3PM0 - JenaLib

Asymmetric/Biological Unit (55, 55)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_028735	Q	68	R	CP1B1_HUMAN	Polymorphism	9282670	A	Q	68	R
02	UniProt	VAR_054229	L	77	P	CP1B1_HUMAN	Disease (GLC3A)	---	A	L	77	P
03	UniProt	VAR_028736	Y	81	N	CP1B1_HUMAN	Disease (POAG)	9282671	A	Y	81	N
04	UniProt	VAR_054230	A	115	P	CP1B1_HUMAN	Disease (GLC3A)	764338357	A	A	115	P
05	UniProt	VAR_011753	A	119	S	CP1B1_HUMAN	Polymorphism	1056827	A	S	119	S
06	UniProt	VAR_054231	M	132	R	CP1B1_HUMAN	Disease (GLC3A)	---	A	M	132	R
07	UniProt	VAR_054232	Q	144	H	CP1B1_HUMAN	Polymorphism	---	A	Q	144	H
08	UniProt	VAR_054233	Q	144	P	CP1B1_HUMAN	Disease (GLC3A)	---	A	Q	144	P
09	UniProt	VAR_054234	Q	144	R	CP1B1_HUMAN	Disease (GLC3A)	753847648	A	Q	144	R
10	UniProt	VAR_054235	R	145	W	CP1B1_HUMAN	Disease (POAG)	---	A	R	145	W
11	UniProt	VAR_054236	G	184	S	CP1B1_HUMAN	Polymorphism	---	A	G	184	S
12	UniProt	VAR_054237	A	189	P	CP1B1_HUMAN	Unclassified	---	A	A	189	P
13	UniProt	VAR_054238	D	192	V	CP1B1_HUMAN	Disease (GLC3A)	---	A	D	192	V
14	UniProt	VAR_054239	P	193	L	CP1B1_HUMAN	Disease (GLC3A)	529769268	A	P	193	L
15	UniProt	VAR_054240	V	198	I	CP1B1_HUMAN	Disease (GLC3A)	59472972	A	V	198	I
16	UniProt	VAR_054241	N	203	S	CP1B1_HUMAN	Disease (GLC3A)	---	A	N	203	S
17	UniProt	VAR_018869	S	206	N	CP1B1_HUMAN	Polymorphism	9341248	A	S	206	N
18	UniProt	VAR_054242	S	215	I	CP1B1_HUMAN	Disease (GLC3A)	72549384	A	S	215	I
19	UniProt	VAR_054243	E	229	K	CP1B1_HUMAN	Disease (POAG)	57865060	A	E	229	K
20	UniProt	VAR_054244	G	232	R	CP1B1_HUMAN	Disease (POAG)	104893628	A	G	232	R
21	UniProt	VAR_054245	S	239	R	CP1B1_HUMAN	Disease (GLC3A)	---	A	S	239	R
22	UniProt	VAR_018870	R	266	L	CP1B1_HUMAN	Polymorphism	9341250	A	R	266	L
23	UniProt	VAR_054247	V	320	L	CP1B1_HUMAN	Disease (GLC3A)	72549382	A	V	320	L
24	UniProt	VAR_054248	A	330	F	CP1B1_HUMAN	Unclassified (GLC3A)	---	A	A	330	F
25	UniProt	VAR_054249	A	330	S	CP1B1_HUMAN	Unclassified	---	A	A	330	S
26	UniProt	VAR_054251	L	345	F	CP1B1_HUMAN	Disease (POAG)	66583685	A	L	345	F
27	UniProt	VAR_054253	V	364	M	CP1B1_HUMAN	Disease (GLC3A)	72549379	A	V	364	M
28	UniProt	VAR_001245	G	365	W	CP1B1_HUMAN	Disease (GLC3A)	55771538	A	G	365	W
29	UniProt	VAR_016034	R	368	H	CP1B1_HUMAN	Disease (GLC3A)	79204362	A	R	368	H
30	UniProt	VAR_001246	D	374	N	CP1B1_HUMAN	Disease (GLC3A)	28936413	A	D	374	N
31	UniProt	VAR_008351	P	379	L	CP1B1_HUMAN	Polymorphism	56305281	A	P	379	L
32	UniProt	VAR_008352	E	387	K	CP1B1_HUMAN	Disease (POAG)	55989760	A	E	387	K
33	UniProt	VAR_054254	A	388	T	CP1B1_HUMAN	Disease (GLC3A)	---	A	A	388	T
34	UniProt	VAR_054255	R	390	C	CP1B1_HUMAN	Disease (GLC3A)	148542782	A	R	390	C
35	UniProt	VAR_008353	R	390	H	CP1B1_HUMAN	Disease (GLC3A)	56010818	A	R	390	H
36	UniProt	VAR_054256	R	390	S	CP1B1_HUMAN	Disease (GLC3A)	148542782	A	R	390	S
37	UniProt	VAR_054257	I	399	S	CP1B1_HUMAN	Disease (GLC3A)	72549378	A	I	399	S
38	UniProt	VAR_054258	V	409	F	CP1B1_HUMAN	Disease (POAG)	---	A	V	409	F
39	UniProt	VAR_054259	V	422	G	CP1B1_HUMAN	Polymorphism	---	A	V	422	G
40	UniProt	VAR_054260	N	423	Y	CP1B1_HUMAN	Disease (POAG)	104893629	A	N	423	Y
41	UniProt	VAR_001248	L	432	V	CP1B1_HUMAN	Polymorphism	1056836	A	L	432	V
42	UniProt	VAR_008354	P	437	L	CP1B1_HUMAN	Disease (GLC3A)	56175199	A	P	437	L
43	UniProt	VAR_028737	D	441	H	CP1B1_HUMAN	Polymorphism	4986887	A	D	441	H
