/IonSULFATE ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR E:33 , ASN E:52 , ARG E:54 , ARG E:99 , GLY E:100ABINDING SITE FOR RESIDUE SO4 E 221
02AC2SOFTWARETYR G:33 , ASN G:52 , ARG G:54 , ARG G:99 , GLY G:100ABINDING SITE FOR RESIDUE SO4 G 221
03AC3SOFTWARETYR A:33 , ASN A:52 , ARG A:54 , ARG A:99 , GLY A:100ABINDING SITE FOR RESIDUE SO4 A 221
04AC4SOFTWARELYS D:39 , GLN D:45 , VAL D:58 , PHE D:62 , ASP D:82BINDING SITE FOR RESIDUE GOL D 214
05AC5SOFTWAREPHE E:32 , ARG E:94 , HOH E:230BINDING SITE FOR RESIDUE GOL E 222
06AC6SOFTWARELYS F:39 , GLN F:45 , PHE F:62 , GLU F:81 , ASP F:82 , HOH F:425BINDING SITE FOR RESIDUE GOL F 214
07AC7SOFTWARELEU H:37 , LYS H:39 , GLN H:45 , GLY H:57 , ASP H:82BINDING SITE FOR RESIDUE GOL H 214
08AC8SOFTWARETYR C:33 , ASN C:52BINDING SITE FOR RESIDUE CL C 221
09AC9SOFTWAREHIS B:60BINDING SITE FOR RESIDUE CL B 214
10BC1SOFTWAREARG A:94BINDING SITE FOR RESIDUE CL A 222
11BC2SOFTWAREHIS H:60BINDING SITE FOR RESIDUE CL H 215
12BC3SOFTWAREARG C:94BINDING SITE FOR RESIDUE CL C 222
13BC4SOFTWAREHOH F:446 , ARG G:94BINDING SITE FOR RESIDUE CL G 222
14BC5SOFTWARELEU F:9BINDING SITE FOR RESIDUE CL F 215
15BC6SOFTWARETHR D:69BINDING SITE FOR RESIDUE CL D 215

(-) SS Bonds  (16, 16)

Asymmetric Unit
No.Residues
1A:22 -A:92
2A:140 -A:196
3B:23 -B:88
4B:133 -B:193
5C:22 -C:92
6C:140 -C:196
7D:23 -D:88
8D:133 -D:193
9E:22 -E:92
10E:140 -E:196
11F:23 -F:88
12F:133 -F:193
13G:22 -G:92
14G:140 -G:196
15H:23 -H:88
16H:133 -H:193

(-) Cis Peptide Bonds  (22, 22)

Asymmetric Unit
No.Residues
1Phe A:146 -Pro A:147
2Glu A:148 -Pro A:149
3Lys A:201 -Pro A:202
4Pro A:202 -Ser A:203
5Ser B:7 -Pro B:8
6Tyr B:139 -Pro B:140
7Phe C:146 -Pro C:147
8Glu C:148 -Pro C:149
9Lys C:201 -Pro C:202
10Pro C:202 -Ser C:203
11Ser D:7 -Pro D:8
12Tyr D:139 -Pro D:140
13Phe E:146 -Pro E:147
14Glu E:148 -Pro E:149
15Lys E:201 -Pro E:202
16Pro E:202 -Ser E:203
17Ser F:7 -Pro F:8
18Tyr F:139 -Pro F:140
19Phe G:146 -Pro G:147
20Glu G:148 -Pro G:149
21Ser H:7 -Pro H:8
22Leu H:124 -Lys H:125

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3QEH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3QEH)

(-) Exons   (0, 0)

(no "Exon" information available for 3QEH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhh.eeeeee......eeeeee......eeehhhhhh.eeeeee....eeeeee...hhhhheeeeeeee............eeee...eeeee........eeeee...eeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeehhhhh....eeeeeee...eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3qeh A    1 QVQLVQSGAEVRKPGASVTVSCKTSGYTFVNFYIVWVRQAPGQGLEWMGVINPFRGDTYFAQKFKGRVTLTRDTSTSTVFMELSSLRSDDTAIYYCARDLEMRDGNNHGSHLEFWGQGTLVTVSSASTKGPSVFPLAPTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVE  212
                                    10        20        30        40        50  |     59        69        79   |||  86        96    ||100F||     108       118       136       146       156       166       176       186       196       206      
                                                                              52A                            82A||               100A|||||||                       126|                                                                             
                                                                                                              82B|                100B||||||                        135                                                                             
                                                                                                               82C                 100C|||||                                                                                                        
                                                                                                                                    100D||||                                                                                                        
                                                                                                                                     100E|||                                                                                                        
                                                                                                                                      100F||                                                                                                        
                                                                                                                                       100G|                                                                                                        
                                                                                                                                        100H                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                        
               SCOP domains d3qehb1 B:1-106 automated matches                                                                              d3qehb2 B:107-210 automated matches                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee............eeeeee.....eeeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee.....ee...eeeee.......eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhhhh.eeeeeee.......eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3qeh B    1 DIVMTQSPLSLPVTPGEAASISCRSSQSLLHTNGFQYLDWYLQKPGQSPQLLIYLGSNRATGVPHRFSGSGSGTEFTLKISRVEAEDVGVYYCMQAKESPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR  210
                                    10        20       27C||      35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205     
                                                     27A||||                                                                                                                                                                                       
                                                      27B|||                                                                                                                                                                                       
                                                       27C||                                                                                                                                                                                       
                                                        27D|                                                                                                                                                                                       
                                                         27E                                                                                                                                                                                       


