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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN N12-I15, AN ADCC AND NON-NEUTRALI HIV-1 ENV ANTIBODY
Keywords ADCC AND NON-NEUTRALIZING ANTI-HIV-1 ENV ANTIBODY N12-I15, C ANTIBODY, FAB FRAGMENT, BINDS TO VIRAL GLYCOPROTEIN GP120, SYSTEM
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3QEH     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   FAB FRAGMENT OF HUMAN ANTI-HIV-1 ENV ANTIBODY N12 HEAVY CHAIN  A 216 1649 0
2  Protein   FAB FRAGMENT OF HUMAN ANTI-HIV-1 ENV ANTIBODY N12 CHAIN  B 215 1655 0
3  Protein   FAB FRAGMENT OF HUMAN ANTI-HIV-1 ENV ANTIBODY N12 HEAVY CHAIN  C 213 1630 0
4  Protein   FAB FRAGMENT OF HUMAN ANTI-HIV-1 ENV ANTIBODY N12 CHAIN  D 215 1655 0
5  Protein   FAB FRAGMENT OF HUMAN ANTI-HIV-1 ENV ANTIBODY N12 HEAVY CHAIN  E 214 1638 0
6  Protein   FAB FRAGMENT OF HUMAN ANTI-HIV-1 ENV ANTIBODY N12 CHAIN  F 212 1631 0
7  Protein   FAB FRAGMENT OF HUMAN ANTI-HIV-1 ENV ANTIBODY N12 HEAVY CHAIN  G 192 1475 0
8  Protein   FAB FRAGMENT OF HUMAN ANTI-HIV-1 ENV ANTIBODY N12 CHAIN  H 193 1498 0
9  Ligand   FAB FRAGMENT OF HUMAN ANTI-HIV-1 ENV ANTIBODY N12 HEAVY CHAIN  A 2 0 6
10  Ligand   FAB FRAGMENT OF HUMAN ANTI-HIV-1 ENV ANTIBODY N12 CHAIN  B 3 0 3
11  Ligand   FAB FRAGMENT OF HUMAN ANTI-HIV-1 ENV ANTIBODY N12 HEAVY CHAIN  C 2 0 2
12  Ligand   FAB FRAGMENT OF HUMAN ANTI-HIV-1 ENV ANTIBODY N12 CHAIN  D 2 0 7
13  Ligand   FAB FRAGMENT OF HUMAN ANTI-HIV-1 ENV ANTIBODY N12 HEAVY CHAIN  E 2 0 11
14  Ligand   FAB FRAGMENT OF HUMAN ANTI-HIV-1 ENV ANTIBODY N12 CHAIN  F 2 0 7
15  Ligand   FAB FRAGMENT OF HUMAN ANTI-HIV-1 ENV ANTIBODY N12 HEAVY CHAIN  G 2 0 6
16  Ligand   FAB FRAGMENT OF HUMAN ANTI-HIV-1 ENV ANTIBODY N12 CHAIN  H 2 0 7
17 Water     566 0 566
total       2253 12831 615

Proteins
Unit 1 GLN1 VAL2 GLN3 LEU4 VAL5 GLN6 SER7 GLY8 ALA9 GLU10 VAL11 ARG12 LYS13 PRO14 GLY15 ALA16 SER17 VAL18 THR19 VAL20 SER21 CYS22 LYS23 THR24 SER25 GLY26 TYR27 THR28 PHE29 VAL30 ASN31 PHE32 TYR33 ILE34 VAL35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 GLN43 GLY44 LEU45 GLU46 TRP47 MET48 GLY49 VAL50 ILE51 ASN52 PRO52A PHE53 ARG54 GLY55 ASP56 THR57 TYR58 PHE59 ALA60 GLN61 LYS62 PHE63 LYS64 GLY65 ARG66 VAL67 THR68 LEU69 THR70 ARG71 ASP72 THR73 SER74 THR75 SER76 THR77 VAL78 PHE79 MET80 GLU81 LEU82 SER82A SER82B LEU82C ARG83 SER84 ASP85 ASP86 THR87 ALA88 ILE89 TYR90 TYR91 CYS92 ALA93 ARG94 ASP95 LEU96 GLU97 MET98 ARG99 ASP100 GLY100A ASN100B ASN100C HIS100D GLY100E SER100F HIS100G LEU100H GLU101 PHE102 TRP103 GLY104 GLN105 GLY106 THR107 LEU108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 SER187 SER188 LEU189 GLY190 THR191 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 ARG210 VAL211 GLU212
