3PM5 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF BOXB IN MIXED VALENT STATE WITH BOUND BENZOYL-COA

Authors :   T. Weinert, L. Rather, G. Fuchs, U. Ermler

Date :   16 Nov 10 (Deposition) - 01 Jun 11 (Release) - 14 Sep 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: A,B  (1x)
Biol. Unit 6: C,D  (1x)

Keywords :   Diiron Center, Epoxidase, Oxidoreductase, Benzoyl Coenzyme A (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. J. Rather, T. Weinert, U. Demmer, E. Bill, W. Ismail, G. Fuchs, U. Ermler
Structure And Mechanism Of The Diiron Benzoyl-Coenzyme A Epoxidase Boxb.
J. Biol. Chem. V. 286 29241 2011
PubMed-ID: 21632537 | Reference-DOI: 10.1074/JBC.M111.236893

Molecule 1 - BENZOYL-COA OXYGENASE COMPONENT B
	Chains	:	A, B, C, D
	EC Number	:	1.14.12.21
	Engineered	:	YES
	Expression System	:	AZOARCUS EVANSII
	Expression System Taxid	:	59406
	Fragment	:	BOXB
	Gene	:	AZOARCUS EVANSII, BOXB
	Organism Scientific	:	AZOARCUS EVANSII
	Organism Taxid	:	59406
	Synonym	:	BENZOYL-COA 2,3-DIOXYGENASE SUBUNIT B, BENZOYL-COA DIOXYGENASE OXYGENASE COMPONENT

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:	A	B
Biological Unit 6 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (7, 30)

No.	Name	Count	Type	Full Name
1	BYC	4	Ligand/Ion	BENZOYL COENZYME A
2	CL	4	Ligand/Ion	CHLORIDE ION
3	FE	8	Ligand/Ion	FE (III) ION
4	GOL	2	Ligand/Ion	GLYCEROL
5	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL
6	PGO	4	Ligand/Ion	S-1,2-PROPANEDIOL
7	SO4	7	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 5)

No.	Name	Count	Type	Full Name
1	BYC	1	Ligand/Ion	BENZOYL COENZYME A
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	FE	-1	Ligand/Ion	FE (III) ION
4	GOL	-1	Ligand/Ion	GLYCEROL
5	PGE	-1	Ligand/Ion	TRIETHYLENE GLYCOL
6	PGO	1	Ligand/Ion	S-1,2-PROPANEDIOL
7	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	BYC	1	Ligand/Ion	BENZOYL COENZYME A
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	FE	-1	Ligand/Ion	FE (III) ION
4	GOL	-1	Ligand/Ion	GLYCEROL
5	PGE	-1	Ligand/Ion	TRIETHYLENE GLYCOL
6	PGO	2	Ligand/Ion	S-1,2-PROPANEDIOL
7	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 3 (3, 5)

No.	Name	Count	Type	Full Name
1	BYC	1	Ligand/Ion	BENZOYL COENZYME A
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	FE	-1	Ligand/Ion	FE (III) ION
4	GOL	1	Ligand/Ion	GLYCEROL
5	PGE	-1	Ligand/Ion	TRIETHYLENE GLYCOL
6	PGO	-1	Ligand/Ion	S-1,2-PROPANEDIOL
7	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 4 (5, 5)

No.	Name	Count	Type	Full Name
1	BYC	1	Ligand/Ion	BENZOYL COENZYME A
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	FE	-1	Ligand/Ion	FE (III) ION
4	GOL	1	Ligand/Ion	GLYCEROL
5	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL
6	PGO	1	Ligand/Ion	S-1,2-PROPANEDIOL
7	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 5 (3, 8)

No.	Name	Count	Type	Full Name
1	BYC	2	Ligand/Ion	BENZOYL COENZYME A
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	FE	-1	Ligand/Ion	FE (III) ION
4	GOL	-1	Ligand/Ion	GLYCEROL
5	PGE	-1	Ligand/Ion	TRIETHYLENE GLYCOL
6	PGO	3	Ligand/Ion	S-1,2-PROPANEDIOL
7	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 6 (5, 10)