Chain C from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                      
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee......eeehhhhhh.eeeeee....eeeeee...hhhhheeeeeeee............eeee...eeeee........eeeee...eeeeeeeeee.....eeee........eee...ee.....eeeeeeeee......eeeeee.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3qeh C    1 QVQLVQSGAEVRKPGASVTVSCKTSGYTFVNFYIVWVRQAPGQGLEWMGVINPFRGDTYFAQKFKGRVTLTRDTSTSTVFMELSSLRSDDTAIYYCARDLEMRDGNNHGSHLEFWGQGTLVTVSSASTKGPSVFPLAPTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSQTYICNVNHKPSNTKVDKRVE  212
                                    10        20        30        40        50  |     59        69        79   |||  86        96    ||100F||     108       118       136       146       156       166       176       186 ||    199       209   
                                                                              52A                            82A||               100A|||||||                       126|                                                  188|                    
                                                                                                              82B|                100B||||||                        135                                                   192                    
                                                                                                               82C                 100C|||||                                                                                                     
                                                                                                                                    100D||||                                                                                                     
                                                                                                                                     100E|||                                                                                                     
                                                                                                                                      100F||                                                                                                     
                                                                                                                                       100G|                                                                                                     
                                                                                                                                        100H                                                                                                     


Chain D from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                        
               SCOP domains d3qehd1 D:1-106 automated matches                                                                              d3qehd2 D:107-210 automated matches                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee............eeeeee.....eeeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee.....ee...eeeee.......eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhhh..eeeeeee.......eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3qeh D    1 DIVMTQSPLSLPVTPGEAASISCRSSQSLLHTNGFQYLDWYLQKPGQSPQLLIYLGSNRATGVPHRFSGSGSGTEFTLKISRVEAEDVGVYYCMQAKESPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR  210
                                    10        20       27C||      35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205     
                                                     27A||||                                                                                                                                                                                       
                                                      27B|||                                                                                                                                                                                       
                                                       27C||                                                                                                                                                                                       
                                                        27D|                                                                                                                                                                                       
                                                         27E                                                                                                                                                                                       


Chain E from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhh.eeeeee......eeeeee......eee.hhhh..eeeeee....eeeeee...hhhhheeeeeeee............eeee...eeeee........eeeee...eeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeee........eeeeee...eeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3qeh E    1 QVQLVQSGAEVRKPGASVTVSCKTSGYTFVNFYIVWVRQAPGQGLEWMGVINPFRGDTYFAQKFKGRVTLTRDTSTSTVFMELSSLRSDDTAIYYCARDLEMRDGNNHGSHLEFWGQGTLVTVSSASTKGPSVFPLAPTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLQTYICNVNHKPSNTKVDKRVE  212
                                    10        20        30        40        50  |     59        69        79   |||  86        96    ||100F||     108       118       136       146       156       166       176       186  ||   198       208    
                                                                              52A                            82A||               100A|||||||                       126|                                                   189|                    
                                                                                                              82B|                100B||||||                        135                                                    192                    
                                                                                                               82C                 100C|||||                                                                                                      
                                                                                                                                    100D||||                                                                                                      
                                                                                                                                     100E|||                                                                                                      
                                                                                                                                      100F||                                                                                                      
                                                                                                                                       100G|                                                                                                      
                                                                                                                                        100H                                                                                                      


Chain F from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                     
               SCOP domains d3qehf1 F:1-106 automated matches                                                                              d3qehf2 F:107-210 automated matches                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee............eeeeee.....eeeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee.....ee...eeeee.......eeeee..hhhhhh..eeeeeeeeeee.....eee........eeeee.........eeeeeeeeeehhhhhhh.eeeeeee.......eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3qeh F    1 DIVMTQSPLSLPVTPGEAASISCRSSQSLLHTNGFQYLDWYLQKPGQSPQLLIYLGSNRATGVPHRFSGSGSGTEFTLKISRVEAEDVGVYYCMQAKESPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR  210
                                    10        20       27C||      35        45        55        65        75        85        95       105       115       125       135       145 ||    158       168       178       188       198       208  
                                                     27A||||                                                                                                                     147|                                                           
                                                      27B|||                                                                                                                      151                                                           
                                                       27C||                                                                                                                                                                                    
                                                        27D|                                                                                                                                                                                    
                                                         27E                                                                                                                                                                                    