Unit 2 ASP1 ILE2 VAL3 MET4 THR5 GLN6 SER7 PRO8 LEU9 SER10 LEU11 PRO12 VAL13 THR14 PRO15 GLY16 GLU17 ALA18 ALA19 SER20 ILE21 SER22 CYS23 ARG24 SER25 SER26 GLN27 SER27A LEU27B LEU27C HIS27D THR27E ASN28 GLY29 PHE30 GLN31 TYR32 LEU33 ASP34 TRP35 TYR36 LEU37 GLN38 LYS39 PRO40 GLY41 GLN42 SER43 PRO44 GLN45 LEU46 LEU47 ILE48 TYR49 LEU50 GLY51 SER52 ASN53 ARG54 ALA55 THR56 GLY57 VAL58 PRO59 HIS60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 GLU70 PHE71 THR72 LEU73 LYS74 ILE75 SER76 ARG77 VAL78 GLU79 ALA80 GLU81 ASP82 VAL83 GLY84 VAL85 TYR86 TYR87 CYS88 MET89 GLN90 ALA91 LYS92 GLU93 SER94 PRO95 THR96 PHE97 GLY98 GLN99 GLY100 THR101 LYS102 VAL103 GLU104 ILE105 LYS106 ARG107 THR108 VAL109 ALA110 ALA111 PRO112 SER113 VAL114 PHE115 ILE116 PHE117 PRO118 PRO119 SER120 ASP121 GLU122 GLN123 LEU124 LYS125 SER126 GLY127 THR128 ALA129 SER130 VAL131 VAL132 CYS133 LEU134 LEU135 ASN136 ASN137 PHE138 TYR139 PRO140 ARG141 GLU142 ALA143 LYS144 VAL145 GLN146 TRP147 LYS148 VAL149 ASP150 ASN151 ALA152 LEU153 GLN154 SER155 GLY156 ASN157 SER158 GLN159 GLU160 SER161 VAL162 THR163 GLU164 GLN165 ASP166 SER167 LYS168 ASP169 SER170 THR171 TYR172 SER173 LEU174 SER175 SER176 THR177 LEU178 THR179 LEU180 SER181 LYS182 ALA183 ASP184 TYR185 GLU186 LYS187 HIS188 LYS189 VAL190 TYR191 ALA192 CYS193 GLU194 VAL195 THR196 HIS197 GLN198 GLY199 LEU200 SER201 SER202 PRO203 VAL204 THR205 LYS206 SER207 PHE208 ASN209 ARG210
Unit 3 GLN1 VAL2 GLN3 LEU4 VAL5 GLN6 SER7 GLY8 ALA9 GLU10 VAL11 ARG12 LYS13 PRO14 GLY15 ALA16 SER17 VAL18 THR19 VAL20 SER21 CYS22 LYS23 THR24 SER25 GLY26 TYR27 THR28 PHE29 VAL30 ASN31 PHE32 TYR33 ILE34 VAL35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 GLN43 GLY44 LEU45 GLU46 TRP47 MET48 GLY49 VAL50 ILE51 ASN52 PRO52A PHE53 ARG54 GLY55 ASP56 THR57 TYR58 PHE59 ALA60 GLN61 LYS62 PHE63 LYS64 GLY65 ARG66 VAL67 THR68 LEU69 THR70 ARG71 ASP72 THR73 SER74 THR75 SER76 THR77 VAL78 PHE79 MET80 GLU81 LEU82 SER82A SER82B LEU82C ARG83 SER84 ASP85 ASP86 THR87 ALA88 ILE89 TYR90 TYR91 CYS92 ALA93 ARG94 ASP95 LEU96 GLU97 MET98 ARG99 ASP100 GLY100A ASN100B ASN100C HIS100D GLY100E SER100F HIS100G LEU100H GLU101 PHE102 TRP103 GLY104 GLN105 GLY106 THR107 LEU108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 SER187 SER188 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 ARG210 VAL211 GLU212
Unit 4 ASP1 ILE2 VAL3 MET4 THR5 GLN6 SER7 PRO8 LEU9 SER10 LEU11 PRO12 VAL13 THR14 PRO15 GLY16 GLU17 ALA18 ALA19 SER20 ILE21 SER22 CYS23 ARG24 SER25 SER26 GLN27 SER27A LEU27B LEU27C HIS27D THR27E ASN28 GLY29 PHE30 GLN31 TYR32 LEU33 ASP34 TRP35 TYR36 LEU37 GLN38 LYS39 PRO40 GLY41 GLN42 SER43 PRO44 GLN45 LEU46 LEU47 ILE48 TYR49 LEU50 GLY51 SER52 ASN53 ARG54 ALA55 THR56 GLY57 VAL58 PRO59 HIS60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 GLU70 PHE71 THR72 LEU73 LYS74 ILE75 SER76 ARG77 VAL78 GLU79 ALA80 GLU81 ASP82 VAL83 GLY84 VAL85 TYR86 