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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   STRUCTURAL ANALYSIS OF A NI(III)-METHYL SPECIES IN METHYL-COENZYME M REDUCTASE FROM METHANOTHERMOBACTER MARBURGENSIS

Authors :   P. E. Cedervall, C. M. Wilmot

Date :   23 Nov 10 (Deposition) - 13 Apr 11 (Release) - 29 Mar 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.20

Chains :   Asym./Biol. Unit : A,B,C,D,E,F

Keywords :   Metal-Binding, Nickel, Methyl-Coenzyme M Reductase, Methanogenesis, Methylation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. E. Cedervall, M. Dey, X. Li, R. Sarangi, B. Hedman, S. W. Ragsdale, C. M. Wilmot
Structural Analysis Of A Ni-Methyl Species In Methyl-Coenzyme M Reductase From Methanothermobacter Marburgensis.
J. Am. Chem. Soc. V. 133 5626 2011
PubMed-ID: 21438550 | Reference-DOI: 10.1021/JA110492P

Molecule 1 - METHYL-COENZYME M REDUCTASE I SUBUNIT ALPHA
	Chains	:	A, D
	EC Number	:	2.8.4.1
	Organism Common	:	METHANOBACTERIUM THERMOAUTOTROPHICUM
	Organism Scientific	:	METHANOTHERMOBACTER MARBURGENSIS
	Organism Taxid	:	145263
	Synonym	:	MCR I ALPHA, COENZYME-B SULFOETHYLTHIOTRANSFERASE ALPHA

Molecule 2 - METHYL-COENZYME M REDUCTASE I SUBUNIT BETA
	Chains	:	B, E
	EC Number	:	2.8.4.1
	Organism Common	:	METHANOBACTERIUM THERMOAUTOTROPHICUM
	Organism Scientific	:	METHANOTHERMOBACTER MARBURGENSIS
	Organism Taxid	:	145263
	Synonym	:	MCR I BETA, COENZYME-B SULFOETHYLTHIOTRANSFERASE BETA

Molecule 3 - METHYL-COENZYME M REDUCTASE I SUBUNIT GAMMA
	Chains	:	C, F
	EC Number	:	2.8.4.1
	Organism Common	:	METHANOBACTERIUM THERMOAUTOTROPHICUM
	Organism Scientific	:	METHANOTHERMOBACTER MARBURGENSIS
	Organism Taxid	:	145263
	Synonym	:	MCR I GAMMA, COENZYME-B SULFOETHYLTHIOTRANSFERASE GAMMA

		1	2	3	4	5	6
Asymmetric/Biological Unit	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (13, 34)

No.	Name	Count	Type	Full Name
1	06C	2	Ligand/Ion	IODOMETHANE
2	AGM	2	Mod. Amino Acid	5-METHYL-ARGININE
3	COM	2	Ligand/Ion	1-THIOETHANESULFONIC ACID
4	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
5	F43	2	Ligand/Ion	FACTOR 430
6	GL3	2	Mod. Amino Acid	THIOGLYCIN
7	K	1	Ligand/Ion	POTASSIUM ION
8	MG	12	Ligand/Ion	MAGNESIUM ION
9	MGN	2	Mod. Amino Acid	2-METHYL-GLUTAMINE
10	MHS	2	Mod. Amino Acid	N1-METHYLATED HISTIDINE
11	SMC	2	Mod. Amino Acid	S-METHYLCYSTEINE
12	TP7	2	Ligand/Ion	COENZYME B
13	TXZ	2	Ligand/Ion	O-PHOSPHONO-N-(6-SULFANYLHEXANOYL)-L-THREONINE