44	UniProt	VAR_018774	A	443	G	CP1B1_HUMAN	Unclassified (POAG)	4986888	A	A	443	G
45	UniProt	VAR_054261	R	444	Q	CP1B1_HUMAN	Disease (GLC3A)	72549376	A	R	444	Q
46	UniProt	VAR_054262	F	445	C	CP1B1_HUMAN	Disease (GLC3A)	---	A	F	445	C
47	UniProt	VAR_028738	D	449	E	CP1B1_HUMAN	Polymorphism	1056837	A	D	449	E
48	UniProt	VAR_008355	N	453	S	CP1B1_HUMAN	Polymorphism	1800440	A	N	453	S
49	UniProt	VAR_054263	G	466	D	CP1B1_HUMAN	Disease (GLC3A)	868208502	A	G	466	D
50	UniProt	VAR_001247	R	469	W	CP1B1_HUMAN	Disease (GLC3A)	28936701	A	R	469	W
51	UniProt	VAR_054264	E	499	G	CP1B1_HUMAN	Disease (GLC3A)	72549372	A	E	499	G
52	UniProt	VAR_054265	S	515	L	CP1B1_HUMAN	Unclassified (POAG)	---	A	S	515	L
53	UniProt	VAR_054266	V	518	A	CP1B1_HUMAN	Polymorphism	---	A	V	518	A
54	UniProt	VAR_054267	R	523	T	CP1B1_HUMAN	Disease (POAG)	---	A	R	523	T
55	UniProt	VAR_054268	D	530	G	CP1B1_HUMAN	Disease (POAG)	---	A	D	530	G

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:459
 aligned with CP1B1_HUMAN | Q16678 from UniProtKB/Swiss-Prot  Length:543

    Alignment length:463
                                    77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527   
          CP1B1_HUMAN    68 QAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPAFASFRVVSGGRSMAFGHYSEHWKVQRRAAHSMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRGSADGAFLDPRPLTVVAVANVMSAVCFGCRYSHDDPEFRELLSHNEEFGRTVGAGSLVDVMPWLQYFPNPVRTVFREFEQLNRNFSNFILDKFLRHCESLRPGAAPRDMMDAFILSAEKKAAGDSHGGGARLDLENVPATITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVGRDRLPCMGDQPNLPYVLAFLYEAMRFSSFVPVTIPHATTANTSVLGYHIPKDTVVFVNQWSVNHDPLKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCIGEELSKMQLFLFISILAHQCDFRANPNEPAKMNFSYGLTIKPKSFKVNVTLRESMELLD 530
               SCOP domains d3pm0a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains p450-3pm0A01 A:68-520                                                                                                                                                                                                                                                                                                                                                                                                                                                ---------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhhh...........hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.......hhhhhhhh.hhhhhhhhhh.......hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh..----....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.......ee....eee..eee....eeee.hhhhhh...........hhhhhh......hhhhhh.............hhhhhhhhhhhhhhhhhhheeeee.........eee...eee....eeeee........ Sec.struct. author
             SAPs(SNPs) (1) R--------P---N---------------------------------P---S------------R-----------HW--------------------------------------S----P--VL----I----S--N--------I-------------K--R------R--------------------------L-----------------------------------------------------L---------F--------------F------------------MW--H-----N----L-------KT-C--------S---------F------------GY--------V----L---H-GQC---E---S------------D--W-----------------------------G---------------L--A----T------G SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------------------------------------------------------P-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-----------------------------------------------------------H-------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ----------------------------------------------------------------------------R-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOCHROME---------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pm0 A  68 QAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASFRVVSGGRSMAFGHYSEHWKVQRRAAHSMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRGSADGAFLDPRPLTVVAVANVMSAVCFGCRYSHDDPEFRELLSHNEEFGRTVGAGSLVDVMPWLQYFPNPVRTVFREFEQLNRNFSNFILDKFLRHCESLRPGAAPRDMMDAFILSAEKKAAGD----GARLDLENVPATITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVGRDRLPCMGDQPNLPYVLAFLYEAMRFSSFVPVTIPHATTANTSVLGYHIPKDTVVFVNQWSVNHDPLKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCIGEELSKMQLFLFISILAHQCDFRANPNEPAKMNFSYGLTIKPKSFKVNVTLRESMELLD 530
                                    77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307    |  317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527   
                                                                                                                                                                                                                                                                         307  312

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (52, 52)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (CP1B1_HUMAN | Q16678)

molecular function
	GO:0070330	aromatase activity	Catalysis of the reduction of an aliphatic ring to yield an aromatic ring.
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004497	monooxygenase activity	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
	GO:0016712	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen	Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced flavin or flavoprotein and one other donor, and one atom of oxygen is incorporated into one donor.
	GO:0019825	oxygen binding	Interacting selectively and non-covalently with oxygen (O2).
biological process
	GO:0001525	angiogenesis	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels.
	GO:0019369	arachidonic acid metabolic process	The chemical reactions and pathways involving arachidonic acid, a straight chain fatty acid with 20 carbon atoms and four double bonds per molecule. Arachidonic acid is the all-Z-(5,8,11,14)-isomer.
	GO:0048514	blood vessel morphogenesis	The process in which the anatomical structures of blood vessels are generated and organized. The blood vessel is the vasculature carrying blood.
	GO:0007155	cell adhesion	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
	GO:0006725	cellular aromatic compound metabolic process	The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.
	GO:0070301	cellular response to hydrogen peroxide	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus.
	GO:0071407	cellular response to organic cyclic compound	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus.
	GO:0030199	collagen fibril organization	Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix.
	GO:0043542	endothelial cell migration	The orderly movement of an endothelial cell into the extracellular matrix to form an endothelium.
	GO:0071603	endothelial cell-cell adhesion	The attachment of an endothelial cell to another endothelial cell via adhesion molecules.