TYR87 CYS88 MET89 GLN90 ALA91 LYS92 GLU93 SER94 PRO95 THR96 PHE97 GLY98 GLN99 GLY100 THR101 LYS102 VAL103 GLU104 ILE105 LYS106 ARG107 THR108 VAL109 ALA110 ALA111 PRO112 SER113 VAL114 PHE115 ILE116 PHE117 PRO118 PRO119 SER120 ASP121 GLU122 GLN123 LEU124 LYS125 SER126 GLY127 THR128 ALA129 SER130 VAL131 VAL132 CYS133 LEU134 LEU135 ASN136 ASN137 PHE138 TYR139 PRO140 ARG141 GLU142 ALA143 LYS144 VAL145 GLN146 TRP147 LYS148 VAL149 ASP150 ASN151 ALA152 LEU153 GLN154 SER155 GLY156 ASN157 SER158 GLN159 GLU160 SER161 VAL162 THR163 GLU164 GLN165 ASP166 SER167 LYS168 ASP169 SER170 THR171 TYR172 SER173 LEU174 SER175 SER176 THR177 LEU178 THR179 LEU180 SER181 LYS182 ALA183 ASP184 TYR185 GLU186 LYS187 HIS188 LYS189 VAL190 TYR191 ALA192 CYS193 GLU194 VAL195 THR196 HIS197 GLN198 GLY199 LEU200 SER201 SER202 PRO203 VAL204 THR205 LYS206 SER207 PHE208 ASN209 ARG210
Unit 5 GLN1 VAL2 GLN3 LEU4 VAL5 GLN6 SER7 GLY8 ALA9 GLU10 VAL11 ARG12 LYS13 PRO14 GLY15 ALA16 SER17 VAL18 THR19 VAL20 SER21 CYS22 LYS23 THR24 SER25 GLY26 TYR27 THR28 PHE29 VAL30 ASN31 PHE32 TYR33 ILE34 VAL35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 GLN43 GLY44 LEU45 GLU46 TRP47 MET48 GLY49 VAL50 ILE51 ASN52 PRO52A PHE53 ARG54 GLY55 ASP56 THR57 TYR58 PHE59 ALA60 GLN61 LYS62 PHE63 LYS64 GLY65 ARG66 VAL67 THR68 LEU69 THR70 ARG71 ASP72 THR73 SER74 THR75 SER76 THR77 VAL78 PHE79 MET80 GLU81 LEU82 SER82A SER82B LEU82C ARG83 SER84 ASP85 ASP86 THR87 ALA88 ILE89 TYR90 TYR91 CYS92 ALA93 ARG94 ASP95 LEU96 GLU97 MET98 ARG99 ASP100 GLY100A ASN100B ASN100C HIS100D GLY100E SER100F HIS100G LEU100H GLU101 PHE102 TRP103 GLY104 GLN105 GLY106 THR107 LEU108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 SER187 SER188 LEU189 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 ARG210 VAL211 GLU212
Unit 6 ASP1 ILE2 VAL3 MET4 THR5 GLN6 SER7 PRO8 LEU9 SER10 LEU11 PRO12 VAL13 THR14 PRO15 GLY16 GLU17 ALA18 ALA19 SER20 ILE21 SER22 CYS23 ARG24 SER25 SER26 GLN27 SER27A LEU27B LEU27C HIS27D THR27E ASN28 GLY29 PHE30 GLN31 TYR32 LEU33 ASP34 TRP35 TYR36 LEU37 GLN38 LYS39 PRO40 GLY41 GLN42 SER43 PRO44 GLN45 LEU46 LEU47 ILE48 TYR49 LEU50 GLY51 SER52 ASN53 ARG54 ALA55 THR56 GLY57 VAL58 PRO59 HIS60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 GLU70 PHE71 THR72 LEU73 LYS74 ILE75 SER76 ARG77 VAL78 GLU79 ALA80 GLU81 ASP82 VAL83 GLY84 VAL85 TYR86 TYR87 CYS88 MET89 GLN90 ALA91 LYS92 GLU93 SER94 PRO95 THR96 PHE97 GLY98 GLN99 GLY100 THR101 LYS102 VAL103 GLU104 ILE105 LYS106 ARG107 THR108 VAL109 ALA110 ALA111 PRO112 SER113 VAL114 PHE115 ILE116 PHE117 PRO118 PRO119 SER120 ASP121 GLU122 GLN123 LEU124 LYS125 SER126 GLY127 THR128 ALA129 SER130 VAL131 VAL132 CYS133 LEU134 LEU135 ASN136 ASN137 PHE138 TYR139 PRO140 ARG141 GLU142 ALA143 LYS144 VAL145 GLN146 TRP147 ASN151 ALA152 LEU153 GLN154 SER155 GLY156 ASN157 SER158 GLN159 GLU160 SER161 VAL162 THR163 GLU164 GLN165 ASP166 SER167 LYS168 ASP169 SER170 THR171 TYR172 SER173 LEU174 SER175 SER176 THR177 LEU178 THR179 LEU180 SER181 LYS182 ALA183 ASP184 TYR185 GLU186 LYS187 HIS188 LYS189 VAL190 TYR191 ALA192 CYS193 GLU194 VAL195 THR196 HIS197 GLN198 GLY199 LEU200 SER201 SER202 PRO203 VAL204 THR205 LYS206 SER207 PHE208 ASN209 ARG210