Asymmetric Unit (24, 24)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HOH A:850 , HOH A:3425 , HOH D:899	BINDING SITE FOR RESIDUE MG A 551
02	AC2	SOFTWARE	HOH A:600 , HOH A:725 , HOH A:1212 , HOH A:1508 , HOH A:1856 , HOH A:2090	BINDING SITE FOR RESIDUE MG A 552
03	AC3	SOFTWARE	HOH A:1159 , HOH A:1212 , HOH A:1456 , HOH A:1481 , HOH A:1508 , HOH A:1968	BINDING SITE FOR RESIDUE MG A 553
04	AC4	SOFTWARE	HOH A:1037 , HOH A:1115 , HOH A:3449 , HOH A:3450	BINDING SITE FOR RESIDUE MG A 554
05	AC5	SOFTWARE	ALA A:144 , VAL A:145 , VAL A:146 , GLN A:147 , GLN A:230 , MET A:233 , ALA A:243 , HOH A:577 , HOH A:615 , HOH A:619 , HOH A:624 , HOH A:671 , HOH A:747 , GLY D:326 , GLY D:327 , VAL D:328 , GLY D:329 , PHE D:330 , THR D:331 , GLN D:332 , TYR D:333 , PHE D:396 , GLY D:397 , GLY D:442 , PHE D:443 , COM D:555 , 06C D:556 , HOH D:626 , SER E:365 , ILE E:366 , TYR E:367 , LEU F:117 , SER F:118 , GLY F:119 , LYS F:153 , SER F:154 , VAL F:155 , HIS F:156 , HIS F:158 , HOH F:262	BINDING SITE FOR RESIDUE F43 A 555
06	AC6	SOFTWARE	TYR A:333 , PHE A:443 , TYR A:444 , HOH A:733 , PHE B:361 , TYR B:367 , LEU C:117 , ARG C:120 , F43 D:552	BINDING SITE FOR RESIDUE COM A 556
07	AC7	SOFTWARE	ARG A:270 , MET A:324 , PHE A:330 , PHE A:443 , MET A:480 , ASN A:481 , VAL A:482 , HOH A:613 , HOH A:628 , HOH A:637 , HOH A:715 , HOH A:726 , GLY B:368 , GLY B:369 , HIS B:379 , ILE B:380 , ARG D:225 , LYS D:256 , MHS D:257	BINDING SITE FOR RESIDUE TXZ A 557
08	AC8	SOFTWARE	ARG A:270 , LEU A:320 , MET A:324 , SER A:325 , PHE A:330 , PHE A:443 , MET A:480 , ASN A:481 , VAL A:482 , HOH A:613 , HOH A:628 , HOH A:637 , HOH A:715 , HOH A:726 , TYR B:367 , GLY B:368 , GLY B:369 , HIS B:379 , ILE B:380 , ARG D:225 , LYS D:256 , MHS D:257	BINDING SITE FOR RESIDUE TP7 A 558
09	AC9	SOFTWARE	TYR A:333 , TYR B:367 , F43 D:552	BINDING SITE FOR RESIDUE 06C A 559
10	BC1	SOFTWARE	ARG A:102 , SER A:215 , ARG A:216 , CYS A:218 , ARG D:102 , SER D:215 , ARG D:216 , CYS D:218	BINDING SITE FOR RESIDUE K A 561
11	BC2	SOFTWARE	HOH B:1103 , HOH B:1305 , HOH B:2344 , HOH B:3452 , HOH B:3453	BINDING SITE FOR RESIDUE MG B 444
12	BC3	SOFTWARE	ASP B:271 , HOH B:670 , HOH B:976 , HOH B:1040 , HOH B:1911 , HOH B:2168	BINDING SITE FOR RESIDUE MG B 445
