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Asym. Unit
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Asym.Unit (82 KB)
Biol.Unit 1 (77 KB)
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(1)
Title
:
STRUCTURAL CHARACTERIZATION OF THE COMPLEX BETWEEN ALPHA-NAPHTHOFLAVONE AND HUMAN CYTOCHROME P450 1B1 (CYP1B1)
Authors
:
A. Wang, C. D. Stout, E. F. Johnson
Date
:
15 Nov 10 (Deposition) - 08 Dec 10 (Release) - 02 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cyp1B1, P450 1B1, P450, Monooxygenase, Alpha-Naphthoflavone, Heme, 17Beta-Estradiol, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Wang, U. Savas, C. D. Stout, E. F. Johnson
Structural Characterization Of The Complex Between {Alpha}-Naphthoflavone And Human Cytochrome P450 1B1.
J. Biol. Chem. V. 286 5736 2011
[
close entry info
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: 2-PHENYL-4H-BENZO[H]CHROMEN-4-ONE (BHFa)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BHF
1
Ligand/Ion
2-PHENYL-4H-BENZO[H]CHROMEN-4-ONE
2
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:117 , MET A:132 , ALA A:133 , TRP A:141 , ARG A:145 , MET A:152 , ILE A:327 , ALA A:330 , SER A:331 , THR A:334 , LEU A:335 , PHE A:394 , VAL A:395 , THR A:398 , ILE A:399 , HIS A:401 , GLN A:424 , ILE A:462 , PHE A:463 , SER A:464 , ARG A:468 , CYS A:470 , ILE A:471 , SER A:476 , BHF A:800
BINDING SITE FOR RESIDUE HEM A 900
2
AC2
SOFTWARE
PHE A:134 , ASN A:228 , PHE A:231 , LEU A:264 , ASP A:326 , ALA A:330 , THR A:334 , LEU A:509 , HEM A:900
BINDING SITE FOR RESIDUE BHF A 800
[
close Site info
]
SAPs(SNPs)/Variants
(55, 55)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_028735 (Q68R, chain A, )
02: VAR_054229 (L77P, chain A, )
03: VAR_028736 (Y81N, chain A, )
04: VAR_054230 (A115P, chain A, )
05: VAR_011753 (S119S, chain A, )
06: VAR_054231 (M132R, chain A, )
07: VAR_054232 (Q144H, chain A, )
08: VAR_054233 (Q144P, chain A, )
09: VAR_054234 (Q144R, chain A, )
10: VAR_054235 (R145W, chain A, )
11: VAR_054236 (G184S, chain A, )
12: VAR_054237 (A189P, chain A, )
13: VAR_054238 (D192V, chain A, )
14: VAR_054239 (P193L, chain A, )
15: VAR_054240 (V198I, chain A, )
16: VAR_054241 (N203S, chain A, )
17: VAR_018869 (S206N, chain A, )
18: VAR_054242 (S215I, chain A, )
19: VAR_054243 (E229K, chain A, )
20: VAR_054244 (G232R, chain A, )
21: VAR_054245 (S239R, chain A, )
22: VAR_018870 (R266L, chain A, )
23: VAR_054247 (V320L, chain A, )
24: VAR_054248 (A330F, chain A, )
25: VAR_054249 (A330S, chain A, )
26: VAR_054251 (L345F, chain A, )
27: VAR_054253 (V364M, chain A, )
28: VAR_001245 (G365W, chain A, )
29: VAR_016034 (R368H, chain A, )
30: VAR_001246 (D374N, chain A, )
31: VAR_008351 (P379L, chain A, )
32: VAR_008352 (E387K, chain A, )
33: VAR_054254 (A388T, chain A, )
34: VAR_054255 (R390C, chain A, )
35: VAR_008353 (R390H, chain A, )
36: VAR_054256 (R390S, chain A, )
37: VAR_054257 (I399S, chain A, )
38: VAR_054258 (V409F, chain A, )
39: VAR_054259 (V422G, chain A, )
40: VAR_054260 (N423Y, chain A, )
41: VAR_001248 (L432V, chain A, )
42: VAR_008354 (P437L, chain A, )
43: VAR_028737 (D441H, chain A, )
44: VAR_018774 (A443G, chain A, )
45: VAR_054261 (R444Q, chain A, )
46: VAR_054262 (F445C, chain A, )
47: VAR_028738 (D449E, chain A, )
48: VAR_008355 (N453S, chain A, )
49: VAR_054263 (G466D, chain A, )
50: VAR_001247 (R469W, chain A, )
51: VAR_054264 (E499G, chain A, )
52: VAR_054265 (S515L, chain A, )
53: VAR_054266 (V518A, chain A, )
54: VAR_054267 (R523T, chain A, )
55: VAR_054268 (D530G, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_028735
Q
68
R
CP1B1_HUMAN
Polymorphism
9282670
A
Q
68
R
02
UniProt
VAR_054229
L
77
P
CP1B1_HUMAN
Disease (GLC3A)
---
A
L
77
P
03
UniProt
VAR_028736
Y
81
N
CP1B1_HUMAN
Disease (POAG)
9282671
A
Y
81
N
04
UniProt
VAR_054230
A
115
P
CP1B1_HUMAN
Disease (GLC3A)
---
A
A
115
P
05
UniProt
VAR_011753
A
119
S
CP1B1_HUMAN
Polymorphism
1056827
A
S
119
S
06
UniProt
VAR_054231
M
132
R
CP1B1_HUMAN
Disease (GLC3A)
---
A
M
132
R
07
UniProt
VAR_054232
Q
144
H
CP1B1_HUMAN
Polymorphism
---
A
Q
144
H
08
UniProt
VAR_054233
Q
144
P
CP1B1_HUMAN
Disease (GLC3A)
---
A
Q
144
P
09
UniProt
VAR_054234
Q
144
R
CP1B1_HUMAN
Disease (GLC3A)
---
A
Q
144
R
10
UniProt
VAR_054235
R
145
W
CP1B1_HUMAN
Disease (POAG)
---
A
R
145
W
11
UniProt
VAR_054236
G
184
S
CP1B1_HUMAN
Polymorphism
---
A
G
184
S
12
UniProt
VAR_054237
A
189
P
CP1B1_HUMAN
Unclassified
---
A
A
189
P
13
UniProt
VAR_054238
D
192
V
CP1B1_HUMAN
Disease (GLC3A)
---
A
D
192
V
14
UniProt
VAR_054239
P
193
L
CP1B1_HUMAN
Disease (GLC3A)
---
A
P
193
L
15
UniProt
VAR_054240
V
198
I
CP1B1_HUMAN
Disease (GLC3A)
59472972
A
V
198
I
16
UniProt
VAR_054241
N
203
S
CP1B1_HUMAN
Disease (GLC3A)
---
A
N
203
S
17
UniProt
VAR_018869
S
206
N
CP1B1_HUMAN
Polymorphism
9341248
A
S
206
N
18
UniProt
VAR_054242
S
215
I
CP1B1_HUMAN
Disease (GLC3A)
---
A
S
215
I
19
UniProt
VAR_054243
E
229
K
CP1B1_HUMAN
Disease (POAG)
57865060
A
E
229
K
20
UniProt
VAR_054244
G
232
R
CP1B1_HUMAN
Disease (POAG)
---
A
G
232
R
21
UniProt
VAR_054245
S
239
R
CP1B1_HUMAN
Disease (GLC3A)
---
A
S
239
R
22
UniProt
VAR_018870
R
266
L
CP1B1_HUMAN
Polymorphism
9341250
A
R
266
L
23
UniProt
VAR_054247
V
320
L
CP1B1_HUMAN
Disease (GLC3A)
---
A
V
320
L
24
UniProt
VAR_054248
A
330
F
CP1B1_HUMAN
Unclassified
---
A
A
330
F
25
UniProt
VAR_054249
A
330
S
CP1B1_HUMAN
Unclassified
---
A
A
330
S
26
UniProt
VAR_054251
L
345
F
CP1B1_HUMAN
Disease (POAG)
---
A
L
345
F
27
UniProt
VAR_054253
V
364
M
CP1B1_HUMAN
Disease (GLC3A)
---
A
V
364
M
28
UniProt
VAR_001245
G
365
W
CP1B1_HUMAN
Disease (GLC3A)
55771538
A
G
365
W
29
UniProt
VAR_016034
R
368
H
CP1B1_HUMAN
Disease (GLC3A)
28936414
A
R
368
H
30
UniProt
VAR_001246
D
374
N
CP1B1_HUMAN
