3P1T - JenaLib

Title :   CRYSTAL STRUCTURE OF A PUTATIVE AMINOTRANSFERASE (BPSL1724) FROM BURKHOLDERIA PSEUDOMALLEI K96243 AT 2.60 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   30 Sep 10 (Deposition) - 20 Oct 10 (Release) - 20 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Plp-Dependent Transferase-Like, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Aminotransferase (Bpsl1724) From Burkholderia Pseudomallei K96243 At 2. 60 A Resolution
To Be Published
PubMed: search

Compounds

Molecule 1 - PUTATIVE HISTIDINOL-PHOSPHATE AMINOTRANSFERASE
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	SPEEDET
	Expression System Strain	:	HK100
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	BPSL1724
	Organism Scientific	:	BURKHOLDERIA PSEUDOMALLEI
	Organism Taxid	:	28450

Structural Features

Chains, Units

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (4, 38)

Asymmetric Unit (4, 38)

No.	Name	Count	Type	Full Name
1	EDO	13	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	16	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	4	Ligand/Ion	SULFATE ION
4	TLA	5	Ligand/Ion	L(+)-TARTARIC ACID

Biological Unit 1 (4, 20)

No.	Name	Count	Type	Full Name
1	EDO	7	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	8	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	3	Ligand/Ion	SULFATE ION
4	TLA	2	Ligand/Ion	L(+)-TARTARIC ACID

Biological Unit 2 (4, 18)

No.	Name	Count	Type	Full Name
1	EDO	6	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	8	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	1	Ligand/Ion	SULFATE ION
4	TLA	3	Ligand/Ion	L(+)-TARTARIC ACID

Sites (21, 21)

Asymmetric Unit (21, 21)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:258 , ARG A:265 , SER A:273 , EDO A:346	BINDING SITE FOR RESIDUE SO4 A 338
02	AC2	SOFTWARE	PHE A:22 , ASN A:145 , TYR A:172 , LYS A:197 , LYS A:301 , PHE A:306 , ARG A:313 , HOH A:897 , HOH A:908 , TYR B:47	BINDING SITE FOR RESIDUE TLA A 343
03	AC3	SOFTWARE	ARG A:257 , ARG A:258 , SER A:274 , SO4 A:338	BINDING SITE FOR RESIDUE EDO A 346
04	AC4	SOFTWARE	ASN A:69 , SER A:213 , GLU A:214	BINDING SITE FOR RESIDUE EDO A 349
05	AC5	SOFTWARE	ALA A:285 , GLU A:287 , ARG A:288 , HOH A:677 , HOH A:829	BINDING SITE FOR RESIDUE EDO A 350
06	AC6	SOFTWARE	ARG B:258 , ARG B:265 , SER B:273 , TLA B:342 , HOH B:916	BINDING SITE FOR RESIDUE SO4 B 339
07	AC7	SOFTWARE	ASN B:145 , LYS B:301 , ARG B:313 , HOH B:909 , HOH B:911	BINDING SITE FOR RESIDUE SO4 B 340
08	AC8	SOFTWARE	ARG B:257 , ARG B:258 , ALA B:261 , SER B:273 , SER B:274 , GLU B:275 , SO4 B:339 , HOH B:916	BINDING SITE FOR RESIDUE TLA B 342
09	AC9	SOFTWARE	ASN B:283 , GLY B:286 , ASP B:302 , HIS B:309 , HIS B:310	BINDING SITE FOR RESIDUE EDO B 347
10	BC1	SOFTWARE	GLU A:115 , SER B:64	BINDING SITE FOR RESIDUE EDO B 351
11	BC2	SOFTWARE	ILE B:76 , PHE B:99 , ASN B:145 , ASP B:169 , THR B:171	BINDING SITE FOR RESIDUE EDO B 353
12	BC3	SOFTWARE	ALA B:285 , GLU B:287 , ARG B:288 , ARG B:291	BINDING SITE FOR RESIDUE EDO B 356
13	BC4	SOFTWARE	PHE C:22 , ASN C:145 , LYS C:197 , ARG C:205 , LYS C:301 , PHE C:306 , ARG C:313 , HOH C:913 , HOH C:915 , TYR D:47	BINDING SITE FOR RESIDUE TLA C 344
14	BC5	SOFTWARE	ARG C:257 , ARG C:258 , ARG C:265 , SER C:273 , SER C:274	BINDING SITE FOR RESIDUE TLA C 345
15	BC6	SOFTWARE	GLY C:286 , GLU C:287 , LEU C:290 , ASP C:302 , HIS C:309 , HIS C:310	BINDING SITE FOR RESIDUE EDO C 348
16	BC7	SOFTWARE	GLU C:282	BINDING SITE FOR RESIDUE EDO C 352
17	BC8	SOFTWARE	ALA C:285 , GLU C:287 , ARG C:288 , HIS C:310 , HOH C:870 , ARG D:54 , LYS D:58 , GLU D:237	BINDING SITE FOR RESIDUE EDO C 357
18	BC9	SOFTWARE	ARG D:258 , ARG D:265 , SER D:273 , TLA D:341	BINDING SITE FOR RESIDUE SO4 D 337
19	CC1	SOFTWARE	ARG D:257 , ARG D:258 , SER D:273 , SER D:274 , GLU D:275 , SO4 D:337	BINDING SITE FOR RESIDUE TLA D 341
20	CC2	SOFTWARE	PHE D:99 , ASN D:145 , ASP D:169 , THR D:171	BINDING SITE FOR RESIDUE EDO D 354
21	CC3	SOFTWARE	ALA D:285 , GLU D:287 , ARG D:288 , ARG D:291	BINDING SITE FOR RESIDUE EDO D 358