13	BC4	SOFTWARE	GLU C:30 , HOH C:726 , HOH C:3417 , HOH C:3418 , HOH C:3419 , HOH C:3420	BINDING SITE FOR RESIDUE MG C 250
14	BC5	SOFTWARE	HOH A:3614 , HOH C:1328 , HOH C:1849	BINDING SITE FOR RESIDUE MG C 251
15	BC6	SOFTWARE	HOH D:1211 , HOH D:1613 , HOH D:3428 , HOH D:3429 , HOH D:3430 , HOH E:1573	BINDING SITE FOR RESIDUE MG D 551
16	BC7	SOFTWARE	GLY A:326 , GLY A:327 , VAL A:328 , GLY A:329 , PHE A:330 , THR A:331 , GLN A:332 , TYR A:333 , PHE A:396 , GLY A:397 , GLY A:442 , PHE A:443 , COM A:556 , 06C A:559 , HOH A:609 , SER B:365 , ILE B:366 , TYR B:367 , LEU C:117 , SER C:118 , GLY C:119 , ARG C:120 , LYS C:153 , SER C:154 , VAL C:155 , HIS C:156 , HIS C:158 , HOH C:264 , ALA D:144 , VAL D:145 , VAL D:146 , GLN D:147 , GLN D:230 , MET D:233 , ALA D:243 , HOH D:582 , HOH D:610 , HOH D:619 , HOH D:640 , HOH D:649 , HOH D:700	BINDING SITE FOR RESIDUE F43 D 552
17	BC8	SOFTWARE	ARG A:225 , LYS A:256 , MHS A:257 , ARG D:270 , LEU D:320 , MET D:324 , PHE D:330 , PHE D:443 , MET D:480 , ASN D:481 , VAL D:482 , HOH D:568 , HOH D:580 , HOH D:606 , HOH D:607 , HOH D:716 , PHE E:362 , TYR E:367 , GLY E:368 , GLY E:369 , HIS E:379 , ILE E:380	BINDING SITE FOR RESIDUE TP7 D 553
18	BC9	SOFTWARE	ARG A:225 , LYS A:256 , MHS A:257 , ARG D:270 , MET D:324 , PHE D:330 , PHE D:443 , MET D:480 , ASN D:481 , VAL D:482 , HOH D:568 , HOH D:580 , HOH D:606 , HOH D:607 , HOH D:716 , PHE E:362 , GLY E:369 , HIS E:379 , ILE E:380	BINDING SITE FOR RESIDUE TXZ D 554
19	CC1	SOFTWARE	F43 A:555 , TYR D:333 , PHE D:443 , TYR D:444 , HOH D:713 , PHE E:361 , SER E:365 , TYR E:367 , LEU F:117 , ARG F:120	BINDING SITE FOR RESIDUE COM D 555
20	CC2	SOFTWARE	F43 A:555 , TYR D:333 , TYR E:367	BINDING SITE FOR RESIDUE 06C D 556
21	CC3	SOFTWARE	TYR D:348	BINDING SITE FOR RESIDUE EDO D 558
22	CC4	SOFTWARE	HOH E:1993 , HOH E:2253 , HOH E:3439 , HOH E:3440	BINDING SITE FOR RESIDUE MG E 444
23	CC5	SOFTWARE	HOH C:3555 , ASP E:147 , HOH E:1070 , HOH E:1373 , HOH E:3557	BINDING SITE FOR RESIDUE MG E 445
24	CC6	SOFTWARE	GLU F:30 , HOH F:635 , HOH F:648 , HOH F:3422 , HOH F:3423 , HOH F:3424	BINDING SITE FOR RESIDUE MG F 250