No.	Name	Count	Type	Full Name
1	BYC	2	Ligand/Ion	BENZOYL COENZYME A
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	FE	-1	Ligand/Ion	FE (III) ION
4	GOL	2	Ligand/Ion	GLYCEROL
5	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL
6	PGO	1	Ligand/Ion	S-1,2-PROPANEDIOL
7	SO4	4	Ligand/Ion	SULFATE ION

Asymmetric Unit (30, 30)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TYR A:4 , GLU A:6 , ARG A:7 , ARG C:106 , ARG C:167 , ASP C:168	BINDING SITE FOR RESIDUE SO4 C 482
02	AC2	SOFTWARE	ARG A:7 , ASN A:10 , LEU A:14 , ASN A:15 , LYS D:344	BINDING SITE FOR RESIDUE SO4 A 482
03	AC3	SOFTWARE	ASP C:343 , LEU C:413 , ILE C:414 , SER C:415 , SER D:107 , ARG D:110	BINDING SITE FOR RESIDUE SO4 C 483
04	AC4	SOFTWARE	HOH C:618 , THR D:420 , HIS D:421 , LYS D:424	BINDING SITE FOR RESIDUE SO4 D 482
05	AC5	SOFTWARE	ASP A:343 , LEU A:413 , ILE A:414 , SER A:415 , HOH A:637 , SER B:107 , ARG B:110	BINDING SITE FOR RESIDUE SO4 A 483
06	AC6	SOFTWARE	GLU A:178 , ASN A:186 , HOH A:530 , THR B:420 , HIS B:421 , LYS B:424	BINDING SITE FOR RESIDUE SO4 A 484
07	AC7	SOFTWARE	THR C:420 , LYS C:424 , HOH C:545 , GLU D:178 , HOH D:518	BINDING SITE FOR RESIDUE SO4 C 484
08	AC8	SOFTWARE	ARG A:110 , GLU A:172 , HOH A:534 , GLU B:416	BINDING SITE FOR RESIDUE CL A 485
09	AC9	SOFTWARE	GLU C:416 , ARG D:110 , HOH D:566	BINDING SITE FOR RESIDUE CL C 485
10	BC1	SOFTWARE	GLU A:416 , ARG B:110 , HOH B:624	BINDING SITE FOR RESIDUE CL A 486
11	BC2	SOFTWARE	ARG C:110 , GLU D:416 , HOH D:534	BINDING SITE FOR RESIDUE CL D 483
12	BC3	SOFTWARE	ARG A:106 , GLY A:166 , ARG A:167 , ASP A:168	BINDING SITE FOR RESIDUE PGO A 487
13	BC4	SOFTWARE	HIS B:129 , THR B:133 , HIS B:437 , ARG C:442	BINDING SITE FOR RESIDUE PGO B 482
14	BC5	SOFTWARE	HIS D:396 , HOH D:556	BINDING SITE FOR RESIDUE PGO D 484
15	BC6	SOFTWARE	ARG B:442 , HIS C:129 , THR C:133 , HIS C:437	BINDING SITE FOR RESIDUE PGO B 483
16	BC7	SOFTWARE	PHE D:472 , ASN D:473	BINDING SITE FOR RESIDUE GOL C 486
17	BC8	SOFTWARE	ARG D:106 , ARG D:167 , ASP D:168	BINDING SITE FOR RESIDUE GOL D 485
18	BC9	SOFTWARE	ASP C:185 , SER D:202 , PHE D:290 , HIS D:423 , LEU D:427 , PRO D:428 , ARG D:433 , HOH D:540	BINDING SITE FOR RESIDUE PGE D 486
19	CC1	SOFTWARE	GLU A:120 , GLU A:150 , HIS A:153 , GLU A:240 , BYC A:1003	BINDING SITE FOR RESIDUE FE A 1001