	GO:0019373	epoxygenase P450 pathway	The chemical reactions and pathways by which arachidonic acid is converted to other compounds including epoxyeicosatrienoic acids and dihydroxyeicosatrienoic acids.
	GO:0008210	estrogen metabolic process	The chemical reactions and pathways involving estrogens, C18 steroid hormones that can stimulate the development of female sexual characteristics. Also found in plants.
	GO:0008631	intrinsic apoptotic signaling pathway in response to oxidative stress	A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced in response to oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, and ends when the execution phase of apoptosis is triggered.
	GO:0046466	membrane lipid catabolic process	The chemical reactions and pathways resulting in the breakdown of membrane lipids, any lipid found in or associated with a biological membrane.
	GO:0032088	negative regulation of NF-kappaB transcription factor activity	Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of the transcription factor NF-kappaB.
	GO:0033629	negative regulation of cell adhesion mediated by integrin	Any process that stops, prevents, or reduces the frequency, rate, or extent of cell adhesion mediated by integrin.
	GO:0030336	negative regulation of cell migration	Any process that stops, prevents, or reduces the frequency, rate or extent of cell migration.
	GO:0008285	negative regulation of cell proliferation	Any process that stops, prevents or reduces the rate or extent of cell proliferation.
	GO:0006809	nitric oxide biosynthetic process	The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water.
	GO:0097267	omega-hydroxylase P450 pathway	The chemical reactions and pathways by which arachidonic acid is converted to other compounds initially by omega-hydroxylation.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0046427	positive regulation of JAK-STAT cascade	Any process that activates or increases the frequency, rate or extent of the JAK-STAT signaling pathway activity.
	GO:0045766	positive regulation of angiogenesis	Any process that activates or increases angiogenesis.
	GO:0043065	positive regulation of apoptotic process	Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process.
	GO:0010575	positive regulation of vascular endothelial growth factor production	Any process that increases or activates the frequency, rate, or extent of production of vascular endothelial growth factor.
	GO:2000377	regulation of reactive oxygen species metabolic process	Any process that modulates the frequency, rate or extent of reactive oxygen species metabolic process.
	GO:0009636	response to toxic substance	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxic stimulus.
	GO:0061298	retina vasculature development in camera-type eye	The process whose specific outcome is the progression of the vasculature of the retina over time, from its formation to the mature structure.
	GO:0061304	retinal blood vessel morphogenesis	The process whose specific outcome is the progression of a blood vessel of the retina over time, from its formation to the mature structure.
	GO:0042574	retinal metabolic process	The chemical reactions and pathways involving retinal, a compound that plays an important role in the visual process in most vertebrates. In the retina, retinal combines with opsins to form visual pigments. Retinal is one of the forms of vitamin A.
	GO:0042572	retinol metabolic process	The chemical reactions and pathways involving retinol, one of the three compounds that makes up vitamin A.
	GO:0008202	steroid metabolic process	The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.
	GO:0016125	sterol metabolic process	The chemical reactions and pathways involving sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule.
	GO:0009404	toxin metabolic process	The chemical reactions and pathways involving a toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism.
	GO:0002930	trabecular meshwork development	The progression of the trabecular meshwork over time, from its formation to the mature structure. The trabecular meshwork is a fenestrated endothelial-like tissue situated at the intersection of the cornea and the iris. The trabecular meshwork provides drainage for the aqueous humor.
	GO:0007601	visual perception	The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image.
	GO:0006805	xenobiotic metabolic process	The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide.
cellular component
	GO:0005783	endoplasmic reticulum	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
	GO:0005789	endoplasmic reticulum membrane	The lipid bilayer surrounding the endoplasmic reticulum.
	GO:0043231	intracellular membrane-bounded organelle	Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0031090	organelle membrane	A membrane that is one of the two lipid bilayers of an organelle envelope or the outermost membrane of single membrane bound organelle.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (55, 55)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (52, 52)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File