(no "SS Bond" information available for 3POT)

Asymmetric/Biological Unit

No.	Residues
1	Tyr B:164	-	Pro B:165
2	Tyr E:164	-	Pro E:165

(no "SAP(SNP)/Variant" information available for 3POT)

(no "PROSITE Motif" information available for 3POT)

(no "Exon" information available for 3POT)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:548
 aligned with MCRA_METTM | P11558 from UniProtKB/Swiss-Prot  Length:550

    Alignment length:548
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541        
           MCRA_METTM     2 ADKLFINALKKKFEESPEEKKTTFYTLGGWKQSERKTEFVNAGKEVAAKRGIPQYNPDIGTPLGQRVLMPYQVSTTDTYVEGDDLHFVNNAAMQQMWDDIRRTVIVGLNHAHAVIEKRLGKEVTPETITHYLETVNHAMPGAAVVQEHMVETHPALVADSYVKVFTGNDEIADEIDPAFVIDINKQFPEDQAETLKAEVGDGIWQVVRIPTIVSRTCDGATTSRWSAMQIGMSMISAYKQAAGEAATGDFAYAAKHAEVIHMGTYLPVRRARGENEPGGVPFGYLADICQSSRVNYEDPVRVSLDVVATGAMLYDQIWLGSYMSGGVGFTQYATAAYTDNILDDFTYFGKEYVEDKYGLCEAPNNMDTVLDVATEVTFYGLEQYEEYPALLEDQFGGSQRAAVVAAAAGCSTAFATGNAQTGLSGWYLSMYLHKEQHSRLGFYGYDLQDQCGASNVFSIRGDEGLPLELRGPNYPNYAMNVGHQGEYAGISQAPHAARGDAFVFNPLVKIAFADDNLVFDFTNVRGEFAKGALREFEPAGERALITPA 549
               SCOP domains d3pota1 A:2-269 automated matches                                                                                                                                                                                                                                           d3pota2 A:270-549 automated matches                                                                                                                                                                                                                                                      SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhh..................eee......eee.hhhhhhhhhhhhhhhhhhhheeeeehhhhhhhhhhh.....hhhhhhhhhhhhhhhh.............hhhhhh..eeeeee.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhh..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..ee......hhhhh....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh............hhhhhhh....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh........hhhhh...hhhhh....hhhhhhhhhhhhhhhhh.....hhhhhhhh..........hhhhhhhhhhh........hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pot A   2 ADKLFINALKKKFEESPEEKKTTFYTLGGWKQSERKTEFVNAGKEVAAKRGIPQYNPDIGTPLGQRVLMPYQVSTTDTYVEGDDLHFVNNAAMQQMWDDIRRTVIVGLNHAHAVIEKRLGKEVTPETITHYLETVNHAMPGAAVVQEHMVETHPALVADSYVKVFTGNDEIADEIDPAFVIDINKQFPEDQAETLKAEVGDGIWQVVRIPTIVSRTCDGATTSRWSAMQIGMSMISAYKQAAGEAATGDFAYAAKhAEVIHMGTYLPVRrARGENEPGGVPFGYLADICQSSRVNYEDPVRVSLDVVATGAMLYDQIWLGSYMSGGVGFTQYATAAYTDNILDDFTYFGKEYVEDKYGLCEAPNNMDTVLDVATEVTFYGLEQYEEYPALLEDQFGGSqRAAVVAAAAGCSTAFATGNAQTGLSGWYLSMYLHKEQHSRLGFYgYDLQDQcGASNVFSIRGDEGLPLELRGPNYPNYAMNVGHQGEYAGISQAPHAARGDAFVFNPLVKIAFADDNLVFDFTNVRGEFAKGALREFEPAGERALITPA 549
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251     | 261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441   |   451|      461       471       481       491       501       511       521       531       541        
                                                                                                                                                                                                                                                                                         257-MHS       271-AGM                                                                                                                          400-MGN                                      445-GL3  |                                                                                                 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            452-SMC

Chain B from PDB  Type:PROTEIN  Length:442
 aligned with MCRB_METTM | P11560 from UniProtKB/Swiss-Prot  Length:443