20	CC2	SOFTWARE	GLU A:150 , ASP A:211 , GLU A:240 , HIS A:243	BINDING SITE FOR RESIDUE FE A 1002
21	CC3	SOFTWARE	GLN A:116 , THR A:119 , GLU A:120 , SER A:123 , GLU A:150 , PHE A:193 , PHE A:206 , THR A:210 , ASP A:211 , ASP A:213 , GLY A:214 , LEU A:298 , GLY A:300 , ALA A:301 , SER A:304 , SER A:305 , ASN A:306 , TYR A:310 , LYS A:316 , ASN A:357 , ILE A:399 , HOH A:605 , FE A:1001 , LYS B:398 , GLY B:400 , ALA B:403 , ASP B:404 , BYC B:1003	BINDING SITE FOR RESIDUE BYC A 1003
22	CC4	SOFTWARE	GLU B:120 , GLU B:150 , HIS B:153 , GLU B:240 , FE B:1002 , BYC B:1003	BINDING SITE FOR RESIDUE FE B 1001
23	CC5	SOFTWARE	GLU B:150 , ASP B:211 , GLU B:240 , HIS B:243 , FE B:1001	BINDING SITE FOR RESIDUE FE B 1002
24	CC6	SOFTWARE	LYS A:398 , GLY A:400 , ALA A:403 , ASP A:404 , BYC A:1003 , GLN B:116 , THR B:119 , GLU B:120 , SER B:123 , GLU B:150 , PHE B:193 , PHE B:206 , THR B:210 , ASP B:211 , ASP B:213 , GLY B:214 , LEU B:298 , GLY B:300 , ALA B:301 , SER B:304 , ASN B:306 , TYR B:310 , LYS B:316 , ASN B:357 , ILE B:399 , HOH B:532 , HOH B:591 , HOH B:638 , HOH B:648 , FE B:1001	BINDING SITE FOR RESIDUE BYC B 1003
25	CC7	SOFTWARE	GLU C:120 , GLU C:150 , HIS C:153 , GLU C:240 , FE C:1002 , BYC C:1003	BINDING SITE FOR RESIDUE FE C 1001
26	CC8	SOFTWARE	GLU C:150 , ASP C:211 , GLU C:240 , HIS C:243 , FE C:1001	BINDING SITE FOR RESIDUE FE C 1002
27	CC9	SOFTWARE	GLN C:116 , THR C:119 , GLU C:120 , SER C:123 , GLU C:150 , PHE C:193 , PHE C:206 , THR C:210 , ASP C:211 , ASP C:213 , GLY C:214 , GLN C:217 , LEU C:298 , GLY C:300 , ALA C:301 , SER C:304 , ASN C:306 , TYR C:310 , LYS C:316 , ASN C:357 , ILE C:399 , HOH C:575 , FE C:1001 , LYS D:398 , GLY D:400 , ALA D:403 , ASP D:404	BINDING SITE FOR RESIDUE BYC C 1003
28	DC1	SOFTWARE	GLU D:120 , GLU D:150 , HIS D:153 , GLU D:240 , FE D:1002 , BYC D:1003	BINDING SITE FOR RESIDUE FE D 1001
29	DC2	SOFTWARE	GLU D:150 , ASP D:211 , GLU D:240 , HIS D:243 , FE D:1001	BINDING SITE FOR RESIDUE FE D 1002
30	DC3	SOFTWARE	LYS C:398 , GLY C:400 , ALA C:403 , ASP C:404 , GLN D:116 , THR D:119 , GLU D:120 , SER D:123 , GLU D:150 , PHE D:193 , PHE D:206 , THR D:210 , ASP D:211 , ASP D:213 , GLY D:214 , LEU D:298 , GLY D:300 , ALA D:301 , SER D:304 , SER D:305 , ASN D:306 , TYR D:310 , LYS D:316 , ASN D:357 , ILE D:399 , HOH D:586 , FE D:1001	BINDING SITE FOR RESIDUE BYC D 1003