Chain G from PDB  Type:PROTEIN  Length:192
                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhh.eeeeee......eeeeee......eee.hhhh..eeeeee....eeeeee...hhhhheeeeeeee............eeee...eeeee.........eeee..eeeeeee.................eee...ee....eeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3qeh G    1 QVQLVQSGAEVRKPGASVTVSCKTSGYTFVNFYIVWVRQAPGQGLEWMGVINPFRGDTYFAQKFKGRVTLTRDTSTSTVFMELSSLRSDDTAIYYCARDLEMRDGNNHGSHLEFWGQGTLVTVSSASTKGPSVFPLATAALGCLVKYFPEPVTVSWNGATSGVHTFPAVLQSSLYSLSSVVTVPTYICNNHK  201
                                    10        20        30        40        50  |     59        69        79   |||  86        96    ||100F||     108       118      |137     ||148      |160       170  ||   181   ||  199  
                                                                              52A                            82A||               100A|||||||                      125|     143|       155|||          173|       185| 197|  
                                                                                                              82B|                100B||||||                       135      145        157||           175        193  199  
                                                                                                               82C                 100C|||||                                            158|                                
                                                                                                                                    100D||||                                             160                                
                                                                                                                                     100E|||                                                                                
                                                                                                                                      100F||                                                                                
                                                                                                                                       100G|                                                                                
                                                                                                                                        100H                                                                                


Chain H from PDB  Type:PROTEIN  Length:193
                                                                                                                                                                                                                                  
               SCOP domains d3qehh1 H:2-106 automated matches                                                                             d3qehh2 H:107-210 automated matches                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeee.....eeeeeee............eeeeee.....eeeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee.....ee...eeeee.......eeeee..........eeeeeee...........eeee.........eeeeee..hhhhh.eeee......eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3qeh H    2 IVMTQSPLSLPVTPGEAASISCRSSQSLLHTNGFQYLDWYLQKPGQSPQLLIYLGSNRATGVPHRFSGSGSGTEFTLKISRVEAEDVGVYYCMQAKESPTFGQGTKVEIKRTVAAPSVFIFPPDEQLKSSVVCLLNNFPREQWKQSGNSQESVTEQDSKDSTYSLSSTLADYEKHYACEVTHQGLPVTKSFNR  210
                                    11        21      |27D|       36        46        56        66        76        86        96       106       116  ||   130       141|| ||  159       169       183    || 195    || 207   
                                                    27A||||                                                                                         119|  126|     138| || ||                     178|  188|      200|       
                                                     27B|||                                                                                          121   130      140 || ||                      183   191       203       
                                                      27C||                                                                                                           142| ||                                                
                                                       27D|                                                                                                            146 ||                                                
                                                        27E                                                                                                              148|                                                
                                                                                                                                                                          154
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3QEH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3QEH)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3QEH)

 Visualization

(-) Interactive Views

Asymmetric Unit
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  Cis Peptide Bonds
    Glu A:148 - Pro A:149   [ RasMol ]  
    Glu C:148 - Pro C:149   [ RasMol ]  
    Glu E:148 - Pro E:149   [ RasMol ]  
    Glu G:148 - Pro G:149   [ RasMol ]  
    Leu H:124 - Lys H:125   [ RasMol ]  
    Lys A:201 - Pro A:202   [ RasMol ]  
    Lys C:201 - Pro C:202   [ RasMol ]  
    Lys E:201 - Pro E:202   [ RasMol ]  
    Phe A:146 - Pro A:147   [ RasMol ]  
    Phe C:146 - Pro C:147   [ RasMol ]  
    Phe E:146 - Pro E:147   [ RasMol ]  
    Phe G:146 - Pro G:147   [ RasMol ]  
    Pro A:202 - Ser A:203   [ RasMol ]  
    Pro C:202 - Ser C:203   [ RasMol ]  
    Pro E:202 - Ser E:203   [ RasMol ]  
    Ser B:7 - Pro B:8   [ RasMol ]  
    Ser D:7 - Pro D:8   [ RasMol ]  
    Ser F:7 - Pro F:8   [ RasMol ]  
    Ser H:7 - Pro H:8   [ RasMol ]  
    Tyr B:139 - Pro B:140   [ RasMol ]  
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  3qeh
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 Related Entries

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3qeg CRYSTAL STRUCTURE OF HUMAN N12-I2 FAB, AN ADCC AND NEUTRALIZING ANTI-HIV-1 ENV ANTIBODY