    Alignment length:442
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441  
           MCRB_METTM     2 AKFEDKVDLYDDRGNLVEEQVPLEALSPLRNPAIKSIVQGIKRTVAVNLEGIENALKTAKVGGPACKIMGRELDLDIVGNAESIAAAAKEMIQVTEDDDTNVELLGGGKRALVQVPSARFDVAAEYSAAPLVTATAFVQAIINEFDVSMYDANMVKAAVLGRYPQSVEYMGANIATMLDIPQKLEGPGYALRNIMVNHVVAATLKNTLQAAALSTILEQTAMFEMGDAVGAFERMHLLGLAYQGMNADNLVFDLVKANGKEGTVGSVIADLVERALEDGVIKVEKELTDYKVYGTDDLAMWNAYAAAGLMAATMVNQGAARAAQGVSSTLLYYNDLIEFETGLPSVDFGKVEGTAVGFSFFSHSIYGGGGPGIFNGNHIVTRHSKGFAIPCVAAAMALDAGTQMFSPEATSGLIKEVFSQVDEFREPLKYVVEAAAEIKNEI 443
               SCOP domains d3potb1 B:2-188 automated matches                                                                                                                                                          d3potb2 B:189-443 automated matches                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.....eeeeeee.hhhh...hhhhhhhhhhhhheeeehhhhhhhhhhhh....................hhhhhhhhhhhhhh.......eeeeehhhheeeee.hhhhhhh....hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh............ee....hhhhh....hhhhh.hhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...eeeeee..eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh........hhhhh.............hhhhhhhhhhh.......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pot B   2 AKFEDKVDLYDDRGNLVEEQVPLEALSPLRNPAIKSIVQGIKRTVAVNLEGIENALKTAKVGGPACKIMGRELDLDIVGNAESIAAAAKEMIQVTEDDDTNVELLGGGKRALVQVPSARFDVAAEYSAAPLVTATAFVQAIINEFDVSMYDANMVKAAVLGRYPQSVEYMGANIATMLDIPQKLEGPGYALRNIMVNHVVAATLKNTLQAAALSTILEQTAMFEMGDAVGAFERMHLLGLAYQGMNADNLVFDLVKANGKEGTVGSVIADLVERALEDGVIKVEKELTDYKVYGTDDLAMWNAYAAAGLMAATMVNQGAARAAQGVSSTLLYYNDLIEFETGLPSVDFGKVEGTAVGFSFFSHSIYGGGGPGIFNGNHIVTRHSKGFAIPCVAAAMALDAGTQMFSPEATSGLIKEVFSQVDEFREPLKYVVEAAAEIKNEI 443
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441

Chain C from PDB  Type:PROTEIN  Length:246
 aligned with MCRG_METTM | P11562 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:246
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241      
           MCRG_METTM     2 AQYYPGTTKVAQNRRNFCNPEYELEKLREISDEDVVKILGHRAPGEEYPSVHPPLEEMDEPEDAIREMVEPIDGAKAGDRVRYIQFTDSMYFAPAQPYVRSRAYLCRYRGADAGTLSGRQIIETRERDLEKISKELLETEFFDPARSGVRGKSVHGHSLRLDEDGMMFDMLRRQIYNKDTGRVEMVKNQIGDELDEPVDLGEPLDEETLMEKTTIYRVDGEAYRDDVEAVEIMQRIHVLRSQGGFN 247
               SCOP domains d3potc_ C: Methyl-coenzyme M reductase gamma chain                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh...........hhhhhhhhhh.............hhhhh....hhhhhhh..hhhhhhh..eeeeeeee.......hhhhhhhhhhhhh...eeee....eeeeeehhhhhhhhhhhhhh.......eee........................eee......eeeee.....eeeeeee.....hhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3pot C   2 AQYYPGTTKVAQNRRNFCNPEYELEKLREISDEDVVKILGHRAPGEEYPSVHPPLEEMDEPEDAIREMVEPIDGAKAGDRVRYIQFTDSMYFAPAQPYVRSRAYLCRYRGADAGTLSGRQIIETRERDLEKISKELLETEFFDPARSGVRGKSVHGHSLRLDEDGMMFDMLRRQIYNKDTGRVEMVKNQIGDELDEPVDLGEPLDEETLMEKTTIYRVDGEAYRDDVEAVEIMQRIHVLRSQGGFN 247
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241

Chain D from PDB  Type:PROTEIN  Length:548
 aligned with MCRA_METTM | P11558 from UniProtKB/Swiss-Prot  Length:550