Disease (GLC3A)
28936413
A
D
374
N
31
UniProt
VAR_008351
P
379
L
CP1B1_HUMAN
Polymorphism
56305281
A
P
379
L
32
UniProt
VAR_008352
E
387
K
CP1B1_HUMAN
Disease (POAG)
55989760
A
E
387
K
33
UniProt
VAR_054254
A
388
T
CP1B1_HUMAN
Disease (GLC3A)
---
A
A
388
T
34
UniProt
VAR_054255
R
390
C
CP1B1_HUMAN
Disease (GLC3A)
---
A
R
390
C
35
UniProt
VAR_008353
R
390
H
CP1B1_HUMAN
Disease (GLC3A)
56010818
A
R
390
H
36
UniProt
VAR_054256
R
390
S
CP1B1_HUMAN
Disease (GLC3A)
---
A
R
390
S
37
UniProt
VAR_054257
I
399
S
CP1B1_HUMAN
Disease (GLC3A)
---
A
I
399
S
38
UniProt
VAR_054258
V
409
F
CP1B1_HUMAN
Disease (POAG)
---
A
V
409
F
39
UniProt
VAR_054259
V
422
G
CP1B1_HUMAN
Polymorphism
---
A
V
422
G
40
UniProt
VAR_054260
N
423
Y
CP1B1_HUMAN
Disease (POAG)
---
A
N
423
Y
41
UniProt
VAR_001248
L
432
V
CP1B1_HUMAN
Polymorphism
1056836
A
L
432
V
42
UniProt
VAR_008354
P
437
L
CP1B1_HUMAN
Disease (GLC3A)
56175199
A
P
437
L
43
UniProt
VAR_028737
D
441
H
CP1B1_HUMAN
Polymorphism
4986887
A
D
441
H
44
UniProt
VAR_018774
A
443
G
CP1B1_HUMAN
Unclassified
4986888
A
A
443
G
45
UniProt
VAR_054261
R
444
Q
CP1B1_HUMAN
Disease (GLC3A)
---
A
R
444
Q
46
UniProt
VAR_054262
F
445
C
CP1B1_HUMAN
Disease (GLC3A)
---
A
F
445
C
47
UniProt
VAR_028738
D
449
E
CP1B1_HUMAN
Polymorphism
1056837
A
D
449
E
48
UniProt
VAR_008355
N
453
S
CP1B1_HUMAN
Polymorphism
1800440
A
N
453
S
49
UniProt
VAR_054263
G
466
D
CP1B1_HUMAN
Disease (GLC3A)
---
A
G
466
D
50
UniProt
VAR_001247
R
469
W
CP1B1_HUMAN
Disease (GLC3A)
28936701
A
R
469
W
51
UniProt
VAR_054264
E
499
G
CP1B1_HUMAN
Disease (GLC3A)
---
A
E
499
G
52
UniProt
VAR_054265
S
515
L
CP1B1_HUMAN
Unclassified
---
A
S
515
L
53
UniProt
VAR_054266
V
518
A
CP1B1_HUMAN
Polymorphism
---
A
V
518
A
54
UniProt
VAR_054267
R
523
T
CP1B1_HUMAN
Disease (POAG)
---
A
R
523
T
55
UniProt
VAR_054268
D
530
G
CP1B1_HUMAN
Disease (POAG)
---
A
D
530
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_P450 (A:463-472)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_P450
PS00086
Cytochrome P450 cysteine heme-iron ligand signature.
CP1B1_HUMAN
463-472
1
A:463-472
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3pm0a_ (A:)
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Protein Domains
(
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(
)
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(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome P450
(480)
Superfamily
:
Cytochrome P450
(480)
Family
:
automated matches
(157)
Protein domain
:
automated matches
(157)
Human (Homo sapiens) [TaxId: 9606]
(27)
1a
d3pm0a_
A:
[
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_p450_3pm0A01 (A:68-520)
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(
)
Clan
:
no clan defined [family: p450]
(161)
Family
:
p450
(161)
Homo sapiens (Human)
(33)
1a
p450-3pm0A01
A:68-520
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