SS Bonds (0, 0)

Cis Peptide Bonds (12, 12)

Asymmetric Unit

No.	Residues
1	Trp A:96	-	Pro A:97
2	Asn A:142	-	Pro A:143
3	Asn A:145	-	Pro A:146
4	Trp B:96	-	Pro B:97
5	Asn B:142	-	Pro B:143
6	Asn B:145	-	Pro B:146
7	Trp C:96	-	Pro C:97
8	Asn C:142	-	Pro C:143
9	Asn C:145	-	Pro C:146
10	Trp D:96	-	Pro D:97
11	Asn D:142	-	Pro D:143
12	Asn D:145	-	Pro D:146

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:322
 aligned with Q63U92_BURPS | Q63U92 from UniProtKB/TrEMBL  Length:336

    Alignment length:322
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332  
         Q63U92_BURPS    13 AAAQAVCLAFNENPEAVEPRVQAAIAAAAARINRYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEFSSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDPNDLAQVSRDDCVVLANPSNPTGQALSAGELDQLRQRAGKLLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGLGYRVASSEANFVLVENAAGERTLRFLRERGIQVKDAGQFGLHHHIRISIGREEDNDRLLAALAEYSD 334
               SCOP domains d3p1ta_ A: automated matches                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee..........hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.hhh.eeeehhhhhhhhhhhhhh...eeeee....hhhhhhhh....eeeee........hhhhhh.....eeeeee..........hhhhhhhhhhhh.eeeee..hhhhh............eeeeee............eeee.hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeee...hhhhhhhhhhh.ee.ee.hhhh...eeeee..hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3p1t A  13 AAAQAVCLAFNENPEAVEPRVQAAIAAAAARINRYPFDAEPRVmRKLAEHFSCPEDNLmLVRGIDECFDRISAEFSSmRFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDPNDLAQVSRDDCVVLANPSNPTGQALSAGELDQLRQRAGKLLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAmKRKQWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGLGYRVASSEANFVLVENAAGERTLRFLRERGIQVKDAGQFGLHHHIRISIGREEDNDRLLAALAEYSD 334
                                    22        32        42        52   |    62        72        82       |92       102       112       122       132       142       152       162       172       182       192       202       212      |222       232       242       252       262       272       282       292       302       312       322       332  
                                                                      56-MSE         71-MSE             90-MSE                                                                                                                          219-MSE

Chain B from PDB  Type:PROTEIN  Length:319
 aligned with Q63U92_BURPS | Q63U92 from UniProtKB/TrEMBL  Length:336

    Alignment length:319
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326         
         Q63U92_BURPS    17 AVCLAFNENPEAVEPRVQAAIAAAAARINRYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEFSSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDPNDLAQVSRDDCVVLANPSNPTGQALSAGELDQLRQRAGKLLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGLGYRVASSEANFVLVENAAGERTLRFLRERGIQVKDAGQFGLHHHIRISIGREEDNDRLLAALAEYSDH 335
               SCOP domains d3p1tb_ B: automated matches                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.........hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh..hhh.eeeehhhhhhhhhhhhhh...eeeee....hhhhhhhhhhh.eeeee........hhhhhh.....eeeeee..........hhhhhhhhhhhh.eeeee..hhhhh............eeeeee............eeee.hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeee...hhhhhhhhhhh.eeeee.hhhh...eeeee..hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3p1t B  17 AVCLAFNENPEAVEPRVQAAIAAAAARINRYPFDAEPRVmRKLAEHFSCPEDNLmLVRGIDECFDRISAEFSSmRFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDPNDLAQVSRDDCVVLANPSNPTGQALSAGELDQLRQRAGKLLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAmKRKQWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGLGYRVASSEANFVLVENAAGERTLRFLRERGIQVKDAGQFGLHHHIRISIGREEDNDRLLAALAEYSDH 335
                                    26        36        46        56        66    |   76        86   |    96       106       116       126       136       146       156       166       176       186       196       206       216  |    226       236       246       256       266       276       286       296       306       316       326         
                                                                  56-MSE         71-MSE             90-MSE                                                                                                                          219-MSE