    Alignment length:548
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541        
           MCRA_METTM     2 ADKLFINALKKKFEESPEEKKTTFYTLGGWKQSERKTEFVNAGKEVAAKRGIPQYNPDIGTPLGQRVLMPYQVSTTDTYVEGDDLHFVNNAAMQQMWDDIRRTVIVGLNHAHAVIEKRLGKEVTPETITHYLETVNHAMPGAAVVQEHMVETHPALVADSYVKVFTGNDEIADEIDPAFVIDINKQFPEDQAETLKAEVGDGIWQVVRIPTIVSRTCDGATTSRWSAMQIGMSMISAYKQAAGEAATGDFAYAAKHAEVIHMGTYLPVRRARGENEPGGVPFGYLADICQSSRVNYEDPVRVSLDVVATGAMLYDQIWLGSYMSGGVGFTQYATAAYTDNILDDFTYFGKEYVEDKYGLCEAPNNMDTVLDVATEVTFYGLEQYEEYPALLEDQFGGSQRAAVVAAAAGCSTAFATGNAQTGLSGWYLSMYLHKEQHSRLGFYGYDLQDQCGASNVFSIRGDEGLPLELRGPNYPNYAMNVGHQGEYAGISQAPHAARGDAFVFNPLVKIAFADDNLVFDFTNVRGEFAKGALREFEPAGERALITPA 549
               SCOP domains d3potd1 D:2-269 automated matches                                                                                                                                                                                                                                           d3potd2 D:270-549 automated matches                                                                                                                                                                                                                                                      SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) MCR_alpha_N-3potD03 D:2-268                                                                                                                                                                                                                                                -----------------------------------------------MCR_alpha-3potD01 D:316-441                                                                                                   ------------------------------------------------------------------------------------------------------------ Pfam domains (1)
           Pfam domains (2) MCR_alpha_N-3potD04 D:2-268                                                                                                                                                                                                                                                -----------------------------------------------MCR_alpha-3potD02 D:316-441                                                                                                   ------------------------------------------------------------------------------------------------------------ Pfam domains (2)
         Sec.struct. author ....hhhhhhhhh.......ee.....hhhhhhhhhhhhhhhhhhhhhhhh..................eee......eee.hhhhhhhhhhhhhhhhhhhheeeeehhhhhhhhhhh.....hhhhhhhhhhhhhhhh.............hhhhhh..eeeeee.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhh..hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh..ee......hhhhh....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh............hhhhhhh....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh........hhhhh...hhhhh....hhhhhhhhhhhhhhhhh.....hhhhhhhh..........hhhhhhhhhhh........hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pot D   2 ADKLFINALKKKFEESPEEKKTTFYTLGGWKQSERKTEFVNAGKEVAAKRGIPQYNPDIGTPLGQRVLMPYQVSTTDTYVEGDDLHFVNNAAMQQMWDDIRRTVIVGLNHAHAVIEKRLGKEVTPETITHYLETVNHAMPGAAVVQEHMVETHPALVADSYVKVFTGNDEIADEIDPAFVIDINKQFPEDQAETLKAEVGDGIWQVVRIPTIVSRTCDGATTSRWSAMQIGMSMISAYKQAAGEAATGDFAYAAKhAEVIHMGTYLPVRrARGENEPGGVPFGYLADICQSSRVNYEDPVRVSLDVVATGAMLYDQIWLGSYMSGGVGFTQYATAAYTDNILDDFTYFGKEYVEDKYGLCEAPNNMDTVLDVATEVTFYGLEQYEEYPALLEDQFGGSqRAAVVAAAAGCSTAFATGNAQTGLSGWYLSMYLHKEQHSRLGFYgYDLQDQcGASNVFSIRGDEGLPLELRGPNYPNYAMNVGHQGEYAGISQAPHAARGDAFVFNPLVKIAFADDNLVFDFTNVRGEFAKGALREFEPAGERALITPA 549
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251     | 261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441   |   451|      461       471       481       491       501       511       521       531       541        
                                                                                                                                                                                                                                                                                         257-MHS       271-AGM                                                                                                                          400-MGN                                      445-GL3  |                                                                                                 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            452-SMC