(no "SS Bond" information available for 3PM5)

(no "Cis Peptide Bond" information available for 3PM5)

(no "SAP(SNP)/Variant" information available for 3PM5)

(no "PROSITE Motif" information available for 3PM5)

(no "Exon" information available for 3PM5)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:472
 aligned with BOXB_AZOEV | Q9AIX7 from UniProtKB/Swiss-Prot  Length:473

    Alignment length:472
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                473 
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472| 
           BOXB_AZOEV     3 NYSERIPNNVNLNENKTLQRALEQWQPSFLNWWDDMGPENSSNYDVYLRTAVSVDPKGWADFGYVKMHDYRWGIFLAPQEGEKKITFGEHKGQDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEALLERRSGDEDNPRILTAFNEKTPDWLSFFMFTFITDRDGKFQLASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEVMKELGTDDPAKLRAAGVIDLPTLQKYLNFHYSVTSDLYGAEISSNAATYYTNGLKGRFEEEKIGDDHKLQNSEYEVMDVAGDKILTRHVPALSALNERLRDDWITDVQAGVDRWNRIPAKFGFDFRFTLPHKGFHRKIGMFADVHVSPDGRLISEAEWTHQHKNWLPTESDRLYVHSLMGRCLEPGKFANWIAAPARGINNQPVNFEYVRFN-   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeee........eeeeeehhhhh................................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhh....hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh...hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh......hhhhh.........eeeeeeee..eeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......................ee.....eehhhhhhhhhhhh..hhhhhhhhhhh..............................ee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pm5 A   3 NYSERIPNNVNLNENKTLQRALEQWQPSFLNWWDDMGPENSSNYDVYLRTAVSVDPKGWADFGYVKMHDYRWGIFLAPQEGEKKITFGEHKGQDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEALLERRSGDEDNPRILTAFNEKTPDWLSFFMFTFITDRDGKFQLASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEVMKELGTDDPAKLRAAGVIDLPTLQKYLNFHYSVTSDLYGAEISSNAATYYTNGLKGRFEEEKIGDDHKLQNSEYEVMDVAGDKILTRHVPALSALNERLRDDWITDVQAGVDRWNRIPAKFGFDFRFTLPHKGFHRKIGMFADVHVSPDGRLISEAEWTHQHKNWLPTESDRLYVHSLMGRCLEPGKFANWIAAPARGINNQPVNFEYVRFNW 474
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472

Chain B from PDB  Type:PROTEIN  Length:470
 aligned with BOXB_AZOEV | Q9AIX7 from UniProtKB/Swiss-Prot  Length:473

    Alignment length:470
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              473 
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464        |-
           BOXB_AZOEV     5 SERIPNNVNLNENKTLQRALEQWQPSFLNWWDDMGPENSSNYDVYLRTAVSVDPKGWADFGYVKMHDYRWGIFLAPQEGEKKITFGEHKGQDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEALLERRSGDEDNPRILTAFNEKTPDWLSFFMFTFITDRDGKFQLASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEVMKELGTDDPAKLRAAGVIDLPTLQKYLNFHYSVTSDLYGAEISSNAATYYTNGLKGRFEEEKIGDDHKLQNSEYEVMDVAGDKILTRHVPALSALNERLRDDWITDVQAGVDRWNRIPAKFGFDFRFTLPHKGFHRKIGMFADVHVSPDGRLISEAEWTHQHKNWLPTESDRLYVHSLMGRCLEPGKFANWIAAPARGINNQPVNFEYVRFN-   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeee........eeeeeee.hhh.............................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhh....hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh...hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh......hhhhh.........eeeeeeee..eeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......................ee.....eehhhhhhhhhhhh..hhhhhhhhhhh..............................ee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pm5 B   5 SERIPNNVNLNENKTLQRALEQWQPSFLNWWDDMGPENSSNYDVYLRTAVSVDPKGWADFGYVKMHDYRWGIFLAPQEGEKKITFGEHKGQDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEALLERRSGDEDNPRILTAFNEKTPDWLSFFMFTFITDRDGKFQLASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEVMKELGTDDPAKLRAAGVIDLPTLQKYLNFHYSVTSDLYGAEISSNAATYYTNGLKGRFEEEKIGDDHKLQNSEYEVMDVAGDKILTRHVPALSALNERLRDDWITDVQAGVDRWNRIPAKFGFDFRFTLPHKGFHRKIGMFADVHVSPDGRLISEAEWTHQHKNWLPTESDRLYVHSLMGRCLEPGKFANWIAAPARGINNQPVNFEYVRFNW 474
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474