Unit 7 GLN1 VAL2 GLN3 LEU4 VAL5 GLN6 SER7 GLY8 ALA9 GLU10 VAL11 ARG12 LYS13 PRO14 GLY15 ALA16 SER17 VAL18 THR19 VAL20 SER21 CYS22 LYS23 THR24 SER25 GLY26 TYR27 THR28 PHE29 VAL30 ASN31 PHE32 TYR33 ILE34 VAL35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 GLN43 GLY44 LEU45 GLU46 TRP47 MET48 GLY49 VAL50 ILE51 ASN52 PRO52A PHE53 ARG54 GLY55 ASP56 THR57 TYR58 PHE59 ALA60 GLN61 LYS62 PHE63 LYS64 GLY65 ARG66 VAL67 THR68 LEU69 THR70 ARG71 ASP72 THR73 SER74 THR75 SER76 THR77 VAL78 PHE79 MET80 GLU81 LEU82 SER82A SER82B LEU82C ARG83 SER84 ASP85 ASP86 THR87 ALA88 ILE89 TYR90 TYR91 CYS92 ALA93 ARG94 ASP95 LEU96 GLU97 MET98 ARG99 ASP100 GLY100A ASN100B ASN100C HIS100D GLY100E SER100F HIS100G LEU100H GLU101 PHE102 TRP103 GLY104 GLN105 GLY106 THR107 LEU108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 GLY157 ALA158 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 THR193 TYR194 ILE195 CYS196 ASN197 ASN199 HIS200 LYS201
Unit 8 ILE2 VAL3 MET4 THR5 GLN6 SER7 PRO8 LEU9 SER10 LEU11 PRO12 VAL13 THR14 PRO15 GLY16 GLU17 ALA18 ALA19 SER20 ILE21 SER22 CYS23 ARG24 SER25 SER26 GLN27 SER27A LEU27B LEU27C HIS27D THR27E ASN28 GLY29 PHE30 GLN31 TYR32 LEU33 ASP34 TRP35 TYR36 LEU37 GLN38 LYS39 PRO40 GLY41 GLN42 SER43 PRO44 GLN45 LEU46 LEU47 ILE48 TYR49 LEU50 GLY51 SER52 ASN53 ARG54 ALA55 THR56 GLY57 VAL58 PRO59 HIS60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 GLU70 PHE71 THR72 LEU73 LYS74 ILE75 SER76 ARG77 VAL78 GLU79 ALA80 GLU81 ASP82 VAL83 GLY84 VAL85 TYR86 TYR87 CYS88 MET89 GLN90 ALA91 LYS92 GLU93 SER94 PRO95 THR96 PHE97 GLY98 GLN99 GLY100 THR101 LYS102 VAL103 GLU104 ILE105 LYS106 ARG107 THR108 VAL109 ALA110 ALA111 PRO112 SER113 VAL114 PHE115 ILE116 PHE117 PRO118 PRO119 ASP121 GLU122 GLN123 LEU124 LYS125 SER126 SER130 VAL131 VAL132 CYS133 LEU134 LEU135 ASN136 ASN137 PHE138 PRO140 ARG141 GLU142 GLN146 TRP147 LYS148 GLN154 SER155 GLY156 ASN157 SER158 GLN159 GLU160 SER161 VAL162 THR163 GLU164 GLN165 ASP166 SER167 LYS168 ASP169 SER170 THR171 TYR172 SER173 LEU174 SER175 SER176 THR177 LEU178 ALA183 ASP184 TYR185 GLU186 LYS187 HIS188 TYR191 ALA192 CYS193 GLU194 VAL195 THR196 HIS197 GLN198 GLY199 LEU200 PRO203 VAL204 THR205 LYS206 SER207 PHE208 ASN209 ARG210

Ligands
Unit 9 SO4221 CL222
Unit 10 CL214 CL215 CL216
Unit 11 CL221 CL222
Unit 12 GOL214 CL215
Unit 13 SO4221 GOL222
Unit 14 GOL214 CL215
Unit 15 SO4221 CL222
Unit 16 GOL214 CL215

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany