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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ENE, A VIRAL RNA STABILITY ELEMENT, IN COMPLEX WITH A9 RNA
 
Authors :  R. M. Mitton-Fry, S. J. Degregorio, J. Wang, T. A. Steitz, J. A. Steitz
Date :  01 Oct 10  (Deposition) - 08 Dec 10  (Release) - 08 Dec 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Major Groove Triple Helix, Viral Non-Coding Rna, Stability Element, Nucleus, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. M. Mitton-Fry, S. J. Degregorio, J. Wang, T. A. Steitz, J. A. Steitz
Poly(A) Tail Recognition By A Viral Rna Element Through Assembly Of A Triple Helix.
Science V. 330 1244 2010
PubMed-ID: 21109672  |  Reference-DOI: 10.1126/SCIENCE.1195858

(-) Compounds

Molecule 1 - CORE ENE HAIRPIN FROM KSHV PAN RNA
    Chains: A, C, E, G
    Engineered: YES
    Fragment: HAIRPIN FROM KSHV PAN RNA
    Other Details: IN VITRO TRANSCRIBED FROM PLASMID TEMPLATE DNA USING T7 RNA POLYMERASE
    Synthetic: YES
 
Molecule 2 - OLIGO(A)9 RNA
    Chains: B, D, F, H
    Engineered: YES
    Other Details: SYNTHESIZED
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1GTP4Mod. NucleotideGUANOSINE-5'-TRIPHOSPHATE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1GTP1Mod. NucleotideGUANOSINE-5'-TRIPHOSPHATE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1GTP1Mod. NucleotideGUANOSINE-5'-TRIPHOSPHATE
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1GTP1Mod. NucleotideGUANOSINE-5'-TRIPHOSPHATE
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1GTP1Mod. NucleotideGUANOSINE-5'-TRIPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 3P22)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3P22)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 3P22)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:RNA  Length:40
                                                                       
                  3p22 A  1 gGCUGGGUUUUUCCUUCGAAAGAAGGUUUUUAUCCCAGUC 40
                            |       10        20        30        40
                            |                                       
                            1-GTP                                   


Chain B from PDB  Type:RNA  Length:9
                                        
                  3p22 B  1 AAAAAAAAA  9


Chain C from PDB  Type:RNA  Length:40
                                                                       
                  3p22 C  1 gGCUGGGUUUUUCCUUCGAAAGAAGGUUUUUAUCCCAGUC 40
                            |       10        20        30        40
                            1-GTP                                   


Chain D from PDB  Type:RNA  Length:8
                                       
                  3p22 D  1 AAAAAAAA  8


Chain E from PDB  Type:RNA  Length:40
                                                                       
                  3p22 E  1 gGCUGGGUUUUUCCUUCGAAAGAAGGUUUUUAUCCCAGUC 40
                            |       10        20        30        40
                            1-GTP                                   


Chain F from PDB  Type:RNA  Length:9
                                        
                  3p22 F  1 AAAAAAAAA  9


Chain G from PDB  Type:RNA  Length:40
                                                                       
                  3p22 G  1 gGCUGGGUUUUUCCUUCGAAAGAAGGUUUUUAUCCCAGUC 40
                            |       10        20        30        40
                            1-GTP                                   


Chain H from PDB  Type:RNA  Length:8
                                       
                  3p22 H  1 AAAAAAAA  8
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3P22)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3P22)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3P22)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3P22)

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  3p22
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 Related Entries

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