Chain C from PDB  Type:PROTEIN  Length:475
 aligned with BOXB_AZOEV | Q9AIX7 from UniProtKB/Swiss-Prot  Length:473

    Alignment length:475
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  473  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470  |  
           BOXB_AZOEV     1 MINYSERIPNNVNLNENKTLQRALEQWQPSFLNWWDDMGPENSSNYDVYLRTAVSVDPKGWADFGYVKMHDYRWGIFLAPQEGEKKITFGEHKGQDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEALLERRSGDEDNPRILTAFNEKTPDWLSFFMFTFITDRDGKFQLASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEVMKELGTDDPAKLRAAGVIDLPTLQKYLNFHYSVTSDLYGAEISSNAATYYTNGLKGRFEEEKIGDDHKLQNSEYEVMDVAGDKILTRHVPALSALNERLRDDWITDVQAGVDRWNRIPAKFGFDFRFTLPHKGFHRKIGMFADVHVSPDGRLISEAEWTHQHKNWLPTESDRLYVHSLMGRCLEPGKFANWIAAPARGINNQPVNFEYVRFN--   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeee........eeeeeee.hhh.............................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhh....hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh...hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh......hhhhh.........eeeeeeee..eeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......................ee.....eehhhhhhhhhhhh..hhhhhhhhhhhh.............................ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pm5 C   1 MINYSERIPNNVNLNENKTLQRALEQWQPSFLNWWDDMGPENSSNYDVYLRTAVSVDPKGWADFGYVKMHDYRWGIFLAPQEGEKKITFGEHKGQDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEALLERRSGDEDNPRILTAFNEKTPDWLSFFMFTFITDRDGKFQLASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEVMKELGTDDPAKLRAAGVIDLPTLQKYLNFHYSVTSDLYGAEISSNAATYYTNGLKGRFEEEKIGDDHKLQNSEYEVMDVAGDKILTRHVPALSALNERLRDDWITDVQAGVDRWNRIPAKFGFDFRFTLPHKGFHRKIGMFADVHVSPDGRLISEAEWTHQHKNWLPTESDRLYVHSLMGRCLEPGKFANWIAAPARGINNQPVNFEYVRFNWS 475
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470

Chain D from PDB  Type:PROTEIN  Length:469
 aligned with BOXB_AZOEV | Q9AIX7 from UniProtKB/Swiss-Prot  Length:473

    Alignment length:469
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464         
           BOXB_AZOEV     5 SERIPNNVNLNENKTLQRALEQWQPSFLNWWDDMGPENSSNYDVYLRTAVSVDPKGWADFGYVKMHDYRWGIFLAPQEGEKKITFGEHKGQDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEALLERRSGDEDNPRILTAFNEKTPDWLSFFMFTFITDRDGKFQLASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEVMKELGTDDPAKLRAAGVIDLPTLQKYLNFHYSVTSDLYGAEISSNAATYYTNGLKGRFEEEKIGDDHKLQNSEYEVMDVAGDKILTRHVPALSALNERLRDDWITDVQAGVDRWNRIPAKFGFDFRFTLPHKGFHRKIGMFADVHVSPDGRLISEAEWTHQHKNWLPTESDRLYVHSLMGRCLEPGKFANWIAAPARGINNQPVNFEYVRFN 473
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------------------------------------------------------------------------PaaA_PaaC-3pm5D01 D:95-265                                                                                                                                                 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------PaaA_PaaC-3pm5D02 D:95-265                                                                                                                                                 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ------------------------------------------------------------------------------------------PaaA_PaaC-3pm5D03 D:95-265                                                                                                                                                 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ------------------------------------------------------------------------------------------PaaA_PaaC-3pm5D04 D:95-265                                                                                                                                                 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeee........eeeeeee.hhh.............................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhh....hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh...hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh......hhhhh.........eeeeeeee..eeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......................ee.....eehhhhhhhhhhhh..hhhhhhhhhhh..............................ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pm5 D   5 SERIPNNVNLNENKTLQRALEQWQPSFLNWWDDMGPENSSNYDVYLRTAVSVDPKGWADFGYVKMHDYRWGIFLAPQEGEKKITFGEHKGQDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEALLERRSGDEDNPRILTAFNEKTPDWLSFFMFTFITDRDGKFQLASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEVMKELGTDDPAKLRAAGVIDLPTLQKYLNFHYSVTSDLYGAEISSNAATYYTNGLKGRFEEEKIGDDHKLQNSEYEVMDVAGDKILTRHVPALSALNERLRDDWITDVQAGVDRWNRIPAKFGFDFRFTLPHKGFHRKIGMFADVHVSPDGRLISEAEWTHQHKNWLPTESDRLYVHSLMGRCLEPGKFANWIAAPARGINNQPVNFEYVRFN 473
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3PM5)

(no "CATH Domain" information available for 3PM5)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Ferritin (185)

Family: PaaA_PaaC (10)

Azoarcus evansii (3)

1a	PaaA_PaaC-3pm5D01	D:95-265
1b	PaaA_PaaC-3pm5D02	D:95-265
1c	PaaA_PaaC-3pm5D03	D:95-265
1d	PaaA_PaaC-3pm5D04	D:95-265

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (BOXB_AZOEV | Q9AIX7)

molecular function
	GO:0051213	dioxygenase activity	Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0019439	aromatic compound catabolic process	The chemical reactions and pathways resulting in the breakdown of aromatic compounds, any substance containing an aromatic carbon ring.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		BYC	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		FE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		GOL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PGE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PGO	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]
		BC7	[ RasMol ]	+environment [ RasMol ]
		BC8	[ RasMol ]	+environment [ RasMol ]
		BC9	[ RasMol ]	+environment [ RasMol ]
		CC1	[ RasMol ]	+environment [ RasMol ]
		CC2	[ RasMol ]	+environment [ RasMol ]
		CC3	[ RasMol ]	+environment [ RasMol ]
		CC4	[ RasMol ]	+environment [ RasMol ]
		CC5	[ RasMol ]	+environment [ RasMol ]
		CC6	[ RasMol ]	+environment [ RasMol ]
		CC7	[ RasMol ]	+environment [ RasMol ]
		CC8	[ RasMol ]	+environment [ RasMol ]
		CC9	[ RasMol ]	+environment [ RasMol ]
		DC1	[ RasMol ]	+environment [ RasMol ]
		DC2	[ RasMol ]	+environment [ RasMol ]
		DC3	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3pm5)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]
		Biological Unit 5	[ Jena3D ]
		Biological Unit 6	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format \| Biol. Unit 4 PNG format \| Biol. Unit 5 PNG format \| Biol. Unit 6 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	3pm5
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	BOXB_AZOEV \| Q9AIX7
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	1.14.12.21
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	BOXB_AZOEV \| Q9AIX7
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	BOXB_AZOEV \| Q9AIX7	:	3per 3pf7 3q1g

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (7, 30)

Sites (30, 30)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 4)

Gene Ontology (5, 5)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File