Chain E from PDB  Type:PROTEIN  Length:442
 aligned with MCRB_METTM | P11560 from UniProtKB/Swiss-Prot  Length:443

    Alignment length:442
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441  
           MCRB_METTM     2 AKFEDKVDLYDDRGNLVEEQVPLEALSPLRNPAIKSIVQGIKRTVAVNLEGIENALKTAKVGGPACKIMGRELDLDIVGNAESIAAAAKEMIQVTEDDDTNVELLGGGKRALVQVPSARFDVAAEYSAAPLVTATAFVQAIINEFDVSMYDANMVKAAVLGRYPQSVEYMGANIATMLDIPQKLEGPGYALRNIMVNHVVAATLKNTLQAAALSTILEQTAMFEMGDAVGAFERMHLLGLAYQGMNADNLVFDLVKANGKEGTVGSVIADLVERALEDGVIKVEKELTDYKVYGTDDLAMWNAYAAAGLMAATMVNQGAARAAQGVSSTLLYYNDLIEFETGLPSVDFGKVEGTAVGFSFFSHSIYGGGGPGIFNGNHIVTRHSKGFAIPCVAAAMALDAGTQMFSPEATSGLIKEVFSQVDEFREPLKYVVEAAAEIKNEI 443
               SCOP domains d3pote1 E:2-188 automated matches                                                                                                                                                          d3pote2 E:189-443 automated matches                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----MCR_beta_N-3potE03 E:6-187                                                                                                                                                            -MCR_beta-3potE01 E:189-442                                                                                                                                                                                                                                    - Pfam domains (1)
           Pfam domains (2) ----MCR_beta_N-3potE04 E:6-187                                                                                                                                                            -MCR_beta-3potE02 E:189-442                                                                                                                                                                                                                                    - Pfam domains (2)
         Sec.struct. author .....eeeee.....eeeeeee.hhhh...hhhhhhhhhhhhheeeehhhhhhhhhhhh.................hhhhhhhhhhhhhhhhh.......eeeeehhhheeeee.hhhhhhh....hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh............ee....hhhhh....hhhhh.hhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...eeeeee..eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh........hhhhh.............hhhhhhhhhhh.......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pot E   2 AKFEDKVDLYDDRGNLVEEQVPLEALSPLRNPAIKSIVQGIKRTVAVNLEGIENALKTAKVGGPACKIMGRELDLDIVGNAESIAAAAKEMIQVTEDDDTNVELLGGGKRALVQVPSARFDVAAEYSAAPLVTATAFVQAIINEFDVSMYDANMVKAAVLGRYPQSVEYMGANIATMLDIPQKLEGPGYALRNIMVNHVVAATLKNTLQAAALSTILEQTAMFEMGDAVGAFERMHLLGLAYQGMNADNLVFDLVKANGKEGTVGSVIADLVERALEDGVIKVEKELTDYKVYGTDDLAMWNAYAAAGLMAATMVNQGAARAAQGVSSTLLYYNDLIEFETGLPSVDFGKVEGTAVGFSFFSHSIYGGGGPGIFNGNHIVTRHSKGFAIPCVAAAMALDAGTQMFSPEATSGLIKEVFSQVDEFREPLKYVVEAAAEIKNEI 443
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441