Chain C from PDB  Type:PROTEIN  Length:321
 aligned with Q63U92_BURPS | Q63U92 from UniProtKB/TrEMBL  Length:336

    Alignment length:321
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333 
         Q63U92_BURPS    14 AAQAVCLAFNENPEAVEPRVQAAIAAAAARINRYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEFSSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDPNDLAQVSRDDCVVLANPSNPTGQALSAGELDQLRQRAGKLLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGLGYRVASSEANFVLVENAAGERTLRFLRERGIQVKDAGQFGLHHHIRISIGREEDNDRLLAALAEYSD 334
               SCOP domains d3p1tc_ C: automated matches                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee..........hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.hhh.eeeehhhhhhhhhhhhhh...eeeee....hhhhhhhh....eeeee........hhhhhh.....eeeeee..........hhhhhhhhhhhh.eeeee..hhhhh............eeeeee......hhhhh.eeee.hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeee...hhhhhhhhhhh.ee.ee.hhhh...eeeee..hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3p1t C  14 AAQAVCLAFNENPEAVEPRVQAAIAAAAARINRYPFDAEPRVmRKLAEHFSCPEDNLmLVRGIDECFDRISAEFSSmRFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDPNDLAQVSRDDCVVLANPSNPTGQALSAGELDQLRQRAGKLLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAmKRKQWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGLGYRVASSEANFVLVENAAGERTLRFLRERGIQVKDAGQFGLHHHIRISIGREEDNDRLLAALAEYSD 334
                                    23        33        43        53  |     63       |73        83      | 93       103       113       123       133       143       153       163       173       183       193       203       213     | 223       233       243       253       263       273       283       293       303       313       323       333 
                                                                     56-MSE         71-MSE             90-MSE                                                                                                                          219-MSE

Chain D from PDB  Type:PROTEIN  Length:317
 aligned with Q63U92_BURPS | Q63U92 from UniProtKB/TrEMBL  Length:336

    Alignment length:317
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       
         Q63U92_BURPS    17 AVCLAFNENPEAVEPRVQAAIAAAAARINRYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEFSSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDPNDLAQVSRDDCVVLANPSNPTGQALSAGELDQLRQRAGKLLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGLGYRVASSEANFVLVENAAGERTLRFLRERGIQVKDAGQFGLHHHIRISIGREEDNDRLLAALAEYS 333
               SCOP domains d3p1td_ D: automated matches                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Aminotran_1_2-3p1tD01 D:17-329                                                                                                                                                                                                                                                                                           ---- Pfam domains (1)
           Pfam domains (2) Aminotran_1_2-3p1tD02 D:17-329                                                                                                                                                                                                                                                                                           ---- Pfam domains (2)
           Pfam domains (3) Aminotran_1_2-3p1tD03 D:17-329                                                                                                                                                                                                                                                                                           ---- Pfam domains (3)
           Pfam domains (4) Aminotran_1_2-3p1tD04 D:17-329                                                                                                                                                                                                                                                                                           ---- Pfam domains (4)
         Sec.struct. author .eee.........hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.hhh.eeeehhhhhhhhhhhhhh...eeeee....hhhhhhhhhhh.eeeee........hhhhhh.....eeeeee..........hhhhhhhhhhhh.eeeee..hhhhh............eeeeee......hhhhh.eeee.hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeee...hhhhhhhhhhh.eeeee.hhhh...eeeee..hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3p1t D  17 AVCLAFNENPEAVEPRVQAAIAAAAARINRYPFDAEPRVmRKLAEHFSCPEDNLmLVRGIDECFDRISAEFSSmRFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDPNDLAQVSRDDCVVLANPSNPTGQALSAGELDQLRQRAGKLLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAmKRKQWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGLGYRVASSEANFVLVENAAGERTLRFLRERGIQVKDAGQFGLHHHIRISIGREEDNDRLLAALAEYS 333
                                    26        36        46        56        66    |   76        86   |    96       106       116       126       136       146       156       166       176       186       196       206       216  |    226       236       246       256       266       276       286       296       306       316       326       
                                                                  56-MSE         71-MSE             90-MSE                                                                                                                          219-MSE

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

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SCOP Domains (1, 4)

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Pfam Domains (1, 4)

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