Chain F from PDB  Type:PROTEIN  Length:246
 aligned with MCRG_METTM | P11562 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:246
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241      
           MCRG_METTM     2 AQYYPGTTKVAQNRRNFCNPEYELEKLREISDEDVVKILGHRAPGEEYPSVHPPLEEMDEPEDAIREMVEPIDGAKAGDRVRYIQFTDSMYFAPAQPYVRSRAYLCRYRGADAGTLSGRQIIETRERDLEKISKELLETEFFDPARSGVRGKSVHGHSLRLDEDGMMFDMLRRQIYNKDTGRVEMVKNQIGDELDEPVDLGEPLDEETLMEKTTIYRVDGEAYRDDVEAVEIMQRIHVLRSQGGFN 247
               SCOP domains d3potf_ F: Methyl-coenzyme M reductase gamma chain                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) MCR_gamma-3potF01 F:2-247                                                                                                                                                                                                                              Pfam domains (1)
           Pfam domains (2) MCR_gamma-3potF02 F:2-247                                                                                                                                                                                                                              Pfam domains (2)
         Sec.struct. author .......hhhhhhhhhhhh...........hhhhhhhhhh.............hhhhh....hhhhhhh..hhhhhhh..eeeeeeee.......hhhhhhhhhhhhh...eeee....eeeeeehhhhhhhhhhhhhh.......eee...........ee...........eeee....eeeeee.....eeeeeee.....hhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3pot F   2 AQYYPGTTKVAQNRRNFCNPEYELEKLREISDEDVVKILGHRAPGEEYPSVHPPLEEMDEPEDAIREMVEPIDGAKAGDRVRYIQFTDSMYFAPAQPYVRSRAYLCRYRGADAGTLSGRQIIETRERDLEKISKELLETEFFDPARSGVRGKSVHGHSLRLDEDGMMFDMLRRQIYNKDTGRVEMVKNQIGDELDEPVDLGEPLDEETLMEKTTIYRVDGEAYRDDVEAVEIMQRIHVLRSQGGFN 247
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 3POT)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,D (MCRA_METTM | P11558)

molecular function
	GO:0050524	coenzyme-B sulfoethylthiotransferase activity	Catalysis of the reaction: coenzyme B + methyl-coenzyme M = coenzyme M-coenzyme B heterodisulfide + methane. Methyl-CoM is also known as 2-(methylthio)ethanesulfonate, coenzyme B as N-(7-mercaptoheptanoyl)threonine 3-O-phosphate, and coenzyme M-coenzyme B heterodisulfide as CoM-S-S-CoB.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0015948	methanogenesis	The chemical reactions and pathways resulting in the formation of methane, a colorless, odorless, flammable gas with the formula CH4. It is the simplest of the alkanes.

Chain B,E (MCRB_METTM | P11560)

molecular function
	GO:0050524	coenzyme-B sulfoethylthiotransferase activity	Catalysis of the reaction: coenzyme B + methyl-coenzyme M = coenzyme M-coenzyme B heterodisulfide + methane. Methyl-CoM is also known as 2-(methylthio)ethanesulfonate, coenzyme B as N-(7-mercaptoheptanoyl)threonine 3-O-phosphate, and coenzyme M-coenzyme B heterodisulfide as CoM-S-S-CoB.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0015948	methanogenesis	The chemical reactions and pathways resulting in the formation of methane, a colorless, odorless, flammable gas with the formula CH4. It is the simplest of the alkanes.

Chain C,F (MCRG_METTM | P11562)

molecular function
	GO:0050524	coenzyme-B sulfoethylthiotransferase activity	Catalysis of the reaction: coenzyme B + methyl-coenzyme M = coenzyme M-coenzyme B heterodisulfide + methane. Methyl-CoM is also known as 2-(methylthio)ethanesulfonate, coenzyme B as N-(7-mercaptoheptanoyl)threonine 3-O-phosphate, and coenzyme M-coenzyme B heterodisulfide as CoM-S-S-CoB.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0015948	methanogenesis	The chemical reactions and pathways resulting in the formation of methane, a colorless, odorless, flammable gas with the formula CH4. It is the simplest of the alkanes.

Asymmetric/Biological Unit
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(no "Related Entries Specified in the PDB File" available for 3POT)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (13, 34)

Sites (24, 24)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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SCOP Domains (3